BAC Information

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BAC

Clone NameB6Ng01-272E20
Chromosome1 (Build37)
Map Location 111,437,605 - 111,565,285
singlet/doubletdoublet
Overlap genenone
Upstream geneEG626474
Downstream geneEG666508, Cdh7, LOC100041429, EG626652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272E20.bB6Ng01-272E20.g
ACCGA074163GA074164
length9971,121
definitionB6Ng01-272E20.b B6Ng01-272E20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,437,605 - 111,438,593)(111,564,171 - 111,565,285)
sequence
gaattctctgttcagatatgtaccctagacctttagttgaataatttggt
tctttggtatttaaactcttcagttctttatacattttggatatcaatca
tacatgtcatgtagagtttgaataaaactgtttcccattctcaagacttt
ctctttttctgaccaatgttgccatttgccttacagaagatttttaagtt
ccacgtggttctatttccccacatgttctcctattaggttcattgttaca
gtctttgattcacttggacttgagttagtacagggacataaatatggaat
tatttgaaatctttctgatcagacaatccatttgacaagctctatttgtt
gaattatttactttcttttttttcagtgtgtatttctgtttctttatcaa
aactaggtgcatatatgcatgtaaagttttgtctcagtattcaattcaat
tctagcatctatttttataccaatagcatttttatggagacagtcttgaa
cctgttcttttttttttttgtagcaaggctacaaaatgataatatttttt
tattaagataatcctaacaatgtgtgaggataggagatttttccatcttt
ttaaatcatatttaatttcgttcttcagagacttgaagttttatggtgtt
tggttaaagttgcctgtcttagtcagggtttctattcctgcacaaacatc
atgaccaagaagcaagttggggaggaaagggtttattcggcttacacttc
catactgctgttcatcaccaagggaagtcagggactggaactcaagcagg
tcagaaagcaggagctgatgcagaagccatggagagatgttctttactgg
cttgcttcccctggcttgttcagcctgctctcttataaaaccaagattac
cagcccagagatggtcccacccacatggggcccttccctgttgatcacta
attgagaaatgccatacagttggatctcatggaggcattctcactga
gaattcattagaaaaccaacaggaaagaaagctttcaaaattttcaaaat
gcttccaggtccaaaatggaggtggccgttagctgggagtttcatcagct
ctgtagtgcccagatatttagtcgttattctttgagaaaggaatctgtaa
taagcatgtatttggaaaaaaaaaaaaatctgtgtctgttaaatttccgt
agtcaatcccaaattactcgaaatgagattgaagagaggatctcaggcat
agaagatacggtagaaattaatacatcagtgaaagcaaataaaaaatcta
aaaattttctaagaaaaaaatccaggaaattgtggaccatatgaaaagac
caaacctaggaacactagaaatagaagggtgtgcagattctgagtttaaa
tggtaagaaaacattttcaacaattcttagaagataacttttccatccta
aagaaacatacaaaattggtaactttgactaatgctatattggcaatgct
tccttctgtaaatcttgtaatagtgaggaaaattacagcaaaaatactgt
caactaagaatcattcccaaaagagaagatgttattgaaagctgaaaaaa
acttcaggtattacaaatcaaaagtgtatgttactgggttaacaacatca
aagctaatgaggaacaaatattttaatgaatatatccaccaagaggaaag
aaaatgtggcaaaaataaaaatacttcataggaaaactgaaatgtatatt
aaagctttggtaatgggaaataacatctatacaagtaccagaagaataaa
aatacctgaaatatggatggataaatgctggtgtttatgttatggtataa
gggcaatgcaccatatatttgaatttattataataagaagtttaaatatt
catgaacctagaaataaaaatggtaattgtgtggaattattgaaatgaga
gttctctttgactgtactaatcacttcgtagtatatatgttcatcaaaac
atcaaatttttatttcaataatgtattttttaagtaaaaaaataaaaaga
aggcaaactgggaagaattatcaaatgtaaattaggacgtgaattttcta
atatacaactacaaaaatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_111437605_111438593
seq2: B6Ng01-272E20.b_47_1035

seq1  GAATTCTCTGTTCAGATATGTACCCTAGACCTTTAGTTGAATAATTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTCAGATATGTACCCTAGACCTTTAGTTGAATAATTTGGT  50

seq1  TCTTTGGTATTTAAACTCTTCAGTTCTTTATACATTTTGGATATCAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGTATTTAAACTCTTCAGTTCTTTATACATTTTGGATATCAATCA  100

seq1  TACATGTCATGTAGAGTTTGAATAAAACTGTTTCCCATTCTCAAGACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTCATGTAGAGTTTGAATAAAACTGTTTCCCATTCTCAAGACTTT  150

seq1  CTCTTTTTCTGACCAATGTTGCCATTTGCCTTACAGAAGATTTTTAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTCTGACCAATGTTGCCATTTGCCTTACAGAAGATTTTTAAGTT  200

seq1  CCACGTGGTTCTATTTCCCCACATGTTCTCCTATTAGGTTCATTGTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTGGTTCTATTTCCCCACATGTTCTCCTATTAGGTTCATTGTTACA  250

seq1  GTCTTTGATTCACTTGGACTTGAGTTAGTACAGGGACATAAATATGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGATTCACTTGGACTTGAGTTAGTACAGGGACATAAATATGGAAT  300

seq1  TATTTGAAATCTTTCTGATCAGACAATCCATTTGACAAGCTCTATTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAAATCTTTCTGATCAGACAATCCATTTGACAAGCTCTATTTGTT  350

seq1  GAATTATTTACTTTCTTTTTTTTCAGTGTGTATTTCTGTTTCTTTATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATTTACTTTCTTTTTTTTCAGTGTGTATTTCTGTTTCTTTATCAA  400

seq1  AACTAGGTGCATATATGCATGTAAAGTTTTGTCTCAGTATTCAATTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGTGCATATATGCATGTAAAGTTTTGTCTCAGTATTCAATTCAAT  450

seq1  TCTAGCATCTATTTTTATACCAATAGCATTTTTATGGAGACAGTCTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCATCTATTTTTATACCAATAGCATTTTTATGGAGACAGTCTTGAA  500

seq1  CCTGTTCTTTTTTTTTTTTGTAGCAAGGCTACAAAATGATAATATTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCTTTTTTTTTTTTGTAGCAAGGCTACAAAATGATAATATTTTTT  550

seq1  TATTAAGATAATCCTAACAATGTGTGAGGATAGGAGATTTTTCCATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGATAATCCTAACAATGTGTGAGGATAGGAGATTTTTCCATCTTT  600

seq1  TTAAATCATATTTAATTTCGTTCTTCAGAGACTTGAAGTTTTATGGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCATATTTAATTTCGTTCTTCAGAGACTTGAAGTTTTATGGTGTT  650

seq1  TGGTTAAAGTTGCCTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAAGTTGCCTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATC  700

seq1  ATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCGGCTTACACTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCGGCTTACACTTC  750

seq1  CATACTGCTGTTCATCACCAAGGGAAGTCA-GGACTGGAACTCAAGCAGG  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATACTGCTGTTCATCACCAAGGGAAGTCAGGGACTGGAACTCAAGCAGG  800

seq1  TCAGAAAGCAGGAGCTGATGCAGAAGCCATGGAGAGATGTTCTTTACTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGCAGGAGCTGATGCAGAAGCCATGGAGAGATGTTCTTTACTGG  850

seq1  CTTGCTTCCCCTGGCTTGTTCAGCCTGCTCTCTTATAAAACCAAGATTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCCCCTGGCTTGTTCAGCCTGCTCTCTTATAAAACCAAGATTAC  900

seq1  CAGCCCAGAGATGGTCCCACCCACATGGGGCCCTTCCCTGTTGATCACTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGAGATGGTCCCACCCACATGGGGCCCTTCCCTGTTGATCACTA  950

seq1  ATTGAGAAAATGCCATACAGTTGGATCTCATGGAGGCATT  989
      |||||| |||||||||||||||||||||||||||||||||
seq2  ATTGAG-AAATGCCATACAGTTGGATCTCATGGAGGCATT  989

seq1: chr1_111564171_111565285
seq2: B6Ng01-272E20.g_64_1184 (reverse)

seq1  CAAA-TTTTGTAGTTTTGTATATTA-AGAAATCACGTCTTAATTTTACAT  48
      |||| ||||||||  |||||||||| | || ||||||| ||| |||||||
seq2  CAAATTTTTGTAG--TTGTATATTAGAAAATTCACGTCCTAA-TTTACAT  47

seq1  TT--TGAATATCTCCAGTTTTGCTTCTTTTATTTTTTTTACTT-AAAAAT  95
      ||  | | | |  |||||||  ||||||||  ||||||||||| ||||||
seq2  TTGATAATTCTTCCCAGTTTGCCTTCTTTTTATTTTTTTACTTAAAAAAT  97

seq1  ACATTATTGAAAT-AAAATTTGATGTTTTGATGAACATATATACTACGAA  144
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACATTATTGAAATAAAAATTTGATGTTTTGATGAACATATATACTACGAA  147

seq1  GTGATTAGTACAGTCAAAGAG-ACTCTCATTTCAATAATTCCACACAATT  193
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTGATTAGTACAGTCAAAGAGAACTCTCATTTCAATAATTCCACACAATT  197

seq1  ACCA-TTTTATTTCTA-GTTCATGAATATTTAAACTTCTTATTATAATAA  241
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACCATTTTTATTTCTAGGTTCATGAATATTTAAACTTCTTATTATAATAA  247

seq1  ATTCAAATATATGGTGCATTGCCCTTATACCATAACATAAACACCAGCAT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATATATGGTGCATTGCCCTTATACCATAACATAAACACCAGCAT  297

seq1  TTATCCATCCATATTTCAGGTATTTTTATTCTTCTGGTACTTGTATAGAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCATCCATATTTCAGGTATTTTTATTCTTCTGGTACTTGTATAGAT  347

seq1  GTTATTTCCCATTACCAAAGCTTTAATATACATTTCAGTTTTCCTATGAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTCCCATTACCAAAGCTTTAATATACATTTCAGTTTTCCTATGAA  397

seq1  GTATTTTTATTTTTGCCACATTTTCTTTCCTCTTGGTGGATATATTCATT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTATTTTTGCCACATTTTCTTTCCTCTTGGTGGATATATTCATT  447

seq1  AAAATATTTGTTCCTCATTAGCTTTGATGTTGTTAACCCAGTAACATACA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTGTTCCTCATTAGCTTTGATGTTGTTAACCCAGTAACATACA  497

seq1  CTTTTGATTTGTAATACCTGAAGTTTTTTTCAGCTTTCAATAACATCTTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGATTTGTAATACCTGAAGTTTTTTTCAGCTTTCAATAACATCTTC  547

seq1  TCTTTTGGGAATGATTCTTAGTTGACAGTATTTTTGCTGTAATTTTCCTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGGAATGATTCTTAGTTGACAGTATTTTTGCTGTAATTTTCCTC  597

seq1  ACTATTACAAGATTTACAGAAGGAAGCATTGCCAATATAGCATTAGTCAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTACAAGATTTACAGAAGGAAGCATTGCCAATATAGCATTAGTCAA  647

seq1  AGTTACCAATTTTGTATGTTTCTTTAGGATGGAAAAGTTATCTTCTAAGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCAATTTTGTATGTTTCTTTAGGATGGAAAAGTTATCTTCTAAGA  697

seq1  ATTGTTGAAAATGTTTTCTTACCATTTAAACTCAGAATCTGCACACCCTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGAAAATGTTTTCTTACCATTTAAACTCAGAATCTGCACACCCTT  747

seq1  CTATTTCTAGTGTTCCTAGGTTTGGTCTTTTCATATGGTCCACAATTTCC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTAGTGTTCCTAGGTTTGGTCTTTTCATATGGTCCACAATTTCC  797

seq1  TGGATTTTTTTCTTAGAAAATTTTTAGATTTTTTATTTGCTTTCACTGAT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTTTTCTTAGAAAATTTTTAGATTTTTTATTTGCTTTCACTGAT  847

seq1  GTATTAATTTCTACCGTATCTTCTATGCCTGAGATCCTCTCTTCAATCTC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAATTTCTACCGTATCTTCTATGCCTGAGATCCTCTCTTCAATCTC  897

seq1  ATTTCGAGTAATTTGGGATTGACTACGGAAATTTAACAGACACAGATTTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGAGTAATTTGGGATTGACTACGGAAATTTAACAGACACAGATTTT  947

seq1  TTTTTTTTTCCAAATACATGCTTATTACAGATTCCTTTCTCAAAGAATAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCCAAATACATGCTTATTACAGATTCCTTTCTCAAAGAATAA  997

seq1  CGACTAAATATCTGGGCACTACAGAGCTGATGAAACTCCCAGCTAACGGC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTAAATATCTGGGCACTACAGAGCTGATGAAACTCCCAGCTAACGGC  1047

seq1  CACCTCCATTTTGGACCTGGAAGCATTTTGAAAATTTTGAAAGCTTTCTT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCATTTTGGACCTGGAAGCATTTTGAAAATTTTGAAAGCTTTCTT  1097

seq1  TCCTGTTGGTTTTCTAATGAATTC  1115
      ||||||||||||||||||||||||
seq2  TCCTGTTGGTTTTCTAATGAATTC  1121