BAC Information

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BAC

Clone NameB6Ng01-271K11
Chromosome1 (Build37)
Map Location 111,437,605 - 111,549,085
singlet/doubletdoublet
Overlap genenone
Upstream geneEG626474
Downstream geneEG666508, Cdh7, LOC100041429, EG626652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271K11.bB6Ng01-271K11.g
ACCGA073678GA073679
length1,0421,205
definitionB6Ng01-271K11.b B6Ng01-271K11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,437,605 - 111,438,646)(111,547,891 - 111,549,085)
sequence
gaattctctgttcagatatgtaccctagacctttagttgaataatttggt
tctttggtatttaaactcttcagttctttatacattttggatatcaatca
tacatgtcatgtagagtttgaataaaactgtttcccattctcaagacttt
ctctttttctgaccaatgttgccatttgccttacagaagatttttaagtt
ccacgtggttctatttccccacatgttctcctattaggttcattgttaca
gtctttgattcacttggacttgagttagtacagggacataaatatggaat
tatttgaaatctttctgatcagacaatccatttgacaagctctatttgtt
gaattatttactttcttttttttcagtgtgtatttctgtttctttatcaa
aactaggtgcatatatgcatgtaaagttttgtctcagtattcaattcaat
tctagcatctatttttataccaatagcatttttatggagacagtcttgaa
cctgttcttttttttttttgtagcaaggctacaaaatgataatatttttt
tattaagataatcctaacaatgtgtgaggataggagatttttccatcttt
ttaaatcatatttaatttcgttcttcagagacttgaagttttatggtgtt
tggttaaagttgcctgtcttagtcagggtttctattcctgcacaaacatc
atgaccaagaagcaagttggggaggaaagggtttattcggcttacacttc
catactgctgttcatcaccaagggaagtcaggactggaactcaagcaggt
cagaaagcagagctgatgcagaagccatggagagatgttctttactggct
tgcttcccctggcttgttcagcctgctctcttataaaaccaagattacca
gcccagagatggtcccacccacatggggcccttccctgttgatcactaat
tgagaaaaatgccatacagttggatctcatggaggcatttcctcaactga
gatcctttttctgtgaatacttccagctgtgtccagttgaca

gaattcttttcaggttatttttctttgaggaaatttaggctgtgtctaag
ctttaaatatatacaacactggatcaccagaccagaaatattgggacatt
tatctaaaatggtaagtgcttctccctctgaaataacataaatttcaaaa
gataaagcttgctgagaacattaagggttgtgtttaagtctagtttatct
tacttggccttaaacttatacacagatatggaaccagtattccttccagg
aagttgaaaactgtttaagttctttttgaacacataatgttgtgtttcct
ggcagatgccgttatgtgatgaaggcttcatgtaggtgcaaatgaattat
tgtataacctaacaccaaggttatataagagtaaaacttaagaccatata
taacatttatatggaagaatttaataatagacctaaaagtcaaccttcgt
ttaaactgaagttttaatgttctgcttgttttatggttctgcttgtttta
tggttcaactaccatgaggcatggctattcattaacttcttactggaata
tttaggaatcacaattaaattgtttgtatttttgctgttgtttacatcct
tttgaaaaaaagtcatattacttatatgtctatatgttattgccaagtgg
tatttaacaggtagtgtgttgattattcagtcactgaatttcaccaacaa
atctcaattttaatatttatagtgctaatttgaaatgtttgtatttctta
ttaaaagtgaaggaatttgaaacatatttaggaacaaattctaaagttgt
tctcttgactgctaagtggtctccatacatgatgtcctttcattgaagac
tatatccatgatgggtgggtagcaacataaagaaattcattgtcttgttt
aacctgaaatattttacagtcatttaaagataataaaactagtaaacttt
agatatgggcaatatatcagaacattctagttaaaatagtaatccccaga
gcaaagtcaatatatcaaaatccacagtttgctaaatctatgaatacctg
catgcagttacagaaaaacttctttgcctttatttacctgagatattttt
tctgccaatatttaaggaataatatccatagaatagtttgaataactgta
aaacctgtgtttaacaaatcatataagcttatttaataccccctaatttt
aaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_111437605_111438646
seq2: B6Ng01-271K11.b_44_1085

seq1  GAATTCTCTGTTCAGATATGTACCCTAGACCTTTAGTTGAATAATTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTCAGATATGTACCCTAGACCTTTAGTTGAATAATTTGGT  50

seq1  TCTTTGGTATTTAAACTCTTCAGTTCTTTATACATTTTGGATATCAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGTATTTAAACTCTTCAGTTCTTTATACATTTTGGATATCAATCA  100

seq1  TACATGTCATGTAGAGTTTGAATAAAACTGTTTCCCATTCTCAAGACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTCATGTAGAGTTTGAATAAAACTGTTTCCCATTCTCAAGACTTT  150

