BAC Information

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BAC

Clone NameB6Ng01-272C10
Chromosome1 (Build37)
Map Location 50,643,276 - 50,787,998
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272C10.bB6Ng01-272C10.g
ACCGA074049GA074050
length1,134833
definitionB6Ng01-272C10.b B6Ng01-272C10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,786,858 - 50,787,998)(50,643,276 - 50,644,108)
sequence
gaattctgtattcttatttgagtgttttctttaacaatttgttctgaact
ttttttccttttgctccaggagacatgcagttttcaaatttcctcttcct
gaacctataaaatttctacctttgactcttggcttttgtgccatagcttc
cagcaagactgtgccctcattttgaactgtatcttttaaccatcacactg
accaatttttcttatacaacttgattgcacgttatgtatctttccttaag
tagatattgaatgccttgtagcctcccacctttgacatgtttgtaggttt
gtttgatttttcttcccagacctttaatattttgggtcccttgatattca
gaatttatttcaaaacatagaaagcattttttgctatttgtttgctttat
tatgtattcactgatctcattatttggttagtgagttttagatagatttc
aagaacaaatttgcaatttctttctatcacattccattcaaaagtaagta
ggacaatttataaacaagtgaaaagtaagacatgaaatcaggtaaatatt
gagtctagctcttggctatatatttgctatgaaaacaaaacaaaacaaaa
caaaaaaacaaaaaaagaaaaaggagaaaatacatcaattaccagaaaac
acttatgaaaaagatttttggaaacattgtttatatgaagcaagtagtat
aaaaatgcctctttgagtaatacatataatatgtgataaatatctttaag
aaaatctttacaatagtcatctaaagctattttttaaaaatttttattag
atttttttaaagaactttattgtgttttgaccatagccatgtttctcatc
caactattcccagacacaacttctcttccatcgtcacaaaatttagtttc
atttttatttatgcaagaaacaaacatatagaacaaaacaaaatcatgaa
tggggctgaagttatggatcagggtaagagcaatggctgctctttcagag
gacctgggttcactttccagcaacacacaattttctgtaactctagtccc
aatctcctctccttctttgctttgtagatcctgatcacgtgtggcatata
aactcataaacacaaaccatgttacatttttaaa

gaattctccattaaacccatctggtcctgggctttttaaattttatttgt
ttatttatttatttatttttggttgtgagataatgactgcttctatttct
ttaggtgttatgggactgtttagattgtttatatgatcatgttttagctt
tggcaccttgtatgtgtctagaaaactgtccatttcatccagattgtcca
atttagttgagtataaacttttgtattggaagacctttttatctttacat
tgacatctaaaatttcatgataatcttttgaggatatttttaattcattc
cttatattgttgaagtacagactagacatttgcatttttaatatagtgtc
ttctgtaaatgacctcagtgattcagttgtgactattatgtgttaaatat
tatcatgtataactgatataaacctttaaataaaagtcaaaataccttct
agaataagatttacatcaaacagtcttcaataaaattttaagccaatatt
tatgaaagtggccctagtctaaaatcccactttagaagctttctttttta
tcagagtttgagaggttctccatcattagtctgttttcttttccttggct
gccctttccataggttcaattttgtcaacgaagtcaggtgatctgttcac
ccattcattagcttacttgaagttttgttgaaattcttcatgatattttc
atgaacatagataggcacagtgccttttagactcagttactaaaataaag
tatgactgaccaggagatggaaggagatggatatataggagtaaggatct
caagggagatggagtggagggaatgagggtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50786858_50787998
seq2: B6Ng01-272C10.b_45_1178 (reverse)

seq1  TTTAAAAATGT-ACATGTGTTTGTGTTTTATGAGTTTATATGCCACACGT  49
      ||||||||||| ||||| ||||||| ||||||||||||||||||||||||
seq2  TTTAAAAATGTAACATG-GTTTGTG-TTTATGAGTTTATATGCCACACGT  48

seq1  GGATTCAGGAATCTACAAAGCAAAAGAAGGAGA-GAGATTGGGACTAGAG  98
      |   ||||| ||||||||||| ||||||||||| ||||||||||||||||
seq2  G--ATCAGG-ATCTACAAAGC-AAAGAAGGAGAGGAGATTGGGACTAGAG  94

