BAC Information

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BAC

Clone NameB6Ng01-271N17
Chromosome4 (Build37)1 (Build37)
Map Location 59,243,580 - 59,243,95436,593,030 - 36,594,134
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMusk, Edg2, LOC675306, LOC433711, Olfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg
Downstream geneLOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, E130308A19Rik, LOC100041592, 1110054O05Rik, Snx30, Slc46a2, LOC100041656, Mup4, LOC620807, LOC100041658, LOC620846, Mup2, LOC620882, LOC100041687
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271N17.bB6Ng01-271N17.g
ACCGA073828GA073829
length3691,089
definitionB6Ng01-271N17.b B6Ng01-271N17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(59,243,580 - 59,243,954)(36,593,030 - 36,594,134)
sequence
accagggctgggcaggtacaggcctgctggcctgaatcagcaggactgtg
cagggcagaatgcctacccctccattctgcagcttccggtcagttgtcaa
agacagagcagccatacttttctccctatgtttttttttttttctttttt
tggggtgggggaggtttgagacagggtttctctgtgtagccctggctgtc
ctggaactcactttgtagatcaggctggcctcgaactcagaaatccgcct
gcctctgcctcccaagtgctgagattaaaggcgtgagccaccctgcccgg
ctctccctatgtttctatccttttaagatgatctatgaaagcaaggggtg
gcgggttgggggtggagat
gaattctcatgggctacgtgatgaaactaggcttcataccatttcccaac
tggctagtcttaaggctgcccttccctcccagatttgtccctcagccggc
tgacagccagcatggcctcctgcccagcctgtcatcagccctcatatggc
tgaaggagccttccaggtccacatcagatactctctgggcatgaagcatg
cccttcaacagggcaaggggacggagacctgctccaggtcttgctccgtc
tgtcaatagccatgacggccagccacgaagcaaactgtttttagccaaca
aaaatcaaatacctaattcttgagaagccaggaatgcttttcactccgct
gtgccctgaactccagcgtgacctttgagaggaaatcagatacccagtaa
acaagattcttgcacaggcagcatcaacagagatgaccatgtaagctcga
ggggaggggtggctaaaaggactgaagaccatggagggtcagcagtgtgc
tttttaaagcggcctgggtatgctggccctgcaaaaacacccttggtgat
gaggaaaaacacttactcctaaggaagaaggcagataaagtcagagtaag
ccgggcagtggtggcgcacgcctttcatcccagcactcgggaggcagaag
caggtggatttctgagttcgaggccagcctggtctagagtgagttccagg
acagctggggctacacagagaaaccctgtctcaaaaaaaaaaaaaaaaaa
aaaaaaaaagaaagaaagaaagaaagaaagaaaagaagagaaaagaaaaa
aagaaagagtagctctgctctccactgttctacacttgatgcagctgggc
atggttgcactcgactgttattccagtactcggttgggtagaggtggcgc
acacctttaatcggagcaactctggaggcagaggcagaagcataactgga
atttgaggccagctggtctgcatggccaactccaaaaaataaattaaata
aaataaatagactctaaacagatagcttgtgacaaacaacattgcagtca
aagaagatctgggatccaagttctctgatcagcaaggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_59243580_59243954
seq2: B6Ng01-271N17.b_47_421 (reverse)

seq1  ATCTCCACCCCCAACCCGCCACCCCTTGCTTTCATAGATCATCTTAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCACCCCCAACCCGCCACCCCTTGCTTTCATAGATCATCTTAAAAG  50

seq1  GATAGAAACATAGGGAGAGCCGGGCAGGGTGGCTCACGCCTTTAATCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAACATAGGGAGAGCCGGGCAGGGTGGCTCACGCCTTTAATCTCA  100

seq1  GCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGA  150

seq1  TCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTC  200

seq1  TCAAACCTCCCCCACCCCAAAAAAAGAAAAAAAAAAAAACATAGGGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCTCCCCCACCCCAAAAAAAGAAAAAAAAAAAAACATAGGGAGAA  250

seq1  AAGTATGGCTGCTCTGTCTTTGACAACTGACCGGAAGCTGCAGAATGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGGCTGCTCTGTCTTTGACAACTGACCGGAAGCTGCAGAATGGAG  300

seq1  GGGTAGGCATTCTGCCCTGCACAGTCCTGCTGATTCAGGCCAGCAGGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGCATTCTGCCCTGCACAGTCCTGCTGATTCAGGCCAGCAGGCCT  350

seq1  GTACCTGCCCAGCCCTGGTGAATTC  375
      |||||||||||||||||||||||||
seq2  GTACCTGCCCAGCCCTGGTGAATTC  375

seq1: chr1_36593030_36594134
seq2: B6Ng01-271N17.g_67_1155

seq1  GAATTCTCATGGGCTACGTGATGAAACTAGGCTTCATACCATTTCCCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGGGCTACGTGATGAAACTAGGCTTCATACCATTTCCCAAC  50

