BAC Information

Click to search

BAC

Clone NameB6Ng01-273B17
Chromosome1 (Build37)
Map Location 19,002,351 - 19,133,185
singlet/doubletdoublet
Overlap geneEG435611, LOC100040189, Tcfap2d
Upstream geneLOC100040126, Crisp4, EG574082, EG654460, Defb17, LOC383499
Downstream geneLOC100040413, Tcfap2b, LOC100040198, LOC226901, Pkhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273B17.bB6Ng01-273B17.g
ACCGA074761GA074762
length1,1861,045
definitionB6Ng01-273B17.b B6Ng01-273B17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,132,009 - 19,133,185)(19,002,351 - 19,003,385)
sequence
gaattcttcattgctagaatgtaagcccccttgtttttagagaactctta
ttttctagactgtcatttaaaagagatcaggaaaactgggcatgaaggtg
catgaaggcatctccacatcacttacttggtggctaggatcatctttttt
cttgcagtctgttctttctgttccatatgttgtctggcgagatgctctcc
cactgccttggctggaaactcggtttcacacgtgtagccaaaatcccgag
ccaagtgcaaagcctcacctattggtggaaaacacaagtcactggcttat
ccacatttgaccttacaagggtaatgctgtgagttttctccaactctcat
atgagggtgtgttcacatgcaacacgttgtttctatctaatttaaacagt
gtttctatttaatttaaacaaagctgcaggagagatggagagatggcatt
tgtgaggaatggcattgaaaaataaggaactggaactttccaagtaaaat
ggagatcaaatccgtgactcaggagttttgctgcttttctttgattgtct
cacttcaccgcagttctagtcatgatcaccaatggaaacgctccttggaa
atatatatatatatatatatgcaaatatataaatcaatgtgtatatatat
ttgttgctgctcagatagatgtctataatctatagacaagccattctgat
gacttttccatgagactgatcaaaatatacagcaatgagctcaaaagact
ttgaaagctgttattgctttataaaatgaaacactttcatgaatttcaca
ctgcagtgttagagacggtttattatatgactataatactatcaacatca
gggccttccagaaggctctgaagtactgtacagctttggaaaattcaaaa
cagagcagaatcataaacaacttctacttgtccataaaatattgagtgca
agtaaaattttaataagtggggataaaatatcttaccaaacaaataatat
ttgctgaagaaaattattcttatagtataatggttcaatggttttaaaaa
ttcttattcaaaggtcttacctgaacaggtaaattttatttaaaaattca
atttctgaaatggagaaatacaggttaagtgtagctgctgcttggaacgc
gcatgagggttactctagaaacacgccatgtgccat

gaattccaagccaataagagaatctgtctcaaaacacaaggtagacagct
tgtcttagttaggtttactattgccatgatgaaatgccattaccaaaacc
tacttggggaagaaagggtttatttcactcacagttccacaaatcattcc
atcaaaaacagtgaaggcaaaagctcaagcaaggtctaacctggaggaag
aggttgacacagaggtcatggggcaggatactacttaatggcttgctctc
catgacttcctcagtcccctttgttatagaacccaggaccaccagtcagt
ctatcagtaccagaacccacaatgggctggtccctccctcatcaatggct
ttaagaaaatgccccacatccttgcctccagccccatcttgcagaagcat
ttctttttcaattgaggctcctttctctctgatgactctagcatgtgtca
agtagacataagaataatcaggaaagaaggcccacttgtgatcattccct
ggcctccaggctccacatacacacatgaacaagtgcacatgcatgcaggg
atgcacacactcccatgtgtgccaagaacaaagagattcatggcaactaa
tctcccacccaatctttcttttgtctacctcctattgtcttctctgaagt
tcttctcttgaaaatgcaaagtggccttggctctaatgctttggtctcag
aggtagctgggttagaaatctttgaattgcctttgttgttgcctttgaaa
tatttttcttccttgtgtttcattttccttatatccaaaggaaaacagac
ttggtaatgattaagtgggagagtgtcagcataggatccaatatggagca
gatgttgataaatgaagattgcccctgttggtactatatcaacaaaactt
actctaattagttcaactgtagtacatgcatgcatatgtttagaatcttt
actatgaaactagcactactcacatgcagagcatttacagtacctaaatt
tagaacagttcaatgtagtattatttgcatattatgtaaacagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_19132009_19133185
seq2: B6Ng01-273B17.b_45_1230 (reverse)

seq1  ATGGCA---TGCGTGTTTCTAGAGTTTAAACCTCAT--GCGTTCCAGGCA  45
      ||||||    ||||||||||||||  ||| ||||||  |||||||| || 
seq2  ATGGCACATGGCGTGTTTCTAGAG--TAACCCTCATGCGCGTTCCAAGC-  47

seq1  AGCAGCTTACAACTAAACTGTA-TTCTC--ATTCAGAAATTTGGATTTTT  92
      |||||| ||||  ||| ||||| |||||   |||||||| ||| ||||||
seq2  AGCAGC-TACACTTAACCTGTATTTCTCCATTTCAGAAA-TTGAATTTTT  95

seq1  AAATAAATTTTACCTG-TCAGGTAAGACTTTTGAATAAGAATTTTTAAAA  141
      ||||||| |||||||| ||||||||||| |||||||||||||||||||||
seq2  AAATAAAATTTACCTGTTCAGGTAAGACCTTTGAATAAGAATTTTTAAAA  145

seq1  -CATTG-ACCATTATACTAT-AGAATAATTTTCTTCAGCAAATATTATTT  188
       ||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  CCATTGAACCATTATACTATAAGAATAATTTTCTTCAGCAAATATTATTT  195

seq1  GTTTGGTAAGATATTTTAT-CCCACTTATTAAAATTTTACTTGCACTCAA  237
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTTTGGTAAGATATTTTATCCCCACTTATTAAAATTTTACTTGCACTCAA  245

seq1  TATTTTATGGACAAGTAGAAGTTGTTTATGATTCTGCTCTGTTTTGAATT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATGGACAAGTAGAAGTTGTTTATGATTCTGCTCTGTTTTGAATT  295

seq1  TTCCAAAGCTGTACAGTACTTCAGAGCCTTCTGGAAGG-CCTGATGTTGA  336
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTCCAAAGCTGTACAGTACTTCAGAGCCTTCTGGAAGGCCCTGATGTTGA  345

seq1  TAGTATTATAGTCATATAATAAACCGTCTCTAACACTGCAGTGTGAAATT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTATAGTCATATAATAAACCGTCTCTAACACTGCAGTGTGAAATT  395

seq1  CATGAAAGTGTTTCATTTTATAAAGCAATAACAGCTTTCAAAGTCTTTTG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGTGTTTCATTTTATAAAGCAATAACAGCTTTCAAAGTCTTTTG  445

seq1  AGCTCATTGCTGTATATTTTGATCAGTCTCATGGAAAAGTCATCAGAATG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATTGCTGTATATTTTGATCAGTCTCATGGAAAAGTCATCAGAATG  495

seq1  GCTTGTCTATAGATTATAGACATCTATCTGAGCAGCAACAAATATATATA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTATAGATTATAGACATCTATCTGAGCAGCAACAAATATATATA  545

seq1  CACATTGATTTATATATTTGCATATATATATATATATATATTTCCAAGGA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGATTTATATATTTGCATATATATATATATATATATTTCCAAGGA  595

seq1  GCGTTTCCATTGGTGATCATGACTAGAACTGCGGTGAAGTGAGACAATCA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTCCATTGGTGATCATGACTAGAACTGCGGTGAAGTGAGACAATCA  645

seq1  AAGAAAAGCAGCAAAACTCCTGAGTCACGGATTTGATCTCCATTTTACTT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGCAGCAAAACTCCTGAGTCACGGATTTGATCTCCATTTTACTT  695

seq1  GGAAAGTTCCAGTTCCTTATTTTTCAATGCCATTCCTCACAAATGCCATC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTTCCAGTTCCTTATTTTTCAATGCCATTCCTCACAAATGCCATC  745

seq1  TCTCCATCTCTCCTGCAGCTTTGTTTAAATTAAATAGAAACACTGTTTAA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATCTCTCCTGCAGCTTTGTTTAAATTAAATAGAAACACTGTTTAA  795

seq1  ATTAGATAGAAACAACGTGTTGCATGTGAACACACCCTCATATGAGAGTT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATAGAAACAACGTGTTGCATGTGAACACACCCTCATATGAGAGTT  845

seq1  GGAGAAAACTCACAGCATTACCCTTGTAAGGTCAAATGTGGATAAGCCAG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAACTCACAGCATTACCCTTGTAAGGTCAAATGTGGATAAGCCAG  895

seq1  TGACTTGTGTTTTCCACCAATAGGTGAGGCTTTGCACTTGGCTCGGGATT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGTGTTTTCCACCAATAGGTGAGGCTTTGCACTTGGCTCGGGATT  945

seq1  TTGGCTACACGTGTGAAACCGAGTTTCCAGCCAAGGCAGTGGGAGAGCAT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTACACGTGTGAAACCGAGTTTCCAGCCAAGGCAGTGGGAGAGCAT  995

seq1  CTCGCCAGACAACATATGGAACAGAAAGAACAGACTGCAAGAAAAAAGAT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCCAGACAACATATGGAACAGAAAGAACAGACTGCAAGAAAAAAGAT  1045

seq1  GATCCTAGCCACCAAGTAAGTGATGTGGAGATGCCTTCATGCACCTTCAT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTAGCCACCAAGTAAGTGATGTGGAGATGCCTTCATGCACCTTCAT  1095

seq1  GCCCAGTTTTCCTGATCTCTTTTAAATGACAGTCTAGAAAATAAGAGTTC  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTTTTCCTGATCTCTTTTAAATGACAGTCTAGAAAATAAGAGTTC  1145

seq1  TCTAAAAACAAGGGGGCTTACATTCTAGCAATGAAGAATTC  1177
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAACAAGGGGGCTTACATTCTAGCAATGAAGAATTC  1186


seq1: chr1_19002351_19003385
seq2: B6Ng01-273B17.g_92_1110

seq1  TCTCAAAACACAAGGTAGACAGCTTGTCTTAGTTAGGTTTACTATTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAACACAAGGTAGACAGCTTGTCTTAGTTAGGTTTACTATTGCCA  50

seq1  TGATGAAATGCCATTACCAAAACCTACTTGGGGAAGAAAGGGTTTATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAATGCCATTACCAAAACCTACTTGGGGAAGAAAGGGTTTATTTC  100

seq1  ACTCACAGTTCCACAAATCATTCCATCAAAAACAGTGAAGGCAAAAGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAGTTCCACAAATCATTCCATCAAAAACAGTGAAGGCAAAAGCTC  150

seq1  AAGCAAGGTCTAACCTGGAGGAAGAGGTTGACACAGAGGTCATGGGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGGTCTAACCTGGAGGAAGAGGTTGACACAGAGGTCATGGGGCAG  200

seq1  GATACTACTTAATGGCTTGCTCTCCATGACTTCCTCAGTCCCCTTTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTACTTAATGGCTTGCTCTCCATGACTTCCTCAGTCCCCTTTGTTA  250

seq1  TAGAACCCAGGACCACCAGTCAGTCTATCAGTACCAGAACCCACAATGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCCAGGACCACCAGTCAGTCTATCAGTACCAGAACCCACAATGGG  300

seq1  CTGGTCCCTCCCTCATCAATGGCTTTAAGAAAATGCCCCACATCCTTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCCTCCCTCATCAATGGCTTTAAGAAAATGCCCCACATCCTTGCC  350

seq1  TCCAGCCCCATCTTGCAGAAGCATTTCTTTTTCAATTGAGGCTCCTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCCCATCTTGCAGAAGCATTTCTTTTTCAATTGAGGCTCCTTTCT  400

seq1  CTCTGATGACTCTAGCATGTGTCAAGTAGACATAAGAATAATCAGGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATGACTCTAGCATGTGTCAAGTAGACATAAGAATAATCAGGAAAG  450

seq1  AAGGCCCACTTGTGATCATTCCCTGGCCTCCAGGCTCCACATACACACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCACTTGTGATCATTCCCTGGCCTCCAGGCTCCACATACACACAT  500

seq1  GAACAAGTGCACATGCATGCAGGGATGCACACACTCCCATGTGTGCCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGTGCACATGCATGCAGGGATGCACACACTCCCATGTGTGCCAAG  550

seq1  AACAAAGAGATTCATGGCAACTAATCTCCCACCCAATCTTTCTTTTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAGATTCATGGCAACTAATCTCCCACCCAATCTTTCTTTTGTCT  600

seq1  ACCTCCTATTGTCTTCTCTGAAGTTCTTCTCTTGAAAATGCAAAGTGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTATTGTCTTCTCTGAAGTTCTTCTCTTGAAAATGCAAAGTGGCC  650

seq1  TTGGCTCTAATGCTTTGGTCTCAGAGGTAGCTGGGTTAGAAATCTTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCTAATGCTTTGGTCTCAGAGGTAGCTGGGTTAGAAATCTTTGAA  700

seq1  TTGCCTTTGTTGTTGCCTTTGAAATATTTTTCTTCCTTGTGTTTCATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTGTTGTTGCCTTTGAAATATTTTTCTTCCTTGTGTTTCATTTT  750

seq1  CCTTATATCCAAAGGAAAACAGACTTGGTAATGATTAAGTGGGAGAGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATATCCAAAGGAAAACAGACTTGGTAATGATTAAGTGGGAGAGTGT  800

seq1  CAGCATAGGATCCAATATGGAGCAGATGTTGATAAATGAAGATTGCCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAGGATCCAATATGGAGCAGATGTTGATAAATGAAGATTGCCCCT  850

seq1  GTTGGTACTATTATCAACAAAACTTACTCTAATTAGGTTTCAAACTGTAA  900
      |||||||||| |||||||||||||||||||||||||  ||| |||||| |
seq2  GTTGGTACTA-TATCAACAAAACTTACTCTAATTAG--TTC-AACTGT-A  895

seq1  GTACATGCATGCATATGTTTAGAATCTTTACTATGAAACTAGCACTACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGCATGCATATGTTTAGAATCTTTACTATGAAACTAGCACTACTC  945

seq1  ACAATGCAGAAGCAATTTAACAGGTTACCTTAAATTTAGAACAGTTTCAA  1000
      || |||||| ||||  || ||||  |||| |||||||||||||| |||||
seq2  AC-ATGCAG-AGCA--TTTACAG--TACC-TAAATTTAGAACAG-TTCAA  987

seq1  TGTAAGTATTATTTTGCAATATATGTAAAACAGTA  1035
      ||| ||||||| ||||||   ||||| ||||||||
seq2  TGT-AGTATTA-TTTGCATATTATGT-AAACAGTA  1019


| Home | SequenceCutter | Blast | Download |