BAC Information

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BAC

Clone NameB6Ng01-274J22
Chromosome1 (Build37)
Map Location 189,669,186 - 189,806,405
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
Downstream geneEsrrg, 9330162B11Rik, Ush2a, Kctd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274J22.bB6Ng01-274J22.g
ACCGA075874GA075875
length1,0851,115
definitionB6Ng01-274J22.b B6Ng01-274J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(189,669,186 - 189,670,271)(189,805,323 - 189,806,405)
sequence
gaattctaattttttgtttgtagatttatgccttaaattcttaataataa
attttcctcagcatatttagcttattattctcaaaagattaaaaatcagt
tgattgaatatctccaaaattgattaagaaatagaatatattatgttggc
attatgagaataaatactaaagtcaagagcatttcaaaacagcatttcac
aagaataacattaaaaattgttagaaaattgggttggagagatggatcag
cgattaagagtacattgtccttcttgcagaggccccacattcagttctga
gcggctatgttgtatggctcacaactgtctgtaactccacctccaggtga
cctgatgccctttgtgaactctgagagcacacacacacacacacacacac
acacacacacacacaccaatagcaacaacagcaataataaatcttttaaa
aattatcagcaagtgatgaggacaatttgaaaatacaacaggattaagtc
cctagaattttgcctgagcagtaattagtatatagcttgaatgattgcgt
caagtctcttcccattactgagcctcacatttttcacttgtgaaacatga
aaaatgcagattagattaccccatcatttcttctggcattaatttaccaa
ctttataaatattcatgtatacttctgaagtatttaatacacatgaaaat
ggtttcttcttttaaagtcatttgaccttagtaataataataataaatac
tatattgatactgaataatttcatattgatagatattaatacaagttcaa
atgcttcaaactccaagatcctatttaaggatattttaccttgattttgt
tggtgcctccatgacagtgtgatacttgaaagtgtttactggaagctgga
aatggacttaaaacttcttcatgctcctgcctccatgccttctcctatgc
aatggaccgtgtagccctcaaacccggagccaaagtaaatactactaaag
ctactttcgcaaaggatctgccagccataaggaaaataacccactgtgag
gcagacgctttattcataaagtcacaataatcaca

gaattctctcctccatatggacactaagaaaggtcatttcctcccaggag
gcaacttgtccctccattgttttgcattttcatatctatttatgcatggt
tttacttctctcacgaacctgcggtcttgatgaaagtcttatctctgatg
tccacaacagagcttcggacctactagagcatcagtacttcagctcctta
ttaagtagcgggaggggtacactgcagagcatcagcctctgacttcccgt
tttctatcacgtaagtgattaatgaatatgaccccttgggtcatgagagc
aatactggcttctgtgtgcaggcttacattggtcagcttttaagtcctag
tggttgtgacccacgtcacctcaataatcgtagtgttctatgtaagtgga
tgtcctgagcagtggcttcgatagttctcctccacctctcttcctcattt
tgatctattctctatgatgccctctcacacagctaccttggttctcccaa
gggggcttcaaacagaattcagaggttttgcatctgaataccccgtctgt
tctcaatccaacccaaaccctcttttctgctttaatttgatattctgcac
ctaacagcagatgtacaaaccactgtcgatcctgaactcatggccctgct
acagtataggtaaggtcaatccattcctgctatcgtccataagtagaaaa
cggctctgcagagttgtttgcttggttggttggaaaaggccatttctgtt
tgtagttaggaaaaaaaaaaaaaaaaaaaagagaaactgcttttctgagc
taagtctctaaagatgacctgagaggacgcattcgtggtaaattagatat
cttactggcagatgggaaaggcttggactttctccaattggctgtatcct
ctttaaagcaggcactgtctagtttatgccaacggtcttcactgggcttg
tatacagtagtgactaataaggatttcatgaatgacactctgcctagtct
gtactagggtctctagccttaatgtgattctctactacagtagagctcat
taactccaatttgaatgacagaatagcatctacttttcatcttgcaacta
taaaattgaatgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_189669186_189670271
seq2: B6Ng01-274J22.b_43_1127

seq1  GAATTCTAATTTTTTGTTTGTAGATTTATGCCTTAAATTCTTAATAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATTTTTTGTTTGTAGATTTATGCCTTAAATTCTTAATAATAA  50

seq1  ATTTTCCTCAGCATATTTAGCTTATTATTCTCAAAAGATTAAAAATCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTCAGCATATTTAGCTTATTATTCTCAAAAGATTAAAAATCAGT  100

seq1  TGATTGAATATCTCCAAAATTGATTAAGAAATAGAATATATTATGTTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGAATATCTCCAAAATTGATTAAGAAATAGAATATATTATGTTGGC  150

seq1  ATTATGAGAATAAATACTAAAGTCAAGAGCATTTCAAAACAGCATTTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAGAATAAATACTAAAGTCAAGAGCATTTCAAAACAGCATTTCAC  200

seq1  AAGAATAACATTAAAAATTGTTAGAAAATTGGGTTGGAGAGATGGATCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAACATTAAAAATTGTTAGAAAATTGGGTTGGAGAGATGGATCAG  250

seq1  CGATTAAGAGTACATTGTCCTTCTTGCAGAGGCCCCACATTCAGTTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTAAGAGTACATTGTCCTTCTTGCAGAGGCCCCACATTCAGTTCTGA  300

seq1  GCGGCTATGTTGTATGGCTCACAACTGTCTGTAACTCCACCTCCAGGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTATGTTGTATGGCTCACAACTGTCTGTAACTCCACCTCCAGGTGA  350

seq1  CCTGATGCCCTTTGTGAACTCTGAGAGCACACACACACACACACACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGCCCTTTGTGAACTCTGAGAGCACACACACACACACACACACAC  400

seq1  ACACACACACACACACCAATAGCAACAACAGCAATAATAAATCTTTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACCAATAGCAACAACAGCAATAATAAATCTTTTAAA  450

seq1  AATTATCAGCAAGTGATGAGGACAATTTGAAAATACAACAGGATTAAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCAGCAAGTGATGAGGACAATTTGAAAATACAACAGGATTAAGTC  500

seq1  CCTAGAATTTTGCCTGAGCAGTAATTAGTATATAGCTTGAATGATTGCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAATTTTGCCTGAGCAGTAATTAGTATATAGCTTGAATGATTGCGT  550

seq1  CAAGTCTCTTCCCATTACTGAGCCTCACATTTTTCACTTGTGAAACATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTCTTCCCATTACTGAGCCTCACATTTTTCACTTGTGAAACATGA  600

seq1  AAAATGCAGATTAGATTACCCCATCATTTCTTCTGGCATTAATTTACCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCAGATTAGATTACCCCATCATTTCTTCTGGCATTAATTTACCAA  650

seq1  CTTTATAAATATTCATGTATACTTCTGAAGTATTTAATACACATGAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAAATATTCATGTATACTTCTGAAGTATTTAATACACATGAAAAT  700

seq1  GGTTTCTTCTTTTAAAGTCATTTGACCTTAGTAATAATAATAATAAATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTTCTTTTAAAGTCATTTGACCTTAGTAATAATAATAATAAATAC  750

seq1  TATATTGATACTGAATAATTTCATATTGATAGATATTAATACAAGTTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGATACTGAATAATTTCATATTGATAGATATTAATACAAGTTCAA  800

seq1  ATGCTTCAAACTCCAAGATCCTATTTAAGGATATTTTACCTTGATTTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCAAACTCCAAGATCCTATTTAAGGATATTTTACCTTGATTTTGT  850

seq1  TGGTGCCTCCATGACAGTGTGATACTTGAAAGTGTTTACTGGAAGCTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCTCCATGACAGTGTGATACTTGAAAGTGTTTACTGGAAGCTGGA  900

seq1  AATGGACTTAAAACTTCTTCATGCTCCTGCCTCCATGCCTTCTCCTATGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACTTAAAACTTCTTCATGCTCCTGCCTCCATGCCTTCTCCTATGC  950

seq1  AATGGACCGTGTAGCCCTCAAACCGGGAGCCAAAGTAAATACTACTAAAG  1000
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AATGGACCGTGTAGCCCTCAAACCCGGAGCCAAAGTAAATACTACTAAAG  1000

seq1  CTACTTTCGCAAGGATTCTGCCAGCCATAAGGAAAATAACCCACCTGTGA  1050
      |||||||||||| |  ||||||||||||||||||||||||||| ||||||
seq2  CTACTTTCGCAAAGGATCTGCCAGCCATAAGGAAAATAACCCA-CTGTGA  1049

seq1  GGGCAGACGCTTTATTCATAAAGTCAC-ATAATCACA  1086
       |||||||||||||||||||||||||| |||||||||
seq2  -GGCAGACGCTTTATTCATAAAGTCACAATAATCACA  1085


seq1: chr1_189805323_189806405
seq2: B6Ng01-274J22.g_67_1181 (reverse)

seq1  ---------------------------------------------GTTCA  5
                                                     |||
seq2  GTTCATTCAATTTTATAGTTGCAAGATGAAAAGTAGATGCTATTCTGTCA  50

seq1  TTCAAA-TGGAGTTTATTGAGCTCTTACTGTATGTAGAGAATCACATTAA  54
      |||||| ||||| ||| ||||||| ||||||| ||||||||||||||| |
seq2  TTCAAATTGGAG-TTAATGAGCTC-TACTGTA-GTAGAGAATCACATT-A  96

seq1  AGGCTAGAGGACCCTAGTACAGGACTAGGCAGAGTGTCATTCATGGAATC  104
      |||||||| |||||||||||| ||||||||||||||||||||||| ||||
seq2  AGGCTAGA-GACCCTAGTACA-GACTAGGCAGAGTGTCATTCATGAAATC  144

seq1  CTTATTAGTCAACTACTGTATACAAGCCCAGTGGAGACCGTTGGCATAAA  154
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  CTTATTAGTC-ACTACTGTATACAAGCCCAGTGAAGACCGTTGGCATAAA  193

seq1  CTAGACAGTGCCTGCTTTAAAGAGGATACAGCCAATTGGAG-AAGTCCAA  203
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTAGACAGTGCCTGCTTTAAAGAGGATACAGCCAATTGGAGAAAGTCCAA  243

seq1  GCCTTTCCCATCTGCCAGTAAGATTATCTAATTTACCACGAATGCGTCCT  253
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCCTTTCCCATCTGCCAGTAAGA-TATCTAATTTACCACGAATGCGTCCT  292

seq1  CTCAGGTCATCTTTAGAGACTTAGCTCAGAAAAGCAGTTTCTTTTTTTTT  303
      |||||||||||||||||||||||||||||||||||||||||       | 
seq2  CTCAGGTCATCTTTAGAGACTTAGCTCAGAAAAGCAGTTTC-------TC  335

seq1  TTTTTTTTTTTTTTTTTTTTCCTAACTACAAACAGAAATGGCCTTTTCCA  353
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTCCTAACTACAAACAGAAATGGCCTTTTCCA  385

seq1  ACCAACCAAGCAAACAACTCTGCAGAGCCGTTTTCTACTTATGGACGATA  403
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCAAGCAAACAACTCTGCAGAGCCGTTTTCTACTTATGGACGATA  435

seq1  GCAGGAATGGATTGACCTTACCTATACTGTAGCAGGGCCATGAGTTCAGG  453
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAATGGATTGACCTTACCTATACTGTAGCAGGGCCATGAGTTCAGG  485

seq1  ATCGACAGTGGTTTGTACATCTGCTGTTAGGTGCAGAATATCAAATTAAA  503
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGACAGTGGTTTGTACATCTGCTGTTAGGTGCAGAATATCAAATTAAA  535

seq1  GCAGAAAAGAGGGTTTGGGTTGGATTGAGAACAGACGGGGTATTCAGATG  553
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAAGAGGGTTTGGGTTGGATTGAGAACAGACGGGGTATTCAGATG  585

seq1  CAAAACCTCTGAATTCTGTTTGAAGCCCCCTTGGGAGAACCAAGGTAGCT  603
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCTCTGAATTCTGTTTGAAGCCCCCTTGGGAGAACCAAGGTAGCT  635

seq1  GTGTGAGAGGGCATCATAGAGAATAGATCAAAATGAGGAAGAGAGGTGGA  653
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGAGGGCATCATAGAGAATAGATCAAAATGAGGAAGAGAGGTGGA  685

seq1  GGAGAACTATCGAAGCCACTGCTCAGGACATCCACTTACATAGAACACTA  703
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACTATCGAAGCCACTGCTCAGGACATCCACTTACATAGAACACTA  735

seq1  CGATTATTGAGGTGACGTGGGTCACAACCACTAGGACTTAAAAGCTGACC  753
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTATTGAGGTGACGTGGGTCACAACCACTAGGACTTAAAAGCTGACC  785

seq1  AATGTAAGCCTGCACACAGAAGCCAGTATTGCTCTCATGACCCAAGGGGT  803
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAGCCTGCACACAGAAGCCAGTATTGCTCTCATGACCCAAGGGGT  835

seq1  CATATTCATTAATCACTTACGTGATAGAAAACGGGAAGTCAGAGGCTGAT  853
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCATTAATCACTTACGTGATAGAAAACGGGAAGTCAGAGGCTGAT  885

seq1  GCTCTGCAGTGTACCCCTCCCGCTACTTAATAAGGAGCTGAAGTACTGAT  903
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCAGTGTACCCCTCCCGCTACTTAATAAGGAGCTGAAGTACTGAT  935

seq1  GCTCTAGTAGGTCCGAAGCTCTGTTGTGGACATCAGAGATAAGACTTTCA  953
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGTAGGTCCGAAGCTCTGTTGTGGACATCAGAGATAAGACTTTCA  985

seq1  TCAAGACCGCAGGTTCGTGAGAGAAGTAAAACCATGCATAAATAGATATG  1003
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACCGCAGGTTCGTGAGAGAAGTAAAACCATGCATAAATAGATATG  1035

seq1  AAAATGCAAAACAATGGAGGGACAAGTTGCCTCCTGGGAGGAAATGACCT  1053
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCAAAACAATGGAGGGACAAGTTGCCTCCTGGGAGGAAATGACCT  1085

seq1  TTCTTAGTGTCCATATGGAGGAGAGAATTC  1083
      ||||||||||||||||||||||||||||||
seq2  TTCTTAGTGTCCATATGGAGGAGAGAATTC  1115


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