BAC Information

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BAC

Clone NameB6Ng01-272N13
Chromosome1 (Build37)
Map Location 28,448,688 - 28,600,329
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040952, EG433281
Downstream geneEG665903, Gm597, LOC435614, EG623924, EG433283
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272N13.bB6Ng01-272N13.g
ACCGA074569GA074570
length6231,114
definitionB6Ng01-272N13.b B6Ng01-272N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,448,688 - 28,449,310)(28,599,196 - 28,600,329)
sequence
gaattcattatttatgcttttataccaactatgacttactctgctctcca
ttttgttggctcatctctccatattcaaggacctctttctgttcttccat
tttctacagggactcaggattaaagaaaaaaaatctagagattcaaacag
agtccacatataaaagagaacttcaacatttatctttctacatctggatt
acattactcaatccactgaaacccatttgcaaaaaaaaaaaaaaaaaaaa
aaaaacatcccatagtcagccatcaaatgaagacactattgcatatgcca
gcaagattatactgaaaggactctgatatagctgtctcttgtgaggctat
gccttgcctgccaaatacagaagtggatgctcacaatcatctatagaatg
gaacacactgcccccaatggaggagctagaaaaagcacccaaggagctga
aggggtctgcagccctgtaagtggaacaacaatatgaactaaccagtgcc
cccagagctctgtctctagttgtatatgtaacagaaggtggcctagtctt
tatattcaccagtacaggagaatgccagggccaagaagtgggagtgtgtg
ggtaggggagcagggtaggggga
gaattcatacttcaaactgggttctggcattccttatttctatagctata
aagcagagtgtagaaaaaggggaacatgaaaactatttacacaaaattag
gagaattgatgatgaaataataagctgaattacttgaaatatttatcctt
aaactgtataaagaaaatactaaaattattccaattttagtaaagtaaaa
tggtgcatagtttctacccaaacactcaagaatctggggaaaaaggatca
taagtttgacaccattctggtttaaaaattgagatcctacttgaaaaagc
agaataaggaaaggatgaaagaaaggagggaaggaaggacaggaacaaag
aaaaagtatggtggcaaatataaaaagtccgacattagagcataattgga
gaccattttcccagtatatgcaagaccataactttgatccctaatactca
gtatgtaaattgtttcttgcatcaacgacattttatttatttatgtattg
tctttattactgttgtcatttttaacattctcaccacatccctccctcct
attttccctttcccttccacattcctctttatgcccctcctcctccattc
tcttcagaaagtggcagacctccaatggctatcaaccaaacatgacacag
aaaatttttcatattcaattctaatttactgtctttattcatttattttc
tataaacatgcttttaattttaaaaatttagaaagaaaatgaaagtaaaa
caaaatgggatcaataaatcaatatttccatatacagattttaatagtaa
ggaatactgcatgatattggtatagaaacaaacaagttgatcaattcaaa
gacacagaaataaacctacacacctgtgaacacttgatttttgacaaaaa
gccaaaaacatagcatggcaaaagaaagtatcttcaacaaattgtgctgg
tctaactagatgtctgcatgtagaagaactcaatagatcatatctatcac
cctgcacaaaactcagtctgtagatctatgacctcatttcaaacagaata
cactcatataaatagacgaaagtagggaatgctgaccaatgatcagatga
cttctgaatgtaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_28448688_28449310
seq2: B6Ng01-272N13.b_46_668

seq1  GAATTCATTATTTATGCTTTTATACCAACTATGACTTACTCTGCTCTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATTTATGCTTTTATACCAACTATGACTTACTCTGCTCTCCA  50

seq1  TTTTGTTGGCTCATCTCTCCATATTCAAGGACCTCTTTCTGTTCTTCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGGCTCATCTCTCCATATTCAAGGACCTCTTTCTGTTCTTCCAT  100

seq1  TTTCTACAGGGACTCAGGATTAAAGAAAAAAAATCTAGAGATTCAAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACAGGGACTCAGGATTAAAGAAAAAAAATCTAGAGATTCAAACAG  150