seq1  CTCTTTTTCTGACCAATGTTGCCATTTGCCTTACAGAAGATTTTTAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTCTGACCAATGTTGCCATTTGCCTTACAGAAGATTTTTAAGTT  200

seq1  CCACGTGGTTCTATTTCCCCACATGTTCTCCTATTAGGTTCATTGTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTGGTTCTATTTCCCCACATGTTCTCCTATTAGGTTCATTGTTACA  250

seq1  GTCTTTGATTCACTTGGACTTGAGTTAGTACAGGGACATAAATATGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGATTCACTTGGACTTGAGTTAGTACAGGGACATAAATATGGAAT  300

seq1  TATTTGAAATCTTTCTGATCAGACAATCCATTTGACAAGCTCTATTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAAATCTTTCTGATCAGACAATCCATTTGACAAGCTCTATTTGTT  350

seq1  GAATTATTTACTTTCTTTTTTTTCAGTGTGTATTTCTGTTTCTTTATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATTTACTTTCTTTTTTTTCAGTGTGTATTTCTGTTTCTTTATCAA  400

seq1  AACTAGGTGCATATATGCATGTAAAGTTTTGTCTCAGTATTCAATTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGTGCATATATGCATGTAAAGTTTTGTCTCAGTATTCAATTCAAT  450

seq1  TCTAGCATCTATTTTTATACCAATAGCATTTTTATGGAGACAGTCTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCATCTATTTTTATACCAATAGCATTTTTATGGAGACAGTCTTGAA  500

seq1  CCTGTTCTTTTTTTTTTTTGTAGCAAGGCTACAAAATGATAATATTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCTTTTTTTTTTTTGTAGCAAGGCTACAAAATGATAATATTTTTT  550

seq1  TATTAAGATAATCCTAACAATGTGTGAGGATAGGAGATTTTTCCATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGATAATCCTAACAATGTGTGAGGATAGGAGATTTTTCCATCTTT  600

seq1  TTAAATCATATTTAATTTCGTTCTTCAGAGACTTGAAGTTTTATGGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCATATTTAATTTCGTTCTTCAGAGACTTGAAGTTTTATGGTGTT  650

seq1  TGGTTAAAGTTGCCTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAAGTTGCCTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATC  700

seq1  ATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCGGCTTACACTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCGGCTTACACTTC  750

seq1  CATACTGCTGTTCATCACCAAGGGAAGTCAGGACTGGAACTCAAGCAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGCTGTTCATCACCAAGGGAAGTCAGGACTGGAACTCAAGCAGGT  800

seq1  CAGAAAGCAGGAGCTGATGCAGAAGCCATGGAGAGATGTTCTTTACTGGC  850
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCA-GAGCTGATGCAGAAGCCATGGAGAGATGTTCTTTACTGGC  849

seq1  TTGCTTCCCCTGGCTTGTTCAGCCTGCTCTCTTATAAAACCAAGATTACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCCCTGGCTTGTTCAGCCTGCTCTCTTATAAAACCAAGATTACC  899

seq1  AGCCCAGAGATGGTCCCACCCACATGGGGCCCTTCCCTGTTGATCACTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGAGATGGTCCCACCCACATGGGGCCCTTCCCTGTTGATCACTAA  949

seq1  TTGAG-AAAATGCCATACAGTTGGATCTCATGGAGGCATTTCCTCAACTG  999
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAAAATGCCATACAGTTGGATCTCATGGAGGCATTTCCTCAACTG  999

seq1  AAGATCCTTTTTCTGTG-ATAACTCCAGCTGTGTCAAGTTGACA  1042
       |||||||||||||||| |||  |||||||||||| ||||||||
seq2  -AGATCCTTTTTCTGTGAATACTTCCAGCTGTGTCCAGTTGACA  1042


seq1: chr1_111547891_111549085
seq2: B6Ng01-271K11.g_65_1269 (reverse)

seq1  TGTTT--AATTA-GTGGTATTAAATAAGC-TATATAATATGTTAAACAAC  46
      |||||  ||||| | |||||||||||||| ||||| || |||||||| ||
seq2  TGTTTAAAATTAGGGGGTATTAAATAAGCTTATATGATTTGTTAAAC-AC  49

seq1  AG--TTTATAGTAATACAAACTA-TCTAT-GATATTAATTTCCT--AATA  90
      ||  |||| ||| || ||||||| ||||| |||||||  |||||  ||||
seq2  AGGTTTTACAGTTATTCAAACTATTCTATGGATATTA--TTCCTTAAATA  97

seq1  TTGGCAGAAAAATATA-CTCAGGTAAATAAGGGC-AAGAAG-TTTTCTGT  137
      |||||||||||| ||| ||||||||||||| ||| |||||| ||||||||
seq2  TTGGCAGAAAAA-ATATCTCAGGTAAATAAAGGCAAAGAAGTTTTTCTGT  146

