BAC Information

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BAC

Clone NameB6Ng01-273I09
Chromosome1 (Build37)
Map Location 180,569,933 - 180,697,252
singlet/doubletdoublet
Overlap geneD230039L06Rik
Upstream gene1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2
Downstream geneKif26b, Smyd3, LOC666354, LOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273I09.bB6Ng01-273I09.g
ACCGA075075GA075076
length1,0231,043
definitionB6Ng01-273I09.b B6Ng01-273I09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(180,569,933 - 180,570,961)(180,696,212 - 180,697,252)
sequence
gaattccacttagcctccccaaggcaggggacagaaaaattctggaatgg
tagagtccagtcgatactaatgggattatccttcagggagcttgaccaac
caactcaaggtatttccagtgattcttcacctccaagcagtgaagagtct
ggcagagttctgagcccccccccttttttttcctccataacatctgcagg
tggtagaccagggctgcagttatcccagagctgagggatgagattttcca
gctctggtcctgtgtggaggcagcagggaggttcctgcaactcctcaggg
tcataaggccaagtcggaaaagcagcaagatgagctcgggagtctctggc
atatgcattagcgtcccagggtaaaaactgtgtaaacggtacatgactta
attcctctgcctgttgggtgtctgtcatccttgagatttcccggggccag
aagaggtcaacacgagctagtgtgacaacacctagctaagcaagggaaaa
gaatttctcagtgatgagggtcagcctgaaccaaggctgaccagaaaaac
aagaggattcagttttaccccaagaaggagggagaagctttgtaagcgga
aagaaaagaggactgtcttggccatggctctcttgggactatgtaggaac
tgttgtctttcttccctgttagttagcagctttggcttagtgggaaaatc
taagattctcaaagcatcatgcagtgggggaaagggtttgggatttgaca
ggctggggagagacgtggtataaaatgtaatgcacggactctttaaggtg
gagaacagaactgggcagtggtggcacacacctttaaacccagcacttgg
gaggcagaggcaggcggatttctgagttcaaggccagccaggactacaga
gtggtctacagagtgagtcccaggacagccaggactacacagagaaaccc
tgtctcgaaaaaaacaaacaaacaaacaaaacaaacagatggagaacact
tctgaggcaccaggaggttcggg
gaattccaccttatttctctctctctctcttttttttttttttggctgtt
gtttttcttttgtttgtgttattgttgttgagtcagtgttcctcacaagg
tctgtagctagctgagatcagagacacccccaccacacccccaccccagt
ctttggccttgctcactttgtgtcttttcttccatagtatttatcacctt
caacctaccatgcaccctccagtaactttgttgtgtttgaggtgcacatt
ccatagccacctcttcccattccaacccacattacatccacgctccttac
aaaaagtagtctgcttatttcagatgctgtagccttatgtggcacaggga
atacttgaaaaatatttattgaacgaatgcatgaatcctgtgtcttcagc
ttcataattgtgcctatgtgccatctggatgagtatttaaagcaaagccc
agtgacctcttgctgtccacatgagactgagttactcctgtggatgctgg
acaccactaacagtgatgctaaagttccttcctataaaatgacagtgttt
gcaaaggacctgtttatcctgcatactgtaaatcatttccagcttagttg
tgacccttaatccagtgtaagtgctatgtaaatagttgccacttaggagt
agtgacaggcacggctgacagtctgtcaccaccagcatgagaccaagttc
ttctgaagattctgatccagggttgattgaatccatgggtatgaagcctg
tggattcagagacaactatatttggttttcttttgggaaaaagggggact
tagatgagaggtgacacgcagaaagcatacatgcttgggcgtggctatgg
cctcagcctgcacagtacctgcaaggacccaggttcccaacttcagaaac
acaaaaaatggaagatggaaggcagagggaggaagagagggaggaagaaa
accctcttaggtctaggtcctagaattattgaaaagcaatgctgaaatga
ccagcctttatgagccctgatgattatcatccttaaatttcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_180569933_180570961
seq2: B6Ng01-273I09.b_42_1064

seq1  GAATTCCACTTAGCCTCCCCAAGGCAGGGGACAGAAAAATTCTGGAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTAGCCTCCCCAAGGCAGGGGACAGAAAAATTCTGGAATGG  50

seq1  TAGAGTCCAGTCGATACTAATGGGATTATCCTTCAGGGAGCTTGACCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCCAGTCGATACTAATGGGATTATCCTTCAGGGAGCTTGACCAAC  100

seq1  CAACTCAAGGTATTTCCAGTGATTCTTCACCTCCAAGCAGTGAAGAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAAGGTATTTCCAGTGATTCTTCACCTCCAAGCAGTGAAGAGTCT  150