seq1  AGTCCACATATAAAAGAGAACTTCAACATTTATCTTTCTACATCTGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACATATAAAAGAGAACTTCAACATTTATCTTTCTACATCTGGATT  200

seq1  ACATTACTCAATCCACTGAAACCCATTTGCAAAAAAAAAAAAAAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACTCAATCCACTGAAACCCATTTGCAAAAAAAAAAAAAAAAAAAA  250

seq1  AAAAACATCCCATAGTCAGCCATCAAATGAAGACACTATTGCATATGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATCCCATAGTCAGCCATCAAATGAAGACACTATTGCATATGCCA  300

seq1  GCAAGATTATACTGAAAGGACTCTGATATAGCTGTCTCTTGTGAGGCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATTATACTGAAAGGACTCTGATATAGCTGTCTCTTGTGAGGCTAT  350

seq1  GCCTTGCCTGCCAAATACAGAAGTGGATGCTCACAATCATCTATAGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGCCTGCCAAATACAGAAGTGGATGCTCACAATCATCTATAGAATG  400

seq1  GAACACACTGCCCCCAATGGAGGAGCTAGAAAAAGCACCCAAGGAGCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACACTGCCCCCAATGGAGGAGCTAGAAAAAGCACCCAAGGAGCTGA  450

seq1  AGGGGTCTGCAGCCCTGTAAGTGGAACAACAATATGAACTAACCAGTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCTGCAGCCCTGTAAGTGGAACAACAATATGAACTAACCAGTGCC  500

seq1  CCCAGAGCTCTGTCTCTAGTTGTATATGTAACAGAAGGTGGCCTAGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGCTCTGTCTCTAGTTGTATATGTAACAGAAGGTGGCCTAGTCTT  550

seq1  TATATTCACCAGTACAGGAGAATGCCAGGGCCAAGAAGTGGGAGTGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCACCAGTACAGGAGAATGCCAGGGCCAAGAAGTGGGAGTGTGTG  600

seq1  GGTAGGGGAGCAGGGTAGGGGGA  623
      |||||||||||||||||||||||
seq2  GGTAGGGGAGCAGGGTAGGGGGA  623

seq1: chr1_28599196_28600329
seq2: B6Ng01-272N13.g_69_1182 (reverse)

seq1  GTTACATTCAGAAAGTTCATTCCTGTATCATTTTGTTCAAGGCATCTCCC  50
      |||||||||||||   ||||  ||| ||||  ||| |||  |||| ||||
seq2  GTTACATTCAGAA--GTCAT--CTG-ATCA--TTGGTCA--GCAT-TCCC  40

seq1  TACTTTCTGTTCTA-TTATATGAAGTGTATCCTGTTTTAAATTGAGGTCA  99
      |||||||   |||| ||||||| ||||||| |||||| ||| ||||||||
seq2  TACTTTC--GTCTATTTATATG-AGTGTATTCTGTTTGAAA-TGAGGTCA  86

seq1  TAGATCTACCAGGAATTGAGTTTTGTGCAGGGTGATAGATATGGATCTAT  149
      |||||||| |||  | |||||||||||||||||||||||||| |||||| 
seq2  TAGATCTA-CAG--ACTGAGTTTTGTGCAGGGTGATAGATAT-GATCTA-  131

seq1  TTGAGTTCTTCTACATGCAGACATCTAGTTAGACCAGCACAATTTGTTGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTCTTCTACATGCAGACATCTAGTTAGACCAGCACAATTTGTTGA  181

seq1  AGATACTTTCTTTTTGCCATGCTATGTTTTTGGCTTTTTTGTCAAAAATC  249
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  AGATACTTTC-TTTTGCCATGCTATGTTTTTGGC-TTTTTGTCAAAAATC  229

seq1  AAGTGTTCACAGGTGTGTAGGTTTATTTCTGTGTCTTTGAATTGATCAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTCACAGGTGTGTAGGTTTATTTCTGTGTCTTTGAATTGATCAAC  279

seq1  TTGTTTGTTTCTATACCAATATCATGCAGTATTCCTTACTATTAAAATCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTCTATACCAATATCATGCAGTATTCCTTACTATTAAAATCT  329

seq1  GTATATGGAAATATTGATTTATTGATCCCATTTTGTTTTACTTTCATTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGGAAATATTGATTTATTGATCCCATTTTGTTTTACTTTCATTTT  379

seq1  CTTTCTAAATTTTTAAAATTAAAAGCATGTTTATAGAAAATAAATGAATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAAATTTTTAAAATTAAAAGCATGTTTATAGAAAATAAATGAATA  429

seq1  AAGACAGTAAATTAGAATTGAATATGAAAAATTTTCTGTGTCATGTTTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGTAAATTAGAATTGAATATGAAAAATTTTCTGTGTCATGTTTGG  479

seq1  TTGATAGCCATTGGAGGTCTGCCACTTTCTGAAGAGAATGGAGGAGGAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGCCATTGGAGGTCTGCCACTTTCTGAAGAGAATGGAGGAGGAGG  529

seq1  GGCATAAAGAGGAATGTGGAAGGGAAAGGGAAAATAGGAGGGAGGGATGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAAAGAGGAATGTGGAAGGGAAAGGGAAAATAGGAGGGAGGGATGT  579

seq1  GGTGAGAATGTTAAAAATGACAACAGTAATAAAGACAATACATAAATAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGAATGTTAAAAATGACAACAGTAATAAAGACAATACATAAATAAA  629

seq1  TAAAATGTCGTTGATGCAAGAAACAATTTACATACTGAGTATTAGGGATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTCGTTGATGCAAGAAACAATTTACATACTGAGTATTAGGGATC  679

seq1  AAAGTTATGGTCTTGCATATACTGGGAAAATGGTCTCCAATTATGCTCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATGGTCTTGCATATACTGGGAAAATGGTCTCCAATTATGCTCTA  729

seq1  ATGTCGGACTTTTTATATTTGCCACCATACTTTTTCTTTGTTCCTGTCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCGGACTTTTTATATTTGCCACCATACTTTTTCTTTGTTCCTGTCCT  779

seq1  TCCTTCCCTCCTTTCTTTCATCCTTTCCTTATTCTGCTTTTTCAAGTAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCTCCTTTCTTTCATCCTTTCCTTATTCTGCTTTTTCAAGTAGG  829

seq1  ATCTCAATTTTTAAACCAGAATGGTGTCAAACTTATGATCCTTTTTCCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAATTTTTAAACCAGAATGGTGTCAAACTTATGATCCTTTTTCCCC  879

seq1  AGATTCTTGAGTGTTTGGGTAGAAACTATGCACCATTTTACTTTACTAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTTGAGTGTTTGGGTAGAAACTATGCACCATTTTACTTTACTAAA  929

seq1  ATTGGAATAATTTTAGTATTTTCTTTATACAGTTTAAGGATAAATATTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAATAATTTTAGTATTTTCTTTATACAGTTTAAGGATAAATATTTC  979

seq1  AAGTAATTCAGCTTATTATTTCATCATCAATTCTCCTAATTTTGTGTAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATTCAGCTTATTATTTCATCATCAATTCTCCTAATTTTGTGTAAA  1029

seq1  TAGTTTTCATGTTCCCCTTTTTCTACACTCTGCTTTATAGCTATAGAAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTCATGTTCCCCTTTTTCTACACTCTGCTTTATAGCTATAGAAAT  1079

seq1  AAGGAATGCCAGAACCCAGTTTGAAGTATGAATTC  1134
      |||||||||||||||||||||||||||||||||||
seq2  AAGGAATGCCAGAACCCAGTTTGAAGTATGAATTC  1114