BAC Information

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BAC

Clone NameB6Ng01-274O23
Chromosome1 (Build37)
Map Location 100,893,015 - 101,042,799
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
Downstream geneC230078M14Rik, LOC633295
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274O23.bB6Ng01-274O23.g
ACCGA076106GA076107
length1,0241,141
definitionB6Ng01-274O23.b B6Ng01-274O23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,893,015 - 100,894,041)(101,041,663 - 101,042,799)
sequence
gaattcagcactccactcttgcttgtcttcagtatgctgtacagaaactg
ggcagagtactaacgttgctacagaacagtggaaaatgctatcttcagat
gctcactgacaacctgcttttcttttcttgggatggccctaccatagcat
ttgccatcatatttatctattaggtatggtgtcctgattctactcaacag
agagagtttctcttatattgaatctaaagaaatttcatttgtcaatactt
gctgcaatgaatagtttttactttttcttgtaccctttaattcatattac
tatttctacagaaacatgaaattatctacaaatgtttctatagtcaaatc
tgttcaccttctccttttactattagtaacattgtctcaatgatattttt
gggtagctatttttgttatttaacagtcacagttttcttagactgatgat
agaagttaaattttaatatctttgataataccatctcaaagatctccaat
gtctttctgcttttcattgtaccacactgttgtgggaaataatttttaaa
aagcagtaccatctcatgataaacccagctactctctgccctggttgtcc
ttgccacctctgcctctaggctagccccatgcagcaacagaattggatgt
cccagatctggtttgcttgcctcagaactgctcattctttctcagccatc
tcccctctgtggctagttgtcacaaatctccttaacctagcaaatcgaac
tctaaaaacttataattactcagtcaaatttttatatcaataaattctca
attcataaaatatccacacaataatttcagagccagtagatgagtatata
aattgcccacctcgataagacaaattgtcctgtaattatctatcccttat
atcatattcatagttacaagtggctatttaaagccaagctgaatctggat
tgtcctgttcttcttccatcttcttcttctccttgcctctgtctctccaa
accttagatctgcctcccctttct

gaattcaaggagacttctaaacaaagaaatgaaatttggcctgcagtcat
ggaaacaaaagacactgtggcttaaggtagacatagaaagaattctgtaa
agttcacatatgaatcttagacaatgtacaaatcaatttcttcatatttc
ctgtgaacagctcgaatttcttatttggtagccttcaatagctaatgtat
tcttcgacaaaatcaaggtccagtttgctgtttaagtcctcatcatgaac
agacagtatggaattcttttgtaaatagtcctcaaggactgtgtgaattt
ttaacatctgctatgcaagtcaacagagcatattaaatgcagtttaaaca
cacaaagcttctcaaaccttctctagggaccttccctactttccctaaca
gctgtgtctctgatgaaactgaaggttttggataaatataaagttttact
caacctgttaccagtagcaaagcatctgtctcatatatatgcatgtgtgt
gtgtgtgtgtgtgtgtgcgcacatgtggacgtgtgtatataatcttttac
attatacatataaattatctatataatcttataaattatatatccttcac
atagatacatagatgactagggaagagcaagattggtattactggacagg
cttgcagtataacaacactccagagcttagcataactgactacatggtag
aaatgttattctggctgaaaatctgcatatatatgtatgcattggctctt
tcaggaaaaaaaaagtatataacaacactaaatgaaaaaattactagtac
tatgaagtagaaaccatcccaaggtacactataaattcagggttggggtc
tttcagttctatctatgaagaattatagtcactttaaagttaagaaaaat
aaatctgtgtaatcaaattcaagcagtatgataggaaatggagaaatgga
tcaggtgttaaaagtctgactgttctacaaagaacttgaattcagtttcc
tatcatgcaagttggctgggttaacatgccctggttactcagaattcaga
gcatctatcaccattttctaggctttgtgggcagtccatacattcggtgg
taaaatataaggattccactggttcaggtttcgtgtctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_100893015_100894041
seq2: B6Ng01-274O23.b_49_1072

seq1  GAATTCAGCACTCCACTCTTGCTTGTCTTCAGTATGCTGTACAGAAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCACTCCACTCTTGCTTGTCTTCAGTATGCTGTACAGAAACTG  50

seq1  GGCAGAGTACTAACGTTGCTACAGAACAGTGGAAAATGCTATCTTCAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGTACTAACGTTGCTACAGAACAGTGGAAAATGCTATCTTCAGAT  100

seq1  GCTCACTGACAACCTGCTTTTCTTTTCTTGGGATGGCCCTACCATAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTGACAACCTGCTTTTCTTTTCTTGGGATGGCCCTACCATAGCAT  150

seq1  TTGCCATCATATTTATCTATTAGGTATGGTGTCCTGATTCTACTCAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATCATATTTATCTATTAGGTATGGTGTCCTGATTCTACTCAACAG  200

seq1  AGAGAGTTTCTCTTATATTGAATCTAAAGAAATTTCATTTGTCAATACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTTTCTCTTATATTGAATCTAAAGAAATTTCATTTGTCAATACTT  250

seq1  GCTGCAATGAATAGTTTTTACTTTTTCTTGTACCCTTTAATTCATATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAATGAATAGTTTTTACTTTTTCTTGTACCCTTTAATTCATATTAC  300

seq1  TATTTCTACAGAAACATGAAATTATCTACAAATGTTTCTATAGTCAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTACAGAAACATGAAATTATCTACAAATGTTTCTATAGTCAAATC  350

seq1  TGTTCACCTTCTCCTTTTACTATTAGTAACATTGTCTCAATGATATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACCTTCTCCTTTTACTATTAGTAACATTGTCTCAATGATATTTTT  400

seq1  GGGTAGCTATTTTTGTTATTTAACAGTCACAGTTTTCTTAGACTGATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCTATTTTTGTTATTTAACAGTCACAGTTTTCTTAGACTGATGAT  450

seq1  AGAAGTTAAATTTTAATATCTTTGATAATACCATCTCAAAGATCTCCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTAAATTTTAATATCTTTGATAATACCATCTCAAAGATCTCCAAT  500

seq1  GTCTTTCTGCTTTTCATTGTACCACACTGTTGTGGGAAATAATTTTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCTGCTTTTCATTGTACCACACTGTTGTGGGAAATAATTTTTAAA  550

seq1  AAGCAGTACCATCTCATGATAAACCCAGCTACTCTCTGCCCTGGTTGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTACCATCTCATGATAAACCCAGCTACTCTCTGCCCTGGTTGTCC  600

seq1  TTGCCACCTCTGCCTCTAGGCTAGCCCCATGCAGCAACAGAATTGGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACCTCTGCCTCTAGGCTAGCCCCATGCAGCAACAGAATTGGATGT  650

seq1  CCCAGATCTGGTTTGCTTGCCTCAGAACTGCTCATTCTTTCTCAGCCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATCTGGTTTGCTTGCCTCAGAACTGCTCATTCTTTCTCAGCCATC  700

seq1  TCCCCTCTGTGGCTAGTTGTCACAAATCTCCTTAACCTAGCAAATCGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCTGTGGCTAGTTGTCACAAATCTCCTTAACCTAGCAAATCGAAC  750

seq1  TCTAAAAACTTATAATTACTCAGTCAAATTTTTATATCAATAAATTCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAACTTATAATTACTCAGTCAAATTTTTATATCAATAAATTCTCA  800

seq1  ATTCATAAAATATCCACACAATAATTTCAGAGCCAGTAGATGAGTATATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAAAATATCCACACAATAATTTCAGAGCCAGTAGATGAGTATATA  850

seq1  AATTGCCCACCTCGATAAGACAAATTGTCCTGTAATTATCTATCCCTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCCACCTCGATAAGACAAATTGTCCTGTAATTATCTATCCCTTAT  900

seq1  ATCATATTCATAGTTACAAGTGGCTATTTAAAGCCAAGCTGAATCTGGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATTCATAGTTACAAGTGGCTATTTAAAGCCAAGCTGAATCTGGAT  950

seq1  TGTCCTGTTCTTCTTCCATCTTCCTTCCTTCTCCCTTGCCTCTGTCTCTC  1000
      |||||||||||||||||||||||  | ||||| |||||||||||||||||
seq2  TGTCCTGTTCTTCTTCCATCTTC--TTCTTCT-CCTTGCCTCTGTCTCTC  997

seq1  CAAACCTTAGATCTGCCTCCCCTTTCT  1027
      |||||||||||||||||||||||||||
seq2  CAAACCTTAGATCTGCCTCCCCTTTCT  1024


seq1: chr1_101041663_101042799
seq2: B6Ng01-274O23.g_67_1207 (reverse)

seq1  GGGAGACA--GAACGTG-ACCAGTGAAATACTT-TATATTTACA-CGAAT  45
      ||||||||   ||| || ||||||| ||| ||| ||| ||  || |||||
seq2  GGGAGACACGAAACCTGAACCAGTGGAATCCTTATATTTTACCACCGAAT  50

seq1  GTAATGGACTTGCCCACAAAGGCTAGAAAATGGTGATAGATTGCTCTGGA  95
      || |||||| ||||||||||| |||||||||||||||||| ||||||| |
seq2  GT-ATGGAC-TGCCCACAAAGCCTAGAAAATGGTGATAGA-TGCTCTGAA  97

seq1  TCTGGAGTAA-CAGGGCATTGTAAACCAGCCAACTTGCATGATAGG-AAC  143
      |   |||||| ||||||||  ||| ||||||||||||||||||||| |||
seq2  TTCTGAGTAACCAGGGCATGTTAACCCAGCCAACTTGCATGATAGGAAAC  147

seq1  TGAATTCAAGTTCTTTGTAAGAACAGTCAGGACTTTTAACACCTGATCCA  193
      |||||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  TGAATTCAAGTTCTTTGT-AGAACAGTCA-GACTTTTAACACCTGATCCA  195

seq1  TTTCT-CATTTCCTATCATACTTGCTTGAATTTGATTACACAGATTTTAT  242
      ||||| ||||||||||||||| |||||||||||||||||||||| |||||
seq2  TTTCTCCATTTCCTATCATAC-TGCTTGAATTTGATTACACAGA-TTTAT  243

seq1  TTTTCTTAACTTTAAAGTGACTATAATTCTTCATAGATAGAACTG-AAGA  291
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTTCTTAACTTTAAAGTGACTATAATTCTTCATAGATAGAACTGAAAGA  293

seq1  -CCCAACCCTGAATTTATAGTGTACCTT-GGATGGTTTCTACTTCATAGT  339
       ||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCCCAACCCTGAATTTATAGTGTACCTTGGGATGGTTTCTACTTCATAGT  343

seq1  ACTAGTAATTTTTTCATTTAGTGTTGTTATATACTTTTTTTTTCCTGAAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTAATTTTTTCATTTAGTGTTGTTATATACTTTTTTTTTCCTGAAA  393

seq1  GAGCCAATGCATACATATATATGCAGATTTTCAGCCAGAATAACATTTCT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAATGCATACATATATATGCAGATTTTCAGCCAGAATAACATTTCT  443

seq1  ACCATGTAGTCAGTTATGCTAAGCTCTGGAGTGTTGTTATACTGCAAGCC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTAGTCAGTTATGCTAAGCTCTGGAGTGTTGTTATACTGCAAGCC  493

seq1  TGTCCAGTAATACCAATCTTGCTCTTCCCTAGTCATCTATGTATCTATGT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGTAATACCAATCTTGCTCTTCCCTAGTCATCTATGTATCTATGT  543

seq1  GAAGGATATATAATTTATAAGATTATATAGATAATTTATATGTATAATGT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATATATAATTTATAAGATTATATAGATAATTTATATGTATAATGT  593

seq1  AAAAGATTATATACACACGTCCACATGTGCGCACACACACACACACACAC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTATATACACACGTCCACATGTGCGCACACACACACACACACAC  643

seq1  ACACATGCATATATATGAGACAGATGCTTTGCTACTGGTAACAGGTTGAG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCATATATATGAGACAGATGCTTTGCTACTGGTAACAGGTTGAG  693

seq1  TAAAACTTTATATTTATCCAAAACCTTCAGTTTCATCAGAGACACAGCTG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTTATATTTATCCAAAACCTTCAGTTTCATCAGAGACACAGCTG  743

seq1  TTAGGGAAAGTAGGGAAGGTCCCTAGAGAAGGTTTGAGAAGCTTTGTGTG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAAAGTAGGGAAGGTCCCTAGAGAAGGTTTGAGAAGCTTTGTGTG  793

seq1  TTTAAACTGCATTTAATATGCTCTGTTGACTTGCATAGCAGATGTTAAAA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACTGCATTTAATATGCTCTGTTGACTTGCATAGCAGATGTTAAAA  843

seq1  ATTCACACAGTCCTTGAGGACTATTTACAAAAGAATTCCATACTGTCTGT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACACAGTCCTTGAGGACTATTTACAAAAGAATTCCATACTGTCTGT  893

seq1  TCATGATGAGGACTTAAACAGCAAACTGGACCTTGATTTTGTCGAAGAAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATGAGGACTTAAACAGCAAACTGGACCTTGATTTTGTCGAAGAAT  943

seq1  ACATTAGCTATTGAAGGCTACCAAATAAGAAATTCGAGCTGTTCACAGGA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGCTATTGAAGGCTACCAAATAAGAAATTCGAGCTGTTCACAGGA  993

seq1  AATATGAAGAAATTGATTTGTACATTGTCTAAGATTCATATGTGAACTTT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAAGAAATTGATTTGTACATTGTCTAAGATTCATATGTGAACTTT  1043

seq1  ACAGAATTCTTTCTATGTCTACCTTAAGCCACAGTGTCTTTTGTTTCCAT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTCTTTCTATGTCTACCTTAAGCCACAGTGTCTTTTGTTTCCAT  1093

seq1  GACTGCAGGCCAAATTTCATTTCTTTGTTTAGAAGTCTCCTTGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCAGGCCAAATTTCATTTCTTTGTTTAGAAGTCTCCTTGAATTC  1141


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