seq1  ACTTGCATGCAGTTA-TCATAGATTTAGCAAACTGT-GATTTTGATAATA  185
      |  ||||||||| || |||||||||||||||||||| ||||||||| |||
seq2  AACTGCATGCAGGTATTCATAGATTTAGCAAACTGTGGATTTTGAT-ATA  195

seq1  TTGACTTTGCTCTGGGGATTACTATTTTAACTAGAATG-TCTGATATATT  234
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTGACTTTGCTCTGGGGATTACTATTTTAACTAGAATGTTCTGATATATT  245

seq1  GCCCATATCTAAAGTTTTACTAGTTTTATTATCTTTAAATGACTGTAAAA  284
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCCCATATCTAAAG-TTTACTAGTTTTATTATCTTTAAATGACTGTAAAA  294

seq1  TATTTCAGGTTAAACAAGACAATGAATTTCTTTATGTTGCTACCCACCCA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAGGTTAAACAAGACAATGAATTTCTTTATGTTGCTACCCACCCA  344

seq1  TCATGGATATAGTCTTCAATGAAAGGACATCATGTATGGAGACCACTTAG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGATATAGTCTTCAATGAAAGGACATCATGTATGGAGACCACTTAG  394

seq1  CAGTCAAGAGAACAACTTTAGAATTTGTTCCTAAATATGTTTCAAATTCC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAGAGAACAACTTTAGAATTTGTTCCTAAATATGTTTCAAATTCC  444

seq1  TTCACTTTTAATAAGAAATACAAACATTTCAAATTAGCACTATAAATATT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTTAATAAGAAATACAAACATTTCAAATTAGCACTATAAATATT  494

seq1  AAAATTGAGATTTGTTGGTGAAATTCAGTGACTGAATAATCAACACACTA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGAGATTTGTTGGTGAAATTCAGTGACTGAATAATCAACACACTA  544

seq1  CCTGTTAAATACCACTTGGCAATAACATATAGACATATAAGTAATATGAC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTAAATACCACTTGGCAATAACATATAGACATATAAGTAATATGAC  594

seq1  TTTTTTTCAAAAGGATGTAAACAACAGCAAAAATACAAACAATTTAATTG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCAAAAGGATGTAAACAACAGCAAAAATACAAACAATTTAATTG  644

seq1  TGATTCCTAAATATTCCAGTAAGAAGTTAATGAATAGCCATGCCTCATGG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCTAAATATTCCAGTAAGAAGTTAATGAATAGCCATGCCTCATGG  694

seq1  TAGTTGAACCATAAAACAAGCAGAACCATAAAACAAGCAGAACATTAAAA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGAACCATAAAACAAGCAGAACCATAAAACAAGCAGAACATTAAAA  744

seq1  CTTCAGTTTAAACGAAGGTTGACTTTTAGGTCTATTATTAAATTCTTCCA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTTAAACGAAGGTTGACTTTTAGGTCTATTATTAAATTCTTCCA  794

seq1  TATAAATGTTATATATGGTCTTAAGTTTTACTCTTATATAACCTTGGTGT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATGTTATATATGGTCTTAAGTTTTACTCTTATATAACCTTGGTGT  844

seq1  TAGGTTATACAATAATTCATTTGCACCTACATGAAGCCTTCATCACATAA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTATACAATAATTCATTTGCACCTACATGAAGCCTTCATCACATAA  894

seq1  CGGCATCTGCCAGGAAACACAACATTATGTGTTCAAAAAGAACTTAAACA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCATCTGCCAGGAAACACAACATTATGTGTTCAAAAAGAACTTAAACA  944

seq1  GTTTTCAACTTCCTGGAAGGAATACTGGTTCCATATCTGTGTATAAGTTT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAACTTCCTGGAAGGAATACTGGTTCCATATCTGTGTATAAGTTT  994

seq1  AAGGCCAAGTAAGATAAACTAGACTTAAACACAACCCTTAATGTTCTCAG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAAGTAAGATAAACTAGACTTAAACACAACCCTTAATGTTCTCAG  1044

seq1  CAAGCTTTATCTTTTGAAATTTATGTTATTTCAGAGGGAGAAGCACTTAC  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTTATCTTTTGAAATTTATGTTATTTCAGAGGGAGAAGCACTTAC  1094

seq1  CATTTTAGATAAATGTCCCAATATTTCTGGTCTGGTGATCCAGTGTTGTA  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAGATAAATGTCCCAATATTTCTGGTCTGGTGATCCAGTGTTGTA  1144

seq1  TATATTTAAAGCTTAGACACAGCCTAAATTTCCTCAAAGAAAAATAACCT  1184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTAAAGCTTAGACACAGCCTAAATTTCCTCAAAGAAAAATAACCT  1194

seq1  GAAAAGAATTC  1195
      |||||||||||
seq2  GAAAAGAATTC  1205


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