seq1  GGCAGAGTTCTGAGCCCCCCCCCTTTTTTTTCCTCCATAACATCTGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGTTCTGAGCCCCCCCCCTTTTTTTTCCTCCATAACATCTGCAGG  200

seq1  TGGTAGACCAGGGCTGCAGTTATCCCAGAGCTGAGGGATGAGATTTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGACCAGGGCTGCAGTTATCCCAGAGCTGAGGGATGAGATTTTCCA  250

seq1  GCTCTGGTCCTGTGTGGAGGCAGCAGGGAGGTTCCTGCAACTCCTCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGTCCTGTGTGGAGGCAGCAGGGAGGTTCCTGCAACTCCTCAGGG  300

seq1  TCATAAGGCCAAGTCGGAAAAGCAGCAAGATGAGCTCGGGAGTCTCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGGCCAAGTCGGAAAAGCAGCAAGATGAGCTCGGGAGTCTCTGGC  350

seq1  ATATGCATTAGCGTCCCAGGGTAAAAACTGTGTAAACGGTACATGACTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATTAGCGTCCCAGGGTAAAAACTGTGTAAACGGTACATGACTTA  400

seq1  ATTCCTCTGCCTGTTGGGTGTCTGTCATCCTTGAGATTTCCCGGGGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCTGCCTGTTGGGTGTCTGTCATCCTTGAGATTTCCCGGGGCCAG  450

seq1  AAGAGGTCAACACGAGCTAGTGTGACAACACCTAGCTAAGCAAGGGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTCAACACGAGCTAGTGTGACAACACCTAGCTAAGCAAGGGAAAA  500

seq1  GAATTTCTCAGTGATGAGGGTCAGCCTGAACCAAGGCTGACCAGAAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCTCAGTGATGAGGGTCAGCCTGAACCAAGGCTGACCAGAAAAAC  550

seq1  AAGAGGATTCAGTTTTACCCCAAGAAGGAGGGAGAAGCTTTGTAAGCGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGATTCAGTTTTACCCCAAGAAGGAGGGAGAAGCTTTGTAAGCGGA  600

seq1  AAGAAAAGAGGACTGTCTTGGCCATGGCTCTCTTGGGACTATGTAGGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAGGACTGTCTTGGCCATGGCTCTCTTGGGACTATGTAGGAAC  650

seq1  TGTTGTCTTTCTTCCCTGTTAGTTAGCAGCTTTGGCTTAGTGGGAAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCTTTCTTCCCTGTTAGTTAGCAGCTTTGGCTTAGTGGGAAAATC  700

seq1  TAAGATTCTCAAAGCATCATGCAGTGGGGGAAAGGGTTTGGGATTTGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTCTCAAAGCATCATGCAGTGGGGGAAAGGGTTTGGGATTTGACA  750

seq1  GGCTGGGGAGAGACGTGGTATAAAATGTAATGCACGGACTCTTTAAGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGAGAGACGTGGTATAAAATGTAATGCACGGACTCTTTAAGGTG  800

seq1  GAGAACAGAACTGGGCAGTGGTGGCACACACCTTTAAACCCAGCACTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGAACTGGGCAGTGGTGGCACACACCTTTAAACCCAGCACTTGG  850

seq1  GAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCAGGACTACAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCAGGACTACAGA  900

seq1  GTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAAACCC  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTGGTCTACAGAGTGAGTCCCAGGACAGCCAGGACTACACAGAGAAACCC  950

seq1  TGTCTCGAAAAAAAACAAAACAAAACAAAACAAAACAAAACAGATGGAGA  1000
      ||||||||||||||   |||||||   ||||||||| |||||||||||||
seq2  TGTCTCGAAAAAAA--CAAACAAA--CAAACAAAAC-AAACAGATGGAGA  995

seq1  ACACATTCTGAGGCACCAGGAGGTTCGGG  1029
      |||| ||||||||||||||||||||||||
seq2  ACAC-TTCTGAGGCACCAGGAGGTTCGGG  1023

seq1: chr1_180696212_180697252
seq2: B6Ng01-273I09.g_69_1111 (reverse)

seq1  TGGAAATTTTAAAGATGAATAATTCATCA-GGCTCATAAA-GCTGGTTCA  48
      |||||| ||||| |||| |||| |||||| |||||||||| ||||| |||
seq2  TGGAAA-TTTAAGGATG-ATAA-TCATCAGGGCTCATAAAGGCTGG-TCA  46

seq1  TTTCAGCATTGCTTTTCAA-ATATCTAGGACCTAGAACTTAGAGGGTTTT  97
      ||||||||||||||||||| |  ||||||||||||| || ||||||||||
seq2  TTTCAGCATTGCTTTTCAATAATTCTAGGACCTAGACCTAAGAGGGTTTT  96

seq1  CTTCCTCCCTCTCTTCCTCCCTTCCTGCCTTCCATCTTCCA-TTTTTGTG  146
      ||||||||||||||||||||||  ||||||||||||||||| ||||||||
seq2  CTTCCTCCCTCTCTTCCTCCCT--CTGCCTTCCATCTTCCATTTTTTGTG  144

seq1  TTTCTG-AGTTTGGAACCTGGGTCCTTGCAGGTACTGTGCA-GCTGA-GC  193
      |||||| |||| ||||||||||||||||||||||||||||| ||||| ||
seq2  TTTCTGAAGTTGGGAACCTGGGTCCTTGCAGGTACTGTGCAGGCTGAGGC  194

seq1  CATAGCCACGCCC-AGCATGTATGCCTTCTGCGTGTCACCTCTCATCTAA  242
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  CATAGCCACGCCCAAGCATGTATGCTTTCTGCGTGTCACCTCTCATCTAA  244

seq1  GTCCCCCTTTTTCCCAAAAGAAAACCAAATATAGTTGTCTCTGAATCCAC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCTTTTTCCCAAAAGAAAACCAAATATAGTTGTCTCTGAATCCAC  294

seq1  AGGCTTCATACCCATGGATTCAATCAACCCTGGATCAGAATCTTCAGAAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCATACCCATGGATTCAATCAACCCTGGATCAGAATCTTCAGAAG  344

seq1  AACTTGGTCTCATGCTGGTGGTGACAGACTGTCAGCCGTGCCTGTCACTA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGTCTCATGCTGGTGGTGACAGACTGTCAGCCGTGCCTGTCACTA  394

seq1  CTCCTAAGTGGCAACTATTTACATAGCACTTACACTGGATTAAGGGTCAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAGTGGCAACTATTTACATAGCACTTACACTGGATTAAGGGTCAC  444

seq1  AACTAAGCTGGAAATGATTTACAGTATGCAGGATAAACAGGTCCTTTGCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGCTGGAAATGATTTACAGTATGCAGGATAAACAGGTCCTTTGCA  494

seq1  AACACTGTCATTTTATAGGAAGGAACTTTAGCATCACTGTTAGTGGTGTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGTCATTTTATAGGAAGGAACTTTAGCATCACTGTTAGTGGTGTC  544

seq1  CAGCATCCACAGGAGTAACTCAGTCTCATGTGGACAGCAAGAGGTCACTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCCACAGGAGTAACTCAGTCTCATGTGGACAGCAAGAGGTCACTG  594

seq1  GGCTTTGCTTTAAATACTCATCCAGATGGCACATAGGCACAATTATGAAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGCTTTAAATACTCATCCAGATGGCACATAGGCACAATTATGAAG  644

seq1  CTGAAGACACAGGATTCATGCATTCGTTCAATAAATATTTTTCAAGTATT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGACACAGGATTCATGCATTCGTTCAATAAATATTTTTCAAGTATT  694

seq1  CCCTGTGCCACATAAGGCTACAGCATCTGAAATAAGCAGACTACTTTTTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGCCACATAAGGCTACAGCATCTGAAATAAGCAGACTACTTTTTG  744

seq1  TAAGGAGCGTGGATGTAATGTGGGTTGGAATGGGAAGAGGTGGCTATGGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGCGTGGATGTAATGTGGGTTGGAATGGGAAGAGGTGGCTATGGA  794

seq1  ATGTGCACCTCAAACACAACAAAGTTACTGGAGGGTGCATGGTAGGTTGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCACCTCAAACACAACAAAGTTACTGGAGGGTGCATGGTAGGTTGA  844

seq1  AGGTGATAAATACTATGGAAGAAAAGACACAAAGTGAGCAAGGCCAAAGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATAAATACTATGGAAGAAAAGACACAAAGTGAGCAAGGCCAAAGA  894

seq1  CTGGGGTGGGGGTGTGGTGGGGGTGTCTCTGATCTCAGCTAGCTACAGAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTGGGGGTGTGGTGGGGGTGTCTCTGATCTCAGCTAGCTACAGAC  944

seq1  CTTGTGAGGAACACTGACTCAACAACAATAACACAAACAAAAGAAAAACA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAGGAACACTGACTCAACAACAATAACACAAACAAAAGAAAAACA  994

seq1  ACAGCCAAAAAAAAAAAAAAGAGAGAGAGAGAGAAATAAGGTGGAATTC  1041
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAAAAAAAAAAAAAAGAGAGAGAGAGAGAAATAAGGTGGAATTC  1043