BAC Information

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BAC

Clone NameB6Ng01-271J05
Chromosome1 (Build37)
Map Location 28,717,569 - 28,857,683
singlet/doubletdoublet
Overlap geneGm597, LOC435614
Upstream geneLOC100040952, EG433281, EG665903
Downstream geneEG623924, EG433283, LOC100040665
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271J05.bB6Ng01-271J05.g
ACCGA073618GA073619
length1,090533
definitionB6Ng01-271J05.b B6Ng01-271J05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,856,586 - 28,857,683)(28,717,569 - 28,718,101)
sequence
gaattcagcatagcgacacactattggcttattcaaacatcagcagaaag
attacatgtacgtgcagggtgtcagagttctgtgagttattgactcagtt
cagatagccctgttatgtcttcacattgttctttatcttatggtcaagct
gttcccaggaatgttttaactatggggcatacccaggtttgttttttctt
tttttctcagccccaggcagcctctagctcacaaacaaccaacaatttct
gagtactttatatgacttacaggtcttgaaatttcatctttctttcagct
gtatcagtatgtaaagaaaattgaaccatctttgtaaccgaagttgtttc
agaaaaacctagatccagatgtattcaatcaaatcattaaaattttacac
gacttttacattcagagggaaaagccaactctcatctttgaagtcttaga
acaactttctcagctgagaaggtttgacatggcagtgatgtttatgtcag
gacctgagagaaagcttacaaatgtattattcaatcacttagaaaaatca
gacctgaaggaagattctgttgaagaactcaagaaaagatacggcggctg
acctccatgattggacattgcagcttctgtgtacattattttccttactg
aaatcaagtgtttgactttttacaaaagtgaaaacttacctgagaggagt
ttcctctctctggatggcagtgttctgtggcctaactaatgagagatgct
tcaaataaactaagtttttgtgagttatagatacaaaaaaaaaaaaagaa
gtgatatcatcacaaggaatgacttagtgttacactactgagaggcataa
agaggagtcagaaactcatagcatctcctaggccaccatatagaaccatg
gatatttgttccatggttcaattacaagtggatatgggtgctgcaaactg
aatctgggtcctctgcaagtgaaagaagaacccgtaactgaagagatggt
tctccagcactttgttatggggtttttttctactaagtatctattgattt
tgatatgatgaaattaaactattaagaaatatatgaaact

gaattctcatgggctgataaaagaaagatgggaagttgtagtggctattc
ctggttgtcaactagacaatatttggaatgaactacaatccggaattgga
aggctcaccagtgacccttatctggaggcttggagatccttatctggatc
ttggtttgaagatcttgagccatagtggctatggattccagaagattgaa
tctccgagtttaaggaacacacctttaatctgggctacgcctttcatctg
ggattaaaggtgtggtggaacacacctttaatctgggctacaccttctgc
tggagacaatataaggacattggaagaagggagtctagctcttgctcttg
ctccttcgcctgcttgctgtgtgagactgagtaactgctagatccttgga
cttccattcacagctgcgactgaacaattgttgggaattgagctgccgac
tgtaagtcatcaataaattcctttattatctagagactatccataagttc
tgtgactctagagaaccctgactaatacagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_28856586_28857683
seq2: B6Ng01-271J05.b_44_1133 (reverse)

seq1  AGTTTCATTATATTTCTTAAATTAGGTTTAATTTTCATCATATCAAAATC  50
      ||||||| ||||||||||||  || |||||| ||||||||||||||||||
seq2  AGTTTCA-TATATTTCTTAA--TA-GTTTAA-TTTCATCATATCAAAATC  45

seq1  AATAAGATACTTTAGTAAGAAAAAAACCCATAAACAAAGTGCTGGAGAAC  100
      ||| |||||| ||||| ||||||||||||   ||||||||||||||||||
seq2  AAT-AGATAC-TTAGT-AGAAAAAAACCCCATAACAAAGTGCTGGAGAAC  92

seq1  CATCTCTTCAGTTACGGGTTCTTCTTTCACTTGCAGAGGACCCAGATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTTCAGTTACGGGTTCTTCTTTCACTTGCAGAGGACCCAGATTCA  142

seq1  GTTTGCAGCACCCATATCCACTTGTAATTGAACCATGGAACAAATATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAGCACCCATATCCACTTGTAATTGAACCATGGAACAAATATCCA  192

seq1  TGGTTCTATATGGTGGCCTAGGAGATGCTATGAGTTTCTGACTCCTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTATATGGTGGCCTAGGAGATGCTATGAGTTTCTGACTCCTCTTT  242

seq1  ATGCCTCTCAGTAGTGTAACACTAAGTCATTCCTTGTGATGATATCACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCTCAGTAGTGTAACACTAAGTCATTCCTTGTGATGATATCACTT  292

seq1  CTTTTTTTTTTTTTGTATCTATAACTCACAAAAACTTAGTTTATTTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTTTGTATCTATAACTCACAAAAACTTAGTTTATTTGAAG  342

seq1  CATCTCTCATTAGTTAGGCCACAGAACACTGCCATCCAGAGAGAGGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCATTAGTTAGGCCACAGAACACTGCCATCCAGAGAGAGGAAAC  392

seq1  TCCTCTCAGGTAAGTTTTCACTTTTGTAAAAAGTCAAACACTTGATTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCAGGTAAGTTTTCACTTTTGTAAAAAGTCAAACACTTGATTTCA  442

