BAC Information

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BAC

Clone NameB6Ng01-274K15
Chromosome1 (Build37)6 (Build37)
Map Location 53,293,042 - 53,293,56632,512,070 - 32,513,247
singlet/doubletsingletsinglet
Overlap genePms1
Upstream geneLOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik
Downstream geneLOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b, Hecw2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274K15.bB6Ng01-274K15.g
ACCGA075908GA075909
length9851,162
definitionB6Ng01-274K15.b B6Ng01-274K15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(53,293,042 - 53,293,566)(32,512,070 - 32,513,247)
sequence
gaattcagaactcttcagctggggaatggtggtaatgaagtgttcccaca
acacagactgttgagaaggattcaactgcgtgaattcagaactcttctgc
tggggaacagggtacccgtaagtatagctttacaaggtaagtctggcctt
gaactttctaacgaaattcaagacggtctatcagaagtaaagtgggaaat
agctttacaaggtaagtctggtcttgaactttctaacgaaattcaagaca
gtctatcagaagtaaagtgggaaatagctttacaaggtatgtttggcctt
gaactttctctagtgttagaagcccttttgttccttttcacatgttatca
agtggttaaggcagggcggattctggacgaaattcgagacaatctatcag
aagtaaagcggggagagagagtaggagcaaagaggaaatatggtacacaa
aataagtatacaggcctttccacgggtcttgaacccgaggaaaagtttag
gtcaggtaagaatacctggggagagattagaaggaaggaaaagaaaaaag
aaaagaaaaaagatcaattagcggaggtctctaggagaaggaacctatac
tcatcactagatgagctcaaggagccagttcttagtagttctgaatcaga
tgaaaaggctattagggcctggaaagcgctctcccgagcaggtgaagcca
ctggacaactaacaaagatcgtccagggacctcaggagtccttctcagat
tttgtggccagagagacagaggcaggctcttgcagcctacaaggtcttat
tgtccaccctggagttgtagatcaggattataaaggggaacttcaggttc
tctgttcttgtcctcaagttgtcttttctatatcacaaagggacagaata
gctcaactaataattttgccaagcctacatggctgttttccttcctctgg
tattccttgagctgccagagggattggttctactg
gaattcacctgccctgtataacaccaagcagcccaagaacaaacagatca
gacctgtctagatcaacccagctagatcagacctgtctatagaagactgt
ctaaccagatctgccccattttgtccttctcctggtttccctaactgagt
catggagactaagatcacagaaggaaagtgaaatatgactctaggtgtca
cctttcaaagggtgttactgattgtcagctaaagtgatttaagccctgga
aaaaccctcccgtgtccttttaacatccaaaacgaatcctcttcacacca
accatcaatgttaaataaacagaagtcccccattaacctgcacctctgtg
cgtttactttgtaaaagcacacagtgtcactctcctttaaacgaacatac
taattagtgtattaataaatagctgaatggaatcaatgagacatgtaatc
aaggtctgatcgggagatggggccaggctgaagaggctgaagggaagaga
tgaaggaaaagaatcttattaacaggtttgctgagaggggacacgtaaaa
tcaatgtccggaatgcaatgaagacacagccaaaagttgacagtttggtg
ggaagctaagtgcttgccctgcctcctcccttcaacagagaagttactgg
tgagagttaatgggaccagcagggagaacagaagttaattggtgttggga
aagccattcagagatggtgtccaagatcgcagctggaagaattacccagg
acttcagtacaaaggcctaactcctagacctgtattcaaaatactaagac
caagcttgagaaccgaatgaattctcaatgaacattcgctctccaaaaga
ttctgtagtagagtcatttgtttgggggtttagtcttagtcaccccaaaa
gtctgtgctttttacccccaaggtgcctggttggagggcctgaccaagca
gccttagaggctctaagacccctattctcttctcagctcacatttcttgt
gacacacctctgagcagagcagagctctagaattgtgagagaaagcttgc
agtctgagatgactggctctgatacccactcgcctctctattggagtcag
gtgagctctgaacctgaataactcagctggggtcaccttccattctagct
gtcaaacgccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_53293042_53293566
seq2: B6Ng01-274K15.b_40_561

