BAC Information

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BAC

Clone NameB6Ng01-274O11
Chromosome1 (Build37)3 (Build37)
Map Location 30,239,177 - 30,240,33899,866,001 - 99,866,332
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG433283, LOC100040665, LOC665944
Downstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274O11.bB6Ng01-274O11.g
ACCGA076084GA076085
length1,161723
definitionB6Ng01-274O11.b B6Ng01-274O11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(30,239,177 - 30,240,338)(99,866,001 - 99,866,332)
sequence
gaattcagtctctataaaattgttgttcaaagactataaacagggaataa
attctggaaactagcagccaaagcctgggaatttgcagttcatatagatc
agccttctagataccttgaaaggtgaacaaaatagagagaagtagagata
gagtgtatcccatggaggatgtttaaacatgttggtgagtcagaggtttg
agggattgaacaatatcatttcctgatgagaaagccagaaatttcatgct
gtgaaaaaattctctccatctggttctctcaggatggtatcttattgaaa
ttcttaataggattctcctaaattttttttgaccttttaaaaaatgcctt
tgccaacttgagagagtgcaaagttgaactcctaaacctatatctccctt
ttgcatgagatgttagtagaatatgactgtcagaaataaatagtcacaca
tttaatatccctgctcagctgggtcatgaaatgacagcctcacatcccat
cattcaaatgaggacaggtagtagagtagcaggctactcatgaggaaata
attattcctttggagagaaaaactgtttttactgtatgattttaatgatt
tatttcaatctagtaggtttcataaaatgagtaaaaatgaattaatgatg
taaatagttattataaattccaaaagttagagaaatgcacaggcacaata
attttgtatccagaaatcttagagtgaggaggaagataataaatttgcat
ggaatatttggaaaagtgtgaacacaaaattattaaaacataaacttata
caacaatctaaatgtaaaatgatgatttgaaactttgttgtgttacagga
acaaactcagtacttagtgttctaactgaatttatatgtaaattctaagg
aaagatgcaaactaagatgtcttcattacttgtaggaatgcttggtgtcc
tgttttccctttatataatccttgaaacagaacagattttaagttttttg
tgcagattaatcttttgcagaagtgcatctaatgggaaagaaaacaaagt
agatcaaaagaatgagaacaaaggatgtcatgacattgaggttaacctgt
tttgtcccacctgcttttaacactccccatgaactgagaaaatagatttg
ccattgattga
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagggatccattccataatcagcttccaaacgctgaca
ccattgcacacactagcaagattttgctgaaaggacctagatagagctct
ctctctctctccctctctctctctctctctctctctctctctctctcttc
ttttgttgttgtttttgttttgttttgttttgtttttttgttatgtttgt
tttgttttttcgagacagggtttctctgtatagccctggctgtcctgcag
ttcactttgtagaccaggctggcctcaaaatcagaaatctgcctgcctct
gcctcccgagtgtgctgggattaaaggcgtgcaccaccaggaggctatgc
caaggcctagcaaacacagaagtggatgctcacagtcagctattggatgg
atcacagggcccccagtggaggagctagaggaagtacccaaggagctaaa
gggatcttcaaccctataggtggaacaatattatgaactagccagtaccc
ctgagctattgactctagctgcatatgtatcaaaagatgtcctagttggc
catcactggaaagagaggcccattggacttgcaaacttttatatgcccca
ttacaggggaatgccagggccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_30239177_30240338
seq2: B6Ng01-274O11.b_43_1203 (reverse)

seq1  TCAATCAATGCAAAATCTATTTTCTCAG-TCATGGGGAGTGTTTAAAAGC  49
      ||||||||||  |||||||||||||||| |||||||||||| ||||||||
seq2  TCAATCAATGGCAAATCTATTTTCTCAGTTCATGGGGAGTG-TTAAAAGC  49

seq1  AAGGTGAGAC-AAACAGGGTTACCTCAATGTTCATGACATCCTTTG-TCT  97
       ||||| ||| ||||||| | ||||||||| ||||||||||||||| |||
seq2  -AGGTGGGACAAAACAGGTTAACCTCAATG-TCATGACATCCTTTGTTCT  97

seq1  CA-TCTTTTGATCTACTTTGTTTTCTTTCCCCATTAGATGCACTTCTGCA  146
      || ||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CATTCTTTTGATCTACTTTGTTTTCTTT-CCCATTAGATGCACTTCTGCA  146

seq1  AAAGATTAATCTGCAC-AAATACTTAAAATCTTGTTCTGTTTCAAGGATT  195
      |||||||||||||||| ||| |||||||||| ||||||||||||||||||
seq2  AAAGATTAATCTGCACAAAAAACTTAAAATC-TGTTCTGTTTCAAGGATT  195

seq1  ATATAAAGGGAAAACAGGACACCAAGCATTCCTACAAGTAATGAAGACAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGGGAAAACAGGACACCAAGCATTCCTACAAGTAATGAAGACAT  245

seq1  CTTAGTTTGCATCTTTCCTTAGAATTTACATATAAATTCAGTTAGAACAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTTGCATCTTTCCTTAGAATTTACATATAAATTCAGTTAGAACAC  295

seq1  TAAGTACCTGAGTTTGTTCCTGTAACACAACAAAGTTTCAAATCATCATT  345
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTA-CTGAGTTTGTTCCTGTAACACAACAAAGTTTCAAATCATCATT  344

seq1  TTACATTTAGATTGTTGTATAAGTTTATGTTTTAATAATTTTGTGTTCAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTAGATTGTTGTATAAGTTTATGTTTTAATAATTTTGTGTTCAC  394

seq1  ACTTTTCCAAATATTCCATGCAAATTTATTATCTTCCTCCTCACTCTAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCCAAATATTCCATGCAAATTTATTATCTTCCTCCTCACTCTAAG  444

seq1  ATTTCTGGATACAAAATTATTGTGCCTGTGCATTTCTCTAACTTTTGGAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGATACAAAATTATTGTGCCTGTGCATTTCTCTAACTTTTGGAA  494

seq1  TTTATAATAACTATTTACATCATTAATTCATTTTTACTCATTTTATGAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATAACTATTTACATCATTAATTCATTTTTACTCATTTTATGAAA  544

seq1  CCTACTAGATTGAAATAAATCATTAAAATCATACAGTAAAAACAGTTTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTAGATTGAAATAAATCATTAAAATCATACAGTAAAAACAGTTTTT  594

seq1  CTCTCCAAAGGAATAATTATTTCCTCATGAGTAGCCTGCTACTCTACTAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAAAGGAATAATTATTTCCTCATGAGTAGCCTGCTACTCTACTAC  644

seq1  CTGTCCTCATTTGAATGATGGGATGTGAGGCTGTCATTTCATGACCCAGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCATTTGAATGATGGGATGTGAGGCTGTCATTTCATGACCCAGC  694

seq1  TGAGCAGGGATATTAAATGTGTGACTATTTATTTCTGACAGTCATATTCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGGGATATTAAATGTGTGACTATTTATTTCTGACAGTCATATTCT  744

seq1  ACTAACATCTCATGCAAAAGGGAGATATAGGTTTAGGAGTTCAACTTTGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACATCTCATGCAAAAGGGAGATATAGGTTTAGGAGTTCAACTTTGC  794

seq1  ACTCTCTCAAGTTGGCAAAGGCATTTTTTAAAAGGTCAAAAAAAATTTAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTCAAGTTGGCAAAGGCATTTTTTAAAAGGTCAAAAAAAATTTAG  844

seq1  GAGAATCCTATTAAGAATTTCAATAAGATACCATCCTGAGAGAACCAGAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCCTATTAAGAATTTCAATAAGATACCATCCTGAGAGAACCAGAT  894

seq1  GGAGAGAATTTTTTCACAGCATGAAATTTCTGGCTTTCTCATCAGGAAAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAATTTTTTCACAGCATGAAATTTCTGGCTTTCTCATCAGGAAAT  944

seq1  GATATTGTTCAATCCCTCAAACCTCTGACTCACCAACATGTTTAAACATC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGTTCAATCCCTCAAACCTCTGACTCACCAACATGTTTAAACATC  994

seq1  CTCCATGGGATACACTCTATCTCTACTTCTCTCTATTTTGTTCACCTTTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGGGATACACTCTATCTCTACTTCTCTCTATTTTGTTCACCTTTC  1044

seq1  AAGGTATCTAGAAGGCTGATCTATATGAACTGCAAATTCCCAGGCTTTGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATCTAGAAGGCTGATCTATATGAACTGCAAATTCCCAGGCTTTGG  1094

seq1  CTGCTAGTTTCCAGAATTTATTCCCTGTTTATAGTCTTTGAACAACAATT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGTTTCCAGAATTTATTCCCTGTTTATAGTCTTTGAACAACAATT  1144

seq1  TTATAGAGACTGAATTC  1162
      |||||||||||||||||
seq2  TTATAGAGACTGAATTC  1161

seq1: chr3_99866001_99866332
seq2: B6Ng01-274O11.g_327_788 (reverse)

seq1  TTGGCCCTGGCATTCCCCTGTACTGGGACATGGGGAA---TGCTAG----  43
      |||||||||||||||||||||| |||| |||    ||   ||| ||    
seq2  TTGGCCCTGGCATTCCCCTGTAATGGGGCATATAAAAGTTTGCAAGTCCA  50

seq1  ----------------------GGCCAA----------------------  49
                            ||||||                      
seq2  ATGGGCCTCTCTTTCCAGTGATGGCCAACTAGGACATCTTTTGATACATA  100

seq1  -GAAGCAGGAGTGGGTGGGT-AGGGGAGC---------------------  76
       | |||  ||||   | | | |||||  |                     
seq2  TGCAGCTAGAGTCAATAGCTCAGGGGTACTGGCTAGTTCATAATATTGTT  150

seq1  --------AGGGTGGAGG-------GAGGGTATAGGGAACTTTCAGGATA  111
              ||||| || |        ||    | ||| |||| |    ||
seq2  CCACCTATAGGGTTGAAGATCCCTTTAGCTCCTTGGGTACTTCC--TCTA  198

seq1  GCATTTGAAATG-------TAT-ATGAAGAAAATATCT-AATAAAAAAAA  152
      ||   |  | ||       | | ||  |   |||| || | |   |  | 
seq2  GCTCCTCCACTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCAT  248

seq1  GAAAGAAAGTGTAT-------CTTGTC--AGGC-GGTGGTGACGCACACC  192
        |     |||| |       |||| |  || |   |||||  |||| ||
seq2  CCACTTCTGTGTTTGCTAGGCCTTGGCATAGCCTCCTGGTGGTGCACGCC  298

seq1  TTTAATCCCAG--CACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTG  240
      |||||||||||  |||| ||||||||||||||||||||||||||| ||||
seq2  TTTAATCCCAGCACACTCGGGAGGCAGAGGCAGGCAGATTTCTGATTTTG  348

seq1  AGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGAGCTACACAG  290
      ||||||||||||||||||||||||  | |||||||||||| |||| ||||
seq2  AGGCCAGCCTGGTCTACAAAGTGAACTGCAGGACAGCCAGGGCTATACAG  398

seq1  AGAAACCCCGTCT----------------------CAAAAAAAAAAAACA  318
      |||||||| ||||                      |||||||| ||||||
seq2  AGAAACCCTGTCTCGAAAAAACAAAACAAACATAACAAAAAAACAAAACA  448

seq1  AAACAAAACAAAAA  332
      ||||||||||||||
seq2  AAACAAAACAAAAA  462