seq1  GTAAGGAAAATAATGTACACAGAAGCTGCAATGTCCAATCATGGAGGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGAAAATAATGTACACAGAAGCTGCAATGTCCAATCATGGAGGTCA  492

seq1  GCCGCCGTATCTTTTCTTGAGTTCTTCAACAGAATCTTCCTTCAGGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCCGTATCTTTTCTTGAGTTCTTCAACAGAATCTTCCTTCAGGTCTG  542

seq1  ATTTTTCTAAGTGATTGAATAATACATTTGTAAGCTTTCTCTCAGGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTAAGTGATTGAATAATACATTTGTAAGCTTTCTCTCAGGTCCT  592

seq1  GACATAAACATCACTGCCATGTCAAACCTTCTCAGCTGAGAAAGTTGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAAACATCACTGCCATGTCAAACCTTCTCAGCTGAGAAAGTTGTTC  642

seq1  TAAGACTTCAAAGATGAGAGTTGGCTTTTCCCTCTGAATGTAAAAGTCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTTCAAAGATGAGAGTTGGCTTTTCCCTCTGAATGTAAAAGTCGT  692

seq1  GTAAAATTTTAATGATTTGATTGAATACATCTGGATCTAGGTTTTTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTTTAATGATTTGATTGAATACATCTGGATCTAGGTTTTTCTGA  742

seq1  AACAACTTCGGTTACAAAGATGGTTCAATTTTCTTTACATACTGATACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTTCGGTTACAAAGATGGTTCAATTTTCTTTACATACTGATACAG  792

seq1  CTGAAAGAAAGATGAAATTTCAAGACCTGTAAGTCATATAAAGTACTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGAAAGATGAAATTTCAAGACCTGTAAGTCATATAAAGTACTCAG  842

seq1  AAATTGTTGGTTGTTTGTGAGCTAGAGGCTGCCTGGGGCTGAGAAAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTGGTTGTTTGTGAGCTAGAGGCTGCCTGGGGCTGAGAAAAAAA  892

seq1  GAAAAAACAAACCTGGGTATGCCCCATAGTTAAAACATTCCTGGGAACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAACAAACCTGGGTATGCCCCATAGTTAAAACATTCCTGGGAACAG  942

seq1  CTTGACCATAAGATAAAGAACAATGTGAAGACATAACAGGGCTATCTGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACCATAAGATAAAGAACAATGTGAAGACATAACAGGGCTATCTGAA  992

seq1  CTGAGTCAATAACTCACAGAACTCTGACACCCTGCACGTACATGTAATCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCAATAACTCACAGAACTCTGACACCCTGCACGTACATGTAATCT  1042

seq1  TTCTGCTGATGTTTGAATAAGCCAATAGTGTGTCGCTATGCTGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGATGTTTGAATAAGCCAATAGTGTGTCGCTATGCTGAATTC  1090


seq1: chr1_28717569_28718101
seq2: B6Ng01-271J05.g_61_593

seq1  GAATTCTCATGGGCTGATAAAAGAAAGATGGGAAGTTGTAGTGGCTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGGGCTGATAAAAGAAAGATGGGAAGTTGTAGTGGCTATTC  50

seq1  CTGGTTGTCAACTAGACAATATTTGGAATGAACTACAATCCGGAATTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGTCAACTAGACAATATTTGGAATGAACTACAATCCGGAATTGGA  100

seq1  AGGCTCACCAGTGACCCTTATCTGGAGGCTTGGAGATCCTTATCTGGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCACCAGTGACCCTTATCTGGAGGCTTGGAGATCCTTATCTGGATC  150

seq1  TTGGTTTGAAGATCTTGAGCCATAGTGGCTATGGATTCCAGAAGATTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGAAGATCTTGAGCCATAGTGGCTATGGATTCCAGAAGATTGAA  200

seq1  TCTCCGAGTTTAAGGAACACACCTTTAATCTGGGCTACGCCTTTCATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGAGTTTAAGGAACACACCTTTAATCTGGGCTACGCCTTTCATCTG  250

seq1  GGATTAAAGGTGTGGTGGAACACACCTTTAATCTGGGCTACACCTTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAGGTGTGGTGGAACACACCTTTAATCTGGGCTACACCTTCTGC  300

seq1  TGGAGACAATATAAGGACATTGGAAGAAGGGAGTCTAGCTCTTGCTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAATATAAGGACATTGGAAGAAGGGAGTCTAGCTCTTGCTCTTG  350

seq1  CTCCTTCGCCTGCTTGCTGTGTGAGACTGAGTAACTGCTAGATCCTTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCGCCTGCTTGCTGTGTGAGACTGAGTAACTGCTAGATCCTTGGA  400

seq1  CTTCCATTCACAGCTGCGACTGAACAATTGTTGGGAATTGAGCTGCCGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATTCACAGCTGCGACTGAACAATTGTTGGGAATTGAGCTGCCGAC  450

seq1  TGTAAGTCATCAATAAATTCCTTTATTATCTAGAGACTATCCATAAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTCATCAATAAATTCCTTTATTATCTAGAGACTATCCATAAGTTC  500

seq1  TGTGACTCTAGAGAACCCTGACTAATACAGAAG  533
      |||||||||||||||||||||||||||||||||
seq2  TGTGACTCTAGAGAACCCTGACTAATACAGAAG  533


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