seq1  GAATTCAGAACTCTTCAGCTGGGGAATGGTGGTAATGAAGTGTTCCCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAACTCTTCAGCTGGGGAATGGTGGTAATGAAGTGTTCCCACA  50

seq1  ACACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACTCTTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACTCTTCTGC  100

seq1  TGGGGAACAGGGTACCCGTAAGTATAGCTTTACAAGGTAAGTCTGGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAACAGGGTACCCGTAAGTATAGCTTTACAAGGTAAGTCTGGCCTT  150

seq1  GAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAAT  200
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAACTTTCTAACGAAATTCAAGACGGTCTATCAGAAGTAAAGTGGGAAAT  200

seq1  AGCTTTACAAGGTACGTCTGGCCTTGAACTTTCTAACGAAATTCAAGACA  250
      |||||||||||||| |||||| ||||||||||||||||||||||||||||
seq2  AGCTTTACAAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACA  250

seq1  GTCTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTATGTTTGGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTATGTTTGGCCTT  300

seq1  GAACTTTTTCTAGTGTTAGAAGCCCTTTTGTTCCTTTTCACATGTTATCA  350
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTCTCTAGTGTTAGAAGCCCTTTTGTTCCTTTTCACATGTTATCA  350

seq1  AGCGGTTAAGGCAGGGCTGAAAATTCTGGATGAAATTCAAGACAATCTAT  400
      || |||||||||||||| |   |||||||| ||||||| |||||||||||
seq2  AGTGGTTAAGGCAGGGCGG---ATTCTGGACGAAATTCGAGACAATCTAT  397

seq1  CAGAAGTAAAGTGGGGAGAGAGAGTAGGAGCAAAGAGGATATATGGTACA  450
      ||||||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  CAGAAGTAAAGCGGGGAGAGAGAGTAGGAGCAAAGAGGAAATATGGTACA  447

seq1  CAAAATAAGTATACAGGCCTTTCCACGGGTCTTGAACCCGAGGAAAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAGTATACAGGCCTTTCCACGGGTCTTGAACCCGAGGAAAAGTT  497

seq1  TAGGTCAGGTAAGAATACCTGGGGA  525
      |||||||||||||||||||||||||
seq2  TAGGTCAGGTAAGAATACCTGGGGA  522

seq1: chr6_32512070_32513247
seq2: B6Ng01-274K15.g_63_1224

seq1  GAATTCACCTGCCCTG-ATAACACCAAGCAGCCCAAGAACAAACAGATCA  49
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGCCCTGTATAACACCAAGCAGCCCAAGAACAAACAGATCA  50

seq1  GACCTGTCTAGATCAACCCAGCTAGATCAGACCTGTCTATAGAAGACTGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTCTAGATCAACCCAGCTAGATCAGACCTGTCTATAGAAGACTGT  100

seq1  CTAACCAGATCTGCCCCATTTTGTCCTTCTCCTGGTTTCCCTAACTGAGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCAGATCTGCCCCATTTTGTCCTTCTCCTGGTTTCCCTAACTGAGT  150

seq1  CATGGAGACTAAGATCACAGAAGGAAAGTGAAATATGACTCTAGGTGTCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGACTAAGATCACAGAAGGAAAGTGAAATATGACTCTAGGTGTCA  200

seq1  CCTTTCAAAGGGTGTTACTGATTGTCAGCTAAAGTGATTTAAGCCCTGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAAAGGGTGTTACTGATTGTCAGCTAAAGTGATTTAAGCCCTGGA  250

seq1  AAAACCCTCCCGTGTCCTTTTAACATCCAAAACGAATCCTCTTCACACCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCTCCCGTGTCCTTTTAACATCCAAAACGAATCCTCTTCACACCA  300

seq1  ACCATCAATGTTAAATAAACAGAAGTCCCCCATTAACCTGCACCTCTGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAATGTTAAATAAACAGAAGTCCCCCATTAACCTGCACCTCTGTG  350

seq1  CGTTTACTTTGTAAAAGCACACAGTGTCACTCTCCTTTAAACGAACATAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTACTTTGTAAAAGCACACAGTGTCACTCTCCTTTAAACGAACATAC  400

seq1  TAATTAGTGTATTAATAAATAGCTGAATGGAATCAATGAGACATGTAATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGTGTATTAATAAATAGCTGAATGGAATCAATGAGACATGTAATC  450

seq1  AAGGTCTGATCGGGAGATGGGGCCAGGCTGAAGAGGCTGAAGGGAAGAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTGATCGGGAGATGGGGCCAGGCTGAAGAGGCTGAAGGGAAGAGA  500

seq1  TGAAGGAAAAGAATCTTATTAACAGGTTTGCTGAGAGGGGACACGTAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAAAAGAATCTTATTAACAGGTTTGCTGAGAGGGGACACGTAAAA  550

seq1  TCAATGTCCGGAATGCAATGAAGACACAGCCAAAAGTTGACAGTTTGGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTCCGGAATGCAATGAAGACACAGCCAAAAGTTGACAGTTTGGTG  600

seq1  GGAAGCTAAGTGCTTGCCCTGCCTCCTCCCTTCAACAGAGAAGTTACTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTAAGTGCTTGCCCTGCCTCCTCCCTTCAACAGAGAAGTTACTGG  650

seq1  TGAGAGTTAATGGGACCAGCAGGGAGAACAGAAGTTAATTGGTGTTGGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTTAATGGGACCAGCAGGGAGAACAGAAGTTAATTGGTGTTGGGA  700

seq1  AAGCCATTCAGAGATGGTGTCCAAGATCGCAGCTGGAAGAATTACCCAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATTCAGAGATGGTGTCCAAGATCGCAGCTGGAAGAATTACCCAGG  750

seq1  ACTTCAGTACAAAGGCCTAACTCCTAGACCTGTATTCAAAATACTAAGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGTACAAAGGCCTAACTCCTAGACCTGTATTCAAAATACTAAGAC  800

seq1  CAAGCTTGAGAACCGAATGAATTCTCAATGAACATTCGCTCTCCAAAAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTGAGAACCGAATGAATTCTCAATGAACATTCGCTCTCCAAAAGA  850

seq1  TTCTGTAGTAGAGTCATTTGTTTGGGGGTTTAGTCTTAGTCACCCCAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAGTAGAGTCATTTGTTTGGGGGTTTAGTCTTAGTCACCCCAAAA  900

seq1  GTCTGTGCTTTTTACCCCCAAGGTGCCTGGTTGGAGGGCCTGACCAAAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTCTGTGCTTTTTACCCCCAAGGTGCCTGGTTGGAGGGCCTGACC-AAGC  949

seq1  AGCCTTAGAGGCTCTAAGACCCCTATTCCTCTTCCTCAGCTCCACATTTC  999
      ||||||||||||||||||||||||||| ||||| ||||||| ||||||||
seq2  AGCCTTAGAGGCTCTAAGACCCCTATT-CTCTT-CTCAGCT-CACATTTC  996

seq1  TTGTGACACACCTCTGAGCAGAGCAGGAAGGCTCTAGAAATTGTTGAGAG  1049
      ||||||||||||||||||||||||||    ||||||| ||||| ||||| 
seq2  TTGTGACACACCTCTGAGCAGAGCAG---AGCTCTAG-AATTG-TGAGA-  1040

seq1  GAAAGGCTTTGCAAGTCTGAGATGAACTGGGCTCTGATTACCCACTCGCC  1099
      |||||   |||| ||||||||||| ||| |||||||| ||||||||||||
seq2  GAAAG--CTTGC-AGTCTGAGATG-ACT-GGCTCTGA-TACCCACTCGCC  1084

seq1  TCTCTATTGGAGTTCAGGTGAGCTCTGAAACGTGATTTACTCCAGCTGGG  1149
      |||||||||||| |||||||||||||| ||| ||| | ||| ||||||||
seq2  TCTCTATTGGAG-TCAGGTGAGCTCTG-AACCTGAATAACT-CAGCTGGG  1131

seq1  GGCCCACTCCTATC-AGCTG-CAAACGCCTA  1178
      | | |  |||  || ||||| ||||||||||
seq2  GTCACCTTCCATTCTAGCTGTCAAACGCCTA  1162