seq1  TGGCTAGTCTTAAGGCTGCCCTTCCCTCCCAGATTTGTCCCTCAGCCGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGTCTTAAGGCTGCCCTTCCCTCCCAGATTTGTCCCTCAGCCGGC  100

seq1  TGACAGCCAGCATGGCCTCCTGCCCAGCCTGTCATCAGCCCTCATATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCCAGCATGGCCTCCTGCCCAGCCTGTCATCAGCCCTCATATGGC  150

seq1  TGAAGGAGCCTTCCAGGTCCACATCAGATACTCTCTGGGCATGAAGCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAGCCTTCCAGGTCCACATCAGATACTCTCTGGGCATGAAGCATG  200

seq1  CCCTTCAACAGGGCAAGGGGACGGAGACCTGCTCCAGGTCTTGCTCCGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCAACAGGGCAAGGGGACGGAGACCTGCTCCAGGTCTTGCTCCGTC  250

seq1  TGTCAATAGCCATGACGGCCAGCCACGAAGCAAACTGTTTTTAGCCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATAGCCATGACGGCCAGCCACGAAGCAAACTGTTTTTAGCCAACA  300

seq1  AAAATCAAATACCTAATTCTTGAGAAGCCAGGAATGCTTTTCACTCCGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAATACCTAATTCTTGAGAAGCCAGGAATGCTTTTCACTCCGCT  350

seq1  GTGCCCTGAACTCCAGCGTGACCTTTGAGAGGAAATCAGATACCCAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTGAACTCCAGCGTGACCTTTGAGAGGAAATCAGATACCCAGTAA  400

seq1  ACAAGATTCTTGCACAGGCAGCATCAACAGAGATGACCATGTAAGCTCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATTCTTGCACAGGCAGCATCAACAGAGATGACCATGTAAGCTCGA  450

seq1  GGGGAGGGGTGGCTAAAAGGACTGAAGACCATGGAGGGTCAGCAGTGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGGTGGCTAAAAGGACTGAAGACCATGGAGGGTCAGCAGTGTGC  500

seq1  TTTTTAAAGCGGCCTGGGTATGCTGGCCCTGCAAAAACACCCTTGGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGCGGCCTGGGTATGCTGGCCCTGCAAAAACACCCTTGGTGAT  550

seq1  GAGGAAAAACACTTACTCCTAAGGAAGAAGGCAGATAAAGTCAGAGTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAACACTTACTCCTAAGGAAGAAGGCAGATAAAGTCAGAGTAAG  600

seq1  CCGGGCAGTGGTGGCGCACGCCTTTCATCCCAGCACTCGGGAGGCAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGCAGTGGTGGCGCACGCCTTTCATCCCAGCACTCGGGAGGCAGAAG  650

seq1  CAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAGAGTGAGTTCCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAGAGTGAGTTCCAGG  700

seq1  ACAGCTGGGGCTACACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAA  750
      ||||||||||||||||||||||||||||||||   |||||||||||||||
seq2  ACAGCTGGGGCTACACAGAGAAACCCTGTCTC---AAAAAAAAAAAAAAA  747

seq1  AAAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAAGAGAAAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAAGAGAAAAGAA  797

seq1  AAAAAGAAAGAGTAGCTCTGCTCTCCACTGTTCTACACTTGATGCAGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAGAGTAGCTCTGCTCTCCACTGTTCTACACTTGATGCAGCTG  847

seq1  GGCATGGTTGCACTCGACTGTTATTCCAGTACTCGGTTGGGTAGAGGTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGTTGCACTCGACTGTTATTCCAGTACTCGGTTGGGTAGAGGTGG  897

seq1  CGCACACCTTTAATCGGAGC-ACTCTGGAGGCAGAGGCAGAAGCATTACT  949
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  CGCACACCTTTAATCGGAGCAACTCTGGAGGCAGAGGCAGAAGCATAACT  947

seq1  GGGAATTTGAGGCCAGCCTGGTCTGCATGGCCAACTCCAAAAAATAAAAT  999
       ||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  -GGAATTTGAGGCCAG-CTGGTCTGCATGGCCAACTCCAAAAAAT-AAAT  994

seq1  AAAATAAAAATAAAATAGGACTTCTACACAGATAGCTTGTGACAAACAAA  1049
       ||||||||   ||||| ||| |||| |||||||||||||||||||| ||
seq2  TAAATAAAA--TAAATA-GAC-TCTAAACAGATAGCTTGTGACAAAC-AA  1039

seq1  CATTTTGCAGTCAAAAGAGGATCTGGGGTTCAAAGTTCTTCTGAGTCAGC  1099
      ||  |||||||| ||||| ||||| ||| || |||||| ||||| |||||
seq2  CA--TTGCAGTC-AAAGAAGATCT-GGGATCCAAGTTC-TCTGA-TCAGC  1083

seq1  CAGGTG  1105
       |||||
seq2  AAGGTG  1089