BAC Information

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BAC

Clone NameB6Ng01-275E09
Chromosome1 (Build37)
Map Location 141,726,860 - 141,728,016
singlet/doubletsinglet
Overlap geneBC026782
Upstream geneLhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b, Crb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403
Downstream geneLOC545399, EG545367, Cfh, Kcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275E09.bB6Ng01-275E09.g
ACCGA076357GA076358
length1,1681,194
definitionB6Ng01-275E09.b B6Ng01-275E09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcataccagagaggaacacatacaacaggaggagagagaggaaacc
tgactgattcgttaaatatgtgaagatgcattcatttcaatgccaatttt
acatttatcaatagaaataaatggtatctgctgtttagtttttatattct
taatgttagtgacattgaatatttctcattatttatatctgcttcttttc
agaaaagacatgctcacctccttatattctaaatggtatctacacacctc
acaggattatacacaaaagtgatgatgaaatcagatatgaatgtaattat
ggcttctatcctgtaactggatcaactgtttcaaagtgtacacccactgg
ctggatccctgttccaagatgtacctgtaagcttcacttacgtctttaat
ctccatgatcctgaaattagcctattcactatgcacagatgaaaatacag
taacagcaaacatttcatttttatttatgtaaaacccttagaaatatttt
agttttaaaagtaaatatttaatgtaatagtataggtaatattagaattt
aagattccaagtaatatttaaaatacattataaaaaactaaaaattttaa
tttactgcaccttaaataaatatatgtgaataaatacatttttctttttt
ctaattaataattttctaagatttgtaataaattattgggtaagaatatt
gtcatataaaaatttattttacttatttatttgcatcatagtaaatctca
gtaatatttgcctcataacaaacctttgttgtctcttcgtttctgtcagc
tagctttgaatatgactcagctactggctctgcatcagtgtgttgctgtc
agatattgttgattgtcagtcatcacgtgactttgctaggcactatgtcc
aacatgccacacacactaggattgggcaagtgagctcagtttccttatca
gataagcctctgcataggttgtttcacaaaagctaacttgccttggagta
ctgatcatagatacagtaggagtttagaatccatcatgagaatacatgga
gcataccatgtttttggaacatgggctgttttctttaatatactggagtt
caacattgcatggtgaagaaaggaaaatatgctccctatctgggagagga
ggtgctttgaccgatgac
gaattcccctcctgcagtgaggacagatttcaggggagcaattctactgt
ctgtcttttgctttgtaaggtcggtaggatggcagcagtgagctgcatta
gtgttctcataagacaaatggaacccctgcttgagaatctccaacaattc
tactagctgtttttagtagcatatccacaaaatcctgaaaacgttcatca
ggggcctgtttgaaaccaattaaatttccactgagatctgctttccagtc
taggggggttaaaatttgcttctaacactgtatttaataaagcttgtgta
aagggtggcagcaagcacatactggccacagttgtttttaactcttatta
ccttgtaatcatcctaattacaatatatgggtgaattaagaatcctgagc
tgtgatcacactataaattgcagtcagtggaacactggcaatttaaccat
aatctttaagtttcttttgcaatattagaacataaccataacttttgtgc
cgcaggtgaacctcacttgggtcctcgatccacaggcaaaacttgggttc
cagttacaagtggacaaggagttgttgagaagggggtgacaaacagacag
gacacaagggagtgtggatctgaatgtatatttgtctcaaaatgagtatc
agttttataatacagaaaacaaaggagtcagatatcacagcaggcaaggt
acatcaaagtatctcacacaaaacagaggaatgcctacaaaggactggca
ggaaccaactgggataaaattcaatgttaataactgggatcaaaagcagc
cccacctaatgttggcttaatcttagaagccagggcaagggcttcatacc
cttgccatagttccaattctagtctattgtatagtccaccttccccctag
gccattgtaaattcctgtgtacggtgtaactcagctatctatatttctaa
gtatttactctagttccttctagacacacctttcttctctagataatggt
aaatttcctgcatgtgggagtagcttgccctgagatttctactctagtag
tagatagtatgcctgatttctctccttatctctcttacaatactagagcc
agtctgaatgttcactggataggccacatctactggaattcaagaccatg
tcgggctctagaatggcctaaggaaactggggtggaggagataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_141726860_141728016
seq2: B6Ng01-275E09.b_42_1209 (reverse)

seq1  GTCATCGTTCAAAGCAACT-CTCT-CCAGATAGAGAAACATAATTTCC-T  47
      ||||||| |||||||| || |||| |||||||| | | |||| ||||| |
seq2  GTCATCGGTCAAAGCACCTCCTCTCCCAGATAG-GGAGCATATTTTCCTT  49

seq1  TCTTCA-CATGC-ATGTTGAACT-CAGTATAT--AAG-AAACAG-CCATG  90
      |||||| ||||| |||||||||| ||||||||  ||| |||||| |||||
seq2  TCTTCACCATGCAATGTTGAACTCCAGTATATTAAAGAAAACAGCCCATG  99

seq1  T--CCAAAACATGGTATGCTCCATGTA-TCTCATGGATGGATTCTAAACT  137
      |  | |||||||||||||||||||||| |||||| |||||||||||||||
seq2  TTCCAAAAACATGGTATGCTCCATGTATTCTCAT-GATGGATTCTAAACT  148

seq1  CCTACTGTATCTATGATCAGTAACTCCAAGGCAAGTTAGCTTTTGTGAAA  187
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCTACTGTATCTATGATCAGT-ACTCCAAGGCAAGTTAGCTTTTGTGAAA  197

seq1  CAACCTATGCAGAGGCTTATCTGATAAGG-AACTGAGCTCACTTGCCCAA  236
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAACCTATGCAGAGGCTTATCTGATAAGGAAACTGAGCTCACTTGCCCAA  247

seq1  TCCTAGTGTGTGTGGCATGTTGGACATAGTGCCTAGCAAAGTCACCTGAT  286
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCCTAGTGTGTGTGGCATGTTGGACATAGTGCCTAGCAAAGTCACGTGAT  297

seq1  GACTGACAATCAACAATATCTGACAGCAACACACTGATGCAGAGCCAGTA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACAATCAACAATATCTGACAGCAACACACTGATGCAGAGCCAGTA  347

seq1  GCTGAGTCATATTCAAAGCTAGCTGACAGAAACGAAGAGACAACAAAGGT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTCATATTCAAAGCTAGCTGACAGAAACGAAGAGACAACAAAGGT  397

seq1  TTGTTATGAGGCAAATATTACTGAGATTTACTATGATGCAAATAAATAAG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATGAGGCAAATATTACTGAGATTTACTATGATGCAAATAAATAAG  447

seq1  TAAAATAAATTTTTATATGACAATATTCTTACCCAATAATTTATTACAAA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAATTTTTATATGACAATATTCTTACCCAATAATTTATTACAAA  497

seq1  TCTTAGAAAATTATTAATTAGAAAAAAGAAAAATGTATTTATTCACATAT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAAAATTATTAATTAGAAAAAAGAAAAATGTATTTATTCACATAT  547

seq1  ATTTATTTAAGGTGCAGTAAATTAAAATTTTTAGTTTTTTATAATGTATT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTAAGGTGCAGTAAATTAAAATTTTTAGTTTTTTATAATGTATT  597

seq1  TTAAATATTACTTGGAATCTTAAATTCTAATATTACCTATACTATTACAT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATTACTTGGAATCTTAAATTCTAATATTACCTATACTATTACAT  647

seq1  TAAATATTTACTTTTAAAACTAAAATATTTCTAAGGGTTTTACATAAATA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTACTTTTAAAACTAAAATATTTCTAAGGGTTTTACATAAATA  697

seq1  AAAATGAAATGTTTGCTGTTACTGTATTTTCATCTGTGCATAGTGAATAG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAATGTTTGCTGTTACTGTATTTTCATCTGTGCATAGTGAATAG  747

seq1  GCTAATTTCAGGATCATGGAGATTAAAGACGTAAGTGAAGCTTACAGGTA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTTCAGGATCATGGAGATTAAAGACGTAAGTGAAGCTTACAGGTA  797

seq1  CATCTTGGAACAGGGATCCAGCCAGTGGGTGTACACTTTGAAACAGTTGA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGGAACAGGGATCCAGCCAGTGGGTGTACACTTTGAAACAGTTGA  847

seq1  TCCAGTTACAGGATAGAAGCCATAATTACATTCATATCTGATTTCATCAT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTACAGGATAGAAGCCATAATTACATTCATATCTGATTTCATCAT  897

seq1  CACTTTTGTGTATAATCCTGTGAGGTGTGTAGATACCATTTAGAATATAA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTGTGTATAATCCTGTGAGGTGTGTAGATACCATTTAGAATATAA  947

seq1  GGAGGTGAGCATGTCTTTTCTGAAAAGAAGCAGATATAAATAATGAGAAA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGAGCATGTCTTTTCTGAAAAGAAGCAGATATAAATAATGAGAAA  997

seq1  TATTCAATGTCACTAACATTAAGAATATAAAAACTAAACAGCAGATACCA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAATGTCACTAACATTAAGAATATAAAAACTAAACAGCAGATACCA  1047

seq1  TTTATTTCTATTGATAAATGTAAAATTGGCATTGAAATGAATGCATCTTC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTATTGATAAATGTAAAATTGGCATTGAAATGAATGCATCTTC  1097

seq1  ACATATTTAACGAATCAGTCAGGTTTCCTCTCTCTCCTCCTGTTGTATGT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTAACGAATCAGTCAGGTTTCCTCTCTCTCCTCCTGTTGTATGT  1147

seq1  GTTCCTCTCTGGTATGAATTC  1157
      |||||||||||||||||||||
seq2  GTTCCTCTCTGGTATGAATTC  1168