BAC Information

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BAC

Clone NameB6Ng01-272J05
Chromosome1 (Build37)
Map Location 141,855,295 - 141,856,348
singlet/doubletsinglet
Overlap geneEG545367
Upstream geneDennd1b, Crb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399
Downstream geneCfh, Kcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272J05.bB6Ng01-272J05.g
ACCGA074368GA074369
length1,1871,048
definitionB6Ng01-272J05.b B6Ng01-272J05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggttacagt
agatgctggcgaggatgtggagaaaaaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggtttactc
agaaaactggacatactactactggaggatcctgcaacacctctcctggg
catatatccagaagatgtcacaaccgttaagaaggacatatgctccacta
tgttcatagcagccttatttataatagccagaagctagaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatttacacaat
gtagtactactcagctattaaaaagaatgaatttatgaaattcctaggca
aatggatggacctggagtgcatcatcctgagtgaggaaacccaatcgcaa
aggaactcacacaatatgtactcactgataagtggatattagcccagaaa
cttaggatacacaagatataagatacaatttgctaaaggcatgaaactca
agaagaacgaagaccaaagtgtgaacactttgtcccttcctcgaaatggg
aacaaaacacccatggaaggagttacacagacaaaatttgcagctgtgac
gaaaggatggaccatctagtgattgccatatccaggaatccattccataa
tcagcttccaaacgctgacaccattgcatacactagcaagattttgttgt
aaggaaccagatatagctgtctcttgtgagactatgccggggcctagcaa
acacagaagtggatgctcacagtcagctattgggatgggtcacacggcca
ccaatggaaggagctagagaaagtacccaaggagctaaagggaactgcaa
ccctatatgtggaacagcatatgaactaacagtatcccgagctctgactc
tagctgcattatgtatcaaaagatgcctagtcagccatcactggaaagag
agtccttgaacttgcaacttaaatggctcaaagtacagagaacggcaagg
tctaaataccgttgaagttgagtttggattgtatgag
gaattctgtaactaagaataataacgaatggtttaagctcaatgacaaat
tagactatgaatgtctcgttggatatgaaaatgaacataaacataccaaa
ggctctataacgtgtacttattatggatggtctgatacgccctcatgtta
tggtgagtattattttctctggaatatttttttaaagaaaataatgaatt
tatgtgctaaaatagaaattcctagactcttccttatgatttcatttaac
caatgaaaaaggactgttttgaaagccattgatgtttatatttgcattta
ttatatcattacattcacttatttagtctgtgtgtatacatgcatacatg
tgtgtgtttatggaggtgtgtatactgcaatacacatgtaggtgtcagag
aagctgtggaagtcagctctctcttttcatcatgtgggtctgagggattg
aactcaagactccaggcttagaggcaagcattctctctgattgagccatc
attctggcctgataatctgtttttaaaataatatatctgacagttgtata
tgccaccagattatgattctagcaattaggaccttggatcaagtgatttt
agatttgggtatattagactacatactctgttctgtttccaaaagcaaat
aaacccaatatttcattaaattagtgattcctttgtgtggcctgggtata
tcatgtatcttattagaggacaattcctttattattcaggctcttaatca
tgtaaactaggtctccattatcaaaattaagacttgaagtatgaaactag
gtcatgaaatcttgagggctggtgagatggctcagtggttaagatcatgg
gctgttcttctagagtttcagagtcaaattcccagcaaccacattgtagt
ggctattcctggttgtcaacttgacaatatttggaatgaactacaattcg
gaattggaaggctcaccagtgacccttatctggaggcttggagatcttat
ctggatctgtttgaagatctgagcatagtggcctatggatcagaagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_141855295_141856348
seq2: B6Ng01-272J05.g_63_1110 (reverse)

seq1  ATCTTCTGGAATCCATA-GCCACTATGGCTCAAGATCTTCAAACCAAGAT  49
      ||||||||  ||||||| |||||||| |||| ||||||||||||  ||||
seq2  ATCTTCTG--ATCCATAGGCCACTAT-GCTC-AGATCTTCAAAC--AGAT  44

seq1  CCAGATAAGGATCTCCAAGCCTCCAGATAAGGGTCACTGGTGAGCCTTCC  99
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATAA-GATCTCCAAGCCTCCAGATAAGGGTCACTGGTGAGCCTTCC  93

