BAC Information

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BAC

Clone NameB6Ng01-273I19
Chromosome1 (Build37)17 (Build37)
Map Location 174,665,031 - 174,665,69140,266,479 - 40,267,607
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp
Downstream geneLOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273I19.bB6Ng01-273I19.g
ACCGA075094GA075095
length1,0531,128
definitionB6Ng01-273I19.b B6Ng01-273I19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(174,665,031 - 174,665,691)(40,266,479 - 40,267,607)
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggattttg
tcaaatgctttctctgtatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacgttgatggatatctgaattaaaccat
ccctgcatccctggaatgaaacctacttggtcaggatggatgattgtttt
gatgtgttcttggattcttttagcgagaattttattgaggatttttgcat
cgatattcataagggaaattggtctgaagttctctatctttgttgggtct
ttctgtggtttaggtatcagagtaattgtggcttcatagaatgagctggg
tagagtaccttctacttctattttgtggaatagtttgtgaagaactggaa
ttagatcatctttgaaggtctgatagaactctgcactaaatccatctggt
cctgggctttttttgaatgagagacaattaatgactgcttctatttcttt
aggggatatatgactgtttagatcattaacctgatcttgatttaactttg
gtacctggtatatgtctagaaaattgtcaatttcatctaggttctccagt
tttgttcagtatagcctttgttgaaggatctgatggtgttttggatttct
tcaggatctgttgttatgtctcccttttcatctccaattttcttaattag
gatgctgcccctgtgccctctagtgagtctgtctaaggtcttatttatct
tgttgattttctcaaagaaccagctccttgattggttgattctttgaata
gttcttcttgtttccacttggttgatttcgcccatgagtttgattatttc
ctgtcatctactcctcttgggtgaatttgcttccttttgttctagagctt
ttatgtgtgtgtgttgtcaaactgctagttgtgccctccctagtttcttt
ttggagcactcagagctatgagttttctcttagaaatgctttcattctgc
ccataatttcagtttttttagacctttttaaattaccagtataagaaaat
ttt
gaattcaaatatgaagcatcacttctgtttgcatattttcatggtaaaat
gtgaacctgcagcagaaaaagccaacagtggaccaatattttcattatac
ataaagctaattgtaagaaacatggccaaatttatcttttaacctccatg
gcatatgaatttggccttaatctcaataaataaataaataaataaataaa
taaataaataaataaataaataaataaataattggtggtggtttagaccc
tgggagctctgaaggtactggttatttcatgttattgttcctcctgtggg
gctgcaaacccctccaactcctatggttctttctctagctcccccatttt
gaacctcgagctcagtccaatggatggctgagagcatccacctctgtatt
tgataggcaatggcagagatactcaggagacagctatatcaggctcttgt
catcaggcacttgttggcattagcaatagtgtctggttttggttagctgt
atgtgggatgtatccccaggttgggcagtctctggatcacctcttataaa
cttatttatttatttagtttttgtttgtttgtttgcttgttttggtttgt
aattccaaatacgtgtttttgtttgttttattttgttttgttttatatta
gatactttctgtatttacatttcaaatgttatcccctttcctggtttctt
ctatgaaaatccactatctcaggcctcctcctcctgctcaccaacttacc
cacttctatctccctgtgctggaattccactacaccacttcagcgagtgt
tcttgggatcagggtcctctcctcacattgatgttcaacaagggcacctc
attctctgcaatatatgcaggtggagccataagaccctccatgtgtactc
tttgcttggtgttttagtccctgggagctctaggggtactggtttggttc
atattcttgttcctcctatggagctgcaaagcctgtcagctccttttgtt
cattctctagcttctcattgtagaccttgtgctccagtccagtgtggctg
aaaagtaaacacctcttgcatttgtactggcagacctctcaggaacacct
atatcagttcttgttcagcagaagcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174665031_174665691
seq2: B6Ng01-273I19.b_44_701 (reverse)

seq1  GATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATA  50
      |||||||||||||||||||||||||||||||||||| || ||||||||||
seq2  GATCCTGAAGAAATCCAAAACACCATCAGATCCTTCAAC-AAAGGCTATA  49

seq1  CTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGAT  100
      || |||||||||||| ||||| || ||||| ||||| ||||| |||| ||
seq2  CTGAACAAAACTGGAGAACCTAGATGAAATTGACAATTTTCTAGACATAT  99

seq1  ACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCC  150
      |||||||||||||||| ||||| ||||| ||| |  ||||||||||||  
seq2  ACCAGGTACCAAAGTTAAATCAAGATCAGGTTAATGATCTAAACAGTCAT  149

seq1  ATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAA  200
      ||||| |||||||||||||||||||| |||||| ||||| ||  ||||||
seq2  ATATCCCCTAAAGAAATAGAAGCAGTCATTAATTGTCTCTCATTCAAAAA  199

seq1  AAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAG  250
      |||||||||||||||||| ||||||||||||||||| |||||||||||||
seq2  AAGCCCAGGACCAGATGGATTTAGTGCAGAGTTCTATCAGACCTTCAAAG  249

seq1  AAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAA  300
      | |||||||||||| |||| ||||||||||| ||||||||||||||||||
seq2  ATGATCTAATTCCAGTTCTTCACAAACTATTCCACAAAATAGAAGTAGAA  299

seq1  GGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAA  350
      ||||||||||||| |||||| ||||||||||| |||||||||||||||||
seq2  GGTACTCTACCCAGCTCATTCTATGAAGCCACAATTACTCTGATACCTAA  349

seq1  ACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTA  399

seq1  TGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAA  450
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  TGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAAAAGAATCCAA  449

seq1  GAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGG  500
      |||||||| ||| |||||||||||||||||||||||||||| ||||||||
seq2  GAACACATCAAAACAATCATCCATCCTGACCAAGTAGGTTTCATTCCAGG  499

seq1  GATGCAGGGATGGTTTAATATACGAAAATCCATCAACGTAATCCATTATA  550
      |||||||||||||||||  || |  | |||||||||||||||||| ||||
seq2  GATGCAGGGATGGTTTA--ATTCAGATATCCATCAACGTAATCCACTATA  547

seq1  TAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAA  600
      |||||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  TAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATACAGAG  597

seq1  AAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAG  650
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  AAAGCATTTGACAAAATCCAACACCCATTCATGATAAAAGTCTTGGAAAG  647

seq1  ATCAGGAATTC  661
      |||||||||||
seq2  ATCAGGAATTC  658

seq1: chr17_40266479_40267607
seq2: B6Ng01-273I19.g_66_1193

seq1  GAATTCAAATATGAAGCATCACTTCTGTTTGCATATTTTCATGGTAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATATGAAGCATCACTTCTGTTTGCATATTTTCATGGTAAAAT  50

seq1  GTGAACCTGCAGCAGAAAAAGCCAACAGTGGACCAATATTTTCATTATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCTGCAGCAGAAAAAGCCAACAGTGGACCAATATTTTCATTATAC  100

seq1  ATAAAGCTAATTGTAAGAAACATGGCCAAATTTATCTTTTAACCTCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCTAATTGTAAGAAACATGGCCAAATTTATCTTTTAACCTCCATG  150

seq1  GCATATGAATTTGGCCTTAATCTCAATAAATAAATAAATAAATAAATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGAATTTGGCCTTAATCTCAATAAATAAATAAATAAATAAATAAA  200

seq1  TAAATAAATAAATAAATAAATAAATAAATAATTGGTGGTGGTTTAGACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAAATAAATAAATAAATAATTGGTGGTGGTTTAGACCC  250

seq1  TGGGAGCTCTGAAGGTACTGGTTATTTCATGTTATTGTTCCTCCTGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCTCTGAAGGTACTGGTTATTTCATGTTATTGTTCCTCCTGTGGG  300

seq1  GCTGCAAACCCCTCCAACTCCTATGGTTCTTTCTCTAGCTCCCCCATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAAACCCCTCCAACTCCTATGGTTCTTTCTCTAGCTCCCCCATTTT  350

seq1  GAACCTCGAGCTCAGTCCAATGGATGGCTGAGAGCATCCACCTCTGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCGAGCTCAGTCCAATGGATGGCTGAGAGCATCCACCTCTGTATT  400

seq1  TGATAGGCAATGGCAGAGATACTCAGGAGACAGCTATATCAGGCTCTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGCAATGGCAGAGATACTCAGGAGACAGCTATATCAGGCTCTTGT  450

seq1  CATCAGGCACTTGTTGGCATTAGCAATAGTGTCTGGTTTTGGTTAGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGCACTTGTTGGCATTAGCAATAGTGTCTGGTTTTGGTTAGCTGT  500

seq1  ATGTGGGATGTATCCCCAGGTTGGGCAGTCTCTGGATCACCTCTTATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGATGTATCCCCAGGTTGGGCAGTCTCTGGATCACCTCTTATAAA  550

seq1  CTTATTTATTTATTTAGTTTTTGTTTGTTTGTTTGCTTGTTTTGGTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTATTTATTTAGTTTTTGTTTGTTTGTTTGCTTGTTTTGGTTTGT  600

seq1  AATTCCAAATACGTGTTTTTGTTTGTTTTATTTTGTTTTGTTTTATATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAAATACGTGTTTTTGTTTGTTTTATTTTGTTTTGTTTTATATTA  650

seq1  GATACTTTCTGTATTTACATTTCAAATGTTATCCCCTTTCCTGGTTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTTCTGTATTTACATTTCAAATGTTATCCCCTTTCCTGGTTTCTT  700

seq1  CTATGAAAATCCACTATCTCAGGCCTCCTCCTCCTGCTCACCAACTTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAAATCCACTATCTCAGGCCTCCTCCTCCTGCTCACCAACTTACC  750

seq1  CACTTCTATCTCCCTGTGCTGGAATTCCACTACACCACTTCAGCGAGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTATCTCCCTGTGCTGGAATTCCACTACACCACTTCAGCGAGTGT  800

seq1  TCTTGGGATCAGGGTCCTCTCCTCACATTGATGTTCAACAAGGGCACCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGATCAGGGTCCTCTCCTCACATTGATGTTCAACAAGGGCACCTC  850

seq1  ATTCTCTGCAATATATGCAGGTGGAGCCATAAGACCCTCCATGTGTACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGCAATATATGCAGGTGGAGCCATAAGACCCTCCATGTGTACTC  900

seq1  TTTGCTTGGTGTTTTAGTCCCTGGGAGCTCTAGGGGTACTGG-TTGGTTC  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTGCTTGGTGTTTTAGTCCCTGGGAGCTCTAGGGGTACTGGTTTGGTTC  950

seq1  ATATTCTTGTTCCTCCTATGGAGCTGCAAAGCCTGTCAGCTCCTTTTGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATATTCTTGTTCCTCCTATGGAGCTGCAAAGCCTGTCAGCTCCTTTTGTT  1000

seq1  CATTCTCTAGCTTCTCCATTGTAGACCTTGTGCT-CAGTCCAGTGGTTGG  1048
      ||||||||||||||| |||||||||||||||||| ||||||||||  |||
seq2  CATTCTCTAGCTTCT-CATTGTAGACCTTGTGCTCCAGTCCAGTG--TGG  1047

seq1  CTG-AGAGTAAACACCTC-TGCATTTGTACTGGCAGAACCTCTCAGGAGA  1096
      ||| | |||||||||||| ||||||||||||||||| ||||||||||| |
seq2  CTGAAAAGTAAACACCTCTTGCATTTGTACTGGCAG-ACCTCTCAGGA-A  1095

seq1  CACCTATATCAGTTTCTTG-TCAGCAAGAGCTTG  1129
      |||||||||||| |||||| ||||||  ||||||
seq2  CACCTATATCAG-TTCTTGTTCAGCAGAAGCTTG  1128