seq1  TTACAGAAAATTGTGTGTTGCTGGAAAGTGAACCCAGGTCCTCTGAAAGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAAAATTGTGTGTTGCTGGAAAGTGAACCCAGGTCCTCTGAAAGA  144

seq1  GCAGCCATTGCTCTTACCCCTGATCCATAACTTCAGCCCCATTCATGATT  198
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  GCAGCCATTGCTCTTA-CCCTGATCCATAACTTCAGCCCCATTCATGA-T  192

seq1  TTTGTTTTGTTCTATATGTTTGTTTCTTTGCATAAATAAAAATGAAACTA  248
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTGTTTTGTTCTATATGTTTGTTTC-TTGCATAAATAAAAATGAAACTA  241

seq1  AATTTTGTGACGATGGAAGAGAAGTTGTGTCTGGGAATAGTTGGATGAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTGACGATGGAAGAGAAGTTGTGTCTGGGAATAGTTGGATGAGA  291

seq1  AACATGGCTATGGTCAAAACACAATAAAGTTCTTTAAAAAAATCTAATAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGCTATGGTCAAAACACAATAAAGTTCTTTAAAAAAATCTAATAA  341

seq1  AAATTTTTAAAAAATAGCTTTAGATGACTATTGTAAAGATTTTCTTAAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTAAAAAATAGCTTTAGATGACTATTGTAAAGATTTTCTTAAAG  391

seq1  ATATTTATCACATATTATATGTATTACTCAAAGAGGCATTTTTATACTAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATCACATATTATATGTATTACTCAAAGAGGCATTTTTATACTAC  441

seq1  TTGCTTCATATAAACAATGTTTCCAAAAATCTTTTTCATAAGTGTTTTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCATATAAACAATGTTTCCAAAAATCTTTTTCATAAGTGTTTTCT  491

seq1  GGTAATTGATGTATTTTCTCCTTTTTCTTTTTTTGTTTTTTTGTTTTGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTGATGTATTTTCTCCTTTTTCTTTTTTTGTTTTTTTGTTTTGTT  541

seq1  TTGTTTTGTTTTCATAGCAAATATATAGCCAAGAGCTAGACTCAATATTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTCATAGCAAATATATAGCCAAGAGCTAGACTCAATATTT  591

seq1  ACCTGATTTCATGTCTTACTTTTCACTTGTTTATAAATTGTCCTACTTAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATTTCATGTCTTACTTTTCACTTGTTTATAAATTGTCCTACTTAC  641

seq1  TTTTGAATGGAATGTGATAGAAAGAAATTGCAAATTTGTTCTTGAAATCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATGGAATGTGATAGAAAGAAATTGCAAATTTGTTCTTGAAATCT  691

seq1  ATCTAAAACTCACTAACCAAATAATGAGATCAGTGAATACATAATAAAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAACTCACTAACCAAATAATGAGATCAGTGAATACATAATAAAGC  741

seq1  AAACAAATAGCAAAAAATGCTTTCTATGTTTTGAAATAAATTCTGAATAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATAGCAAAAAATGCTTTCTATGTTTTGAAATAAATTCTGAATAT  791

seq1  CAAGGGACCCAAAATATTAAAGGTCTGGGAAGAAAAATCAAACAAACCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGACCCAAAATATTAAAGGTCTGGGAAGAAAAATCAAACAAACCTA  841

seq1  CAAACATGTCAAAGGTGGGAGGCTACAAGGCATTCAATATCTACTTAAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGTCAAAGGTGGGAGGCTACAAGGCATTCAATATCTACTTAAGG  891

seq1  AAAGATACATAACGTGCAATCAAGTTGTATAAGAAAAATTGGTCAGTGTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATACATAACGTGCAATCAAGTTGTATAAGAAAAATTGGTCAGTGTG  941

seq1  ATGGTTAAAAGATACAGTTCAAAATGAGGGCACAGTCTTGCTGGAAGCTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAAAAGATACAGTTCAAAATGAGGGCACAGTCTTGCTGGAAGCTA  991

seq1  TGGCACAAAAGCCAAGAGTCAAAGGTAGAAATTTTATAGGTTCAGGAAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAAAAGCCAAGAGTCAAAGGTAGAAATTTTATAGGTTCAGGAAGA  1041

seq1  GGAAATTTGAAAACTGCATGTCTCCTGGAGCAAAAGGAAAAAAAGTTCAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTGAAAACTGCATGTCTCCTGGAGCAAAAGGAAAAAAAGTTCAG  1091

seq1  AACAAATTGTTAAAGAAAACACTCAAATAAGAATACAGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATTGTTAAAGAAAACACTCAAATAAGAATACAGAATTC  1134


seq1: chr1_50643276_50644108
seq2: B6Ng01-272C10.g_64_896

seq1  GAATTCTCCATTAAACCCATCTGGTCCTGGGCTTTTTAAATTTTATTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATTAAACCCATCTGGTCCTGGGCTTTTTAAATTTTATTTGT  50

seq1  TTATTTATTTATTTATTTTTGGTTGTGAGATAATGACTGCTTCTATTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTATTTATTTTTGGTTGTGAGATAATGACTGCTTCTATTTCT  100

seq1  TTAGGTGTTATGGGACTGTTTAGATTGTTTATATGATCATGTTTTAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGTTATGGGACTGTTTAGATTGTTTATATGATCATGTTTTAGCTT  150

seq1  TGGCACCTTGTATGTGTCTAGAAAACTGTCCATTTCATCCAGATTGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCTTGTATGTGTCTAGAAAACTGTCCATTTCATCCAGATTGTCCA  200

seq1  ATTTAGTTGAGTATAAACTTTTGTATTGGAAGACCTTTTTATCTTTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTGAGTATAAACTTTTGTATTGGAAGACCTTTTTATCTTTACAT  250

seq1  TGACATCTAAAATTTCATGATAATCTTTTGAGGATATTTTTAATTCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCTAAAATTTCATGATAATCTTTTGAGGATATTTTTAATTCATTC  300

seq1  CTTATATTGTTGAAGTACAGACTAGACATTTGCATTTTTAATATAGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATTGTTGAAGTACAGACTAGACATTTGCATTTTTAATATAGTGTC  350

seq1  TTCTGTAAATGACCTCAGTGATTCAGTTGTGACTATTATGTGTTAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAAATGACCTCAGTGATTCAGTTGTGACTATTATGTGTTAAATAT  400

seq1  TATCATGTATAACTGATATAAACCTTTAAATAAAAGTCAAAATACCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGTATAACTGATATAAACCTTTAAATAAAAGTCAAAATACCTTCT  450

seq1  AGAATAAGATTTACATCAAACAGTCTTCAATAAAATTTTAAGCCAATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGATTTACATCAAACAGTCTTCAATAAAATTTTAAGCCAATATT  500

seq1  TATGAAAGTGGCCCTAGTCTAAAATCCCACTTTAGAAGCTTTCTTTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAGTGGCCCTAGTCTAAAATCCCACTTTAGAAGCTTTCTTTTTTA  550

seq1  TCAGAGTTTGAGAGGTTCTCCATCATTAGTCTGTTTTCTTTTCCTTGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTTTGAGAGGTTCTCCATCATTAGTCTGTTTTCTTTTCCTTGGCT  600

seq1  GCCCTTTCCATAGGTTCAATTTTGTCAACGAAGTCAGGTGATCTGTTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTCCATAGGTTCAATTTTGTCAACGAAGTCAGGTGATCTGTTCAC  650

seq1  CCATTCATTAGCTTACTTGAAGTTTTGTTGAAATTCTTCATGATATTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCATTAGCTTACTTGAAGTTTTGTTGAAATTCTTCATGATATTTTC  700

seq1  ATGAACATAGATAGGCACAGTGCCTTTTAGACTCAGTTACTAAAATAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATAGATAGGCACAGTGCCTTTTAGACTCAGTTACTAAAATAAAG  750

seq1  TATGACTGACCAGGAGATGGAAGGAGATGGATATATAGGAGTAAGGATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTGACCAGGAGATGGAAGGAGATGGATATATAGGAGTAAGGATCT  800

seq1  CAAGGGAGATGGAGTGGAGGGAATGAGGGTGAA  833
      |||||||||||||||||||||||||||||||||
seq2  CAAGGGAGATGGAGTGGAGGGAATGAGGGTGAA  833


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