seq1  AATTCCGAATTGTAGTTCATTCCAAATATTGTCAAGTTGACAACCAGGAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCGAATTGTAGTTCATTCCAAATATTGTCAAGTTGACAACCAGGAA  143

seq1  TAGCCACTACAATGTGGTTGCTGGGAATTTGACTCTGAAACTCTAGAAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACTACAATGTGGTTGCTGGGAATTTGACTCTGAAACTCTAGAAGA  193

seq1  ACAGCCCATGATCTTAACCACTGAGCCATCTCACCAGCCCTCAAGATTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCATGATCTTAACCACTGAGCCATCTCACCAGCCCTCAAGATTTC  243

seq1  ATGACCTAGTTTCATACTTCAAGTCTTAATTTTGATAATGGAGACCTAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTAGTTTCATACTTCAAGTCTTAATTTTGATAATGGAGACCTAGT  293

seq1  TTACATGATTAAGAGCCTGAATAATAAAGGAATTGTCCTCTAATAAGATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGATTAAGAGCCTGAATAATAAAGGAATTGTCCTCTAATAAGATA  343

seq1  CATGATATACCCAGGCCACACAAAGGAATCACTAATTTAATGAAATATTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATATACCCAGGCCACACAAAGGAATCACTAATTTAATGAAATATTG  393

seq1  GGTTTATTTGCTTTTGGAAACAGAACAGAGTATGTAGTCTAATATACCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATTTGCTTTTGGAAACAGAACAGAGTATGTAGTCTAATATACCCA  443

seq1  AATCTAAAATCACTTGATCCAAGGTCCTAATTGCTAGAATCATAATCTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAAATCACTTGATCCAAGGTCCTAATTGCTAGAATCATAATCTGG  493

seq1  TGGCATATACAACTGTCAGATATATTATTTTAAAAACAGATTATCAGGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATATACAACTGTCAGATATATTATTTTAAAAACAGATTATCAGGCC  543

seq1  AGAATGATGGCTCAATCAGAGAGAATGCTTGCCTCTAAGCCTGGAGTCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGATGGCTCAATCAGAGAGAATGCTTGCCTCTAAGCCTGGAGTCTT  593

seq1  GAGTTCAATCCCTCAGACCCACATGATGAAAAGAGAGAGCTGACTTCCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAATCCCTCAGACCCACATGATGAAAAGAGAGAGCTGACTTCCAC  643

seq1  AGCTTCTCTGACACCTACATGTGTATTGCAGTATACACACCTCCATAAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTCTGACACCTACATGTGTATTGCAGTATACACACCTCCATAAAC  693

seq1  ACACACATGTATGCATGTATACACACAGACTAAATAAGTGAATGTAATGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATGTATGCATGTATACACACAGACTAAATAAGTGAATGTAATGA  743

seq1  TATAATAAATGCAAATATAAACATCAATGGCTTTCAAAACAGTCCTTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAATGCAAATATAAACATCAATGGCTTTCAAAACAGTCCTTTTT  793

seq1  CATTGGTTAAATGAAATCATAAGGAAGAGTCTAGGAATTTCTATTTTAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTTAAATGAAATCATAAGGAAGAGTCTAGGAATTTCTATTTTAGC  843

seq1  ACATAAATTCATTATTTTCTTTAAAAAAATATTCCAGAGAAAATAATACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATTCATTATTTTCTTTAAAAAAATATTCCAGAGAAAATAATACT  893

seq1  CACCATAACATGAGGGCGTATCAGACCATCCATAATAAGTACACGTTATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATAACATGAGGGCGTATCAGACCATCCATAATAAGTACACGTTATA  943

seq1  GAGCCTTTGGTATGTTTATGTTCATTTTCATATCCAACGAGACATTCATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTTGGTATGTTTATGTTCATTTTCATATCCAACGAGACATTCATA  993

seq1  GTCTAATTTGTCATTGAGCTTAAACCATTCGTTATTATTCTTAGTTACAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATTTGTCATTGAGCTTAAACCATTCGTTATTATTCTTAGTTACAG  1043

seq1  AATTC  1054
      |||||
seq2  AATTC  1048