BAC Information

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BAC

Clone NameB6Ng01-275E19
Chromosome1 (Build37)
Map Location 31,631,177 - 31,632,326
singlet/doubletsinglet
Overlap geneLOC624275
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262
Downstream geneLOC666056, LOC100041238, Khdrbs2, EG408191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275E19.bB6Ng01-275E19.g
ACCGA076377GA076378
length1,1451,192
definitionB6Ng01-275E19.b B6Ng01-275E19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccctgtaatggagcatataaagtttgcaataccaaggggcctct
cttcccagtgatggcagactaggccatcttctgctacatatgcagctaga
gatacgagctctggggatactggtgagttcagattgtttttccacctcta
gggttgcagaccccttcagctccttgggtgatttctctagcttctccatt
ggggccctgtgttccatcttatagatgactgtgagcatcctcttctgtgt
ttgccaggcactggtatagcctcatacaacatagctataacagggtccct
tcagcaaaatctttctagcatatgcaatagtgtctgggtttggcggctga
ttatggcttagattctgtttcttacttccttgaaaatctttagtctggga
gttaatggaagtttctaccagatttgggtgggaattttaaatccataccc
ggggagaataaaactaagatttaatctaatatttaaggttaatttcagtc
agatttattaccaggacaaaaaaaatgatgcagaatatcgacacaggagt
aggatttccagctacaaacctggcattttatagtagtaaacctcctgaaa
gatgtgctgatgcaaccatggcacaaacagtgtggtggtaaccccacagc
ctcaattgtatctaaagctaaattcaggaagtggaaccaaatcatggaca
aagatctagtcttcagtgccaaagatccccagacaggcatgaaactacag
gaaaatcaatacttttcttctgctaaaggagcatgctaaaaacatgactt
ataataactttcttctgtacacacatatcagtgtgttactcatccataat
cagaggtgtttcctctttcagtaagtgagacatgatacaaagacctacaa
atggacaatgtgcagagaatgagatactgtacactctatgctaatgggat
atttttatctgactccttccttcactgttaaggatgctatgtagaagaga
agacacagattataagaccagcctgatgaatgacaccagaaacagtctcc
aggtcttttatatggaagtccacagagaactggtgcaagggatgcacaat
gcttctttttatttactatctatagccctgttgactacaatatat
gaattcactcctagtcactcccattctcggggtgtaatagtggggtgatg
ggcaagcaacgaatcgggagctgtcacgccatatcaggtgctgaaacgtc
acgctgcgggttataaaagcagcgccattttcccggttcgggatcttcct
gagaagcaagcaataaagcttttgccgcggaagattctggtttgttgcgt
ctttcttgccggtcgagcggggcgccgaagaacccgggaactgtcatcac
accggcgcaaggaagatccctcgttcgcggggcagaatcagaaccgtggg
acaaaaggctctacaaggtacgtacaatcttgaaatttcttcagagttag
aagcccttttgattgtttgcacggcgattatgaggattgtcagcaaatgg
tagaatcggggcagaaagttctggacaaaattcaagaaagtctatcagag
gttgagcggggagagaaagtaaaagtagagaggaaacaaagtgcactgaa
gaatttaggcctttccacgggccttgagcccgaggaaaagagatataaag
gaaagaatgccttgggagagataagaaaaagggataaaaagggagagaag
aagggagatcaagctggagaggcacataaggaaaggagcctctacccgcc
actgggtgaatttaagcagctagctcttagtagctcagaaccagatgaag
gaattagcgcctctgaagaaacagactcggaggaggaagcagttcgttat
aagggagaaaggtaccagcaagataaaaggcgatctactcagtccagaaa
aaggcaaaaagcagctggcgaaagccagcttgctgctcggcctccggact
gtcggcttcagggtcctagtgcacctctgctttatgtgcagaggtagtgg
tcaatttttacctactcctcatgtagggtaaaccctcgtggtgtcaggcc
attacaggtctggcaatggatgtcactcatatttcctcctttagagaaat
catatttacatgttctattgaccacctgctctggtgtaatgtttgccacc
acctttaacaaggtgaaaaagccttctcatgttatatagcactgcctaga
agtgtgggagtgtccttgggggcagccacatccgtgaacgatatggccag
acatatacctcctcacataaatattcaagacacacagatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_31631177_31632326
seq2: B6Ng01-275E19.b_40_1184

seq1  GAATTCCCCTGTAATGGAGCATATAAAGTTTGCAATACCAAGGGGCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTGTAATGGAGCATATAAAGTTTGCAATACCAAGGGGCCTCT  50

seq1  CTTCCCAGTGATGGCAGACTAGGCCATCTTCTGCTACATATGCAGCTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAGTGATGGCAGACTAGGCCATCTTCTGCTACATATGCAGCTAGA  100

seq1  GATACGAGCTCTGGGGATACTGGTGAGTTCAGATTGTTTTTCCACCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACGAGCTCTGGGGATACTGGTGAGTTCAGATTGTTTTTCCACCTCTA  150

seq1  GGGTTGCAGACCCCTTCAGCTCCTTGGGTGATTTCTCTAGCTTCTCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCAGACCCCTTCAGCTCCTTGGGTGATTTCTCTAGCTTCTCCATT  200

seq1  GGGGCCCTGTGTTCCATCTTATAGATGACTGTGAGCATCCTCTTCTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCCTGTGTTCCATCTTATAGATGACTGTGAGCATCCTCTTCTGTGT  250

seq1  TTGCCAGGCACTGGTATAGCCTCATACAACATAGCTATAACAGGGTCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGGCACTGGTATAGCCTCATACAACATAGCTATAACAGGGTCCCT  300

seq1  TCAGCAAAATCTTTCTAGCATATGCAATAGTGTCTGGGTTTGGCGGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAAATCTTTCTAGCATATGCAATAGTGTCTGGGTTTGGCGGCTGA  350

seq1  TTATGGCTTAGATTCTGTTTCTTACTTCCTTGAAAATCTTTAGTCTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCTTAGATTCTGTTTCTTACTTCCTTGAAAATCTTTAGTCTGGGA  400

seq1  GTTAATGGAAGTTTCTACCAGATTTGGGTGGGAATTTTAAATCCATACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGGAAGTTTCTACCAGATTTGGGTGGGAATTTTAAATCCATACCC  450

seq1  GGGGAGAATAAAACTAAGATTTAATCTAATATTTAAGGTTAATTTCAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAATAAAACTAAGATTTAATCTAATATTTAAGGTTAATTTCAGTC  500

seq1  AGATTTATTACCAGGACAAAAAAAATGATGCAGAATATCGACACAGGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATTACCAGGACAAAAAAAATGATGCAGAATATCGACACAGGAGT  550

seq1  AGGATTTCCAGCTACAAACCTGGCATTTTATAGTAGTAAACCTCCTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTCCAGCTACAAACCTGGCATTTTATAGTAGTAAACCTCCTGAAA  600

seq1  GATGTGCTGATGCAACCATGGCACAAACAGTGTGGTGGTAACCCCACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGCTGATGCAACCATGGCACAAACAGTGTGGTGGTAACCCCACAGC  650

seq1  CTCAATTGTATCTAAAGCTAAATTCAGGAAGTGGAACCAAATCATGGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTGTATCTAAAGCTAAATTCAGGAAGTGGAACCAAATCATGGACA  700

seq1  AAGATCTAGTCTTCAGTGCCAAAGATCCCCAGACAGGCATGAAACTACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTAGTCTTCAGTGCCAAAGATCCCCAGACAGGCATGAAACTACAG  750

seq1  GAAAATCAATACTTTTCTTCTGCTAAAGGAGCATGCTAAAAACATGACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCAATACTTTTCTTCTGCTAAAGGAGCATGCTAAAAACATGACTT  800

seq1  ATAATAACTTTCTTCTGTACACACATATCAGTGTGTTACTCATCCATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAACTTTCTTCTGTACACACATATCAGTGTGTTACTCATCCATAAT  850

seq1  CAGAGGTGTTTCCTCTTTCAGTAAGTGAGACATGATACAAAGACCTACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTGTTTCCTCTTTCAGTAAGTGAGACATGATACAAAGACCTACAA  900

seq1  ATGGACAATGTGCAGAGAATGAGATACTGTACACTCTATGCTAATGGGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAATGTGCAGAGAATGAGATACTGTACACTCTATGCTAATGGGAT  950

seq1  ATTTTTATCTGACTCCTTCCTTCACTGTTAAGGATGCTATGTAGAAGAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATCTGACTCCTTCCTTCACTGTTAAGGATGCTATGTAGAAGAGA  1000

seq1  AGACAACAAGATTATAAGACCCAGCTGATGAATGACACCAAGAAAACAGT  1050
      |||||   |||||||||||||   ||||||||||||||||   |||||||
seq2  AGACA--CAGATTATAAGACCAGCCTGATGAATGACACCA--GAAACAGT  1046

seq1  CTTCCAGGTC-TTTATAT-GAAGT-CACAGAG-ACT-GTGC-AGGGATGC  1094
      | |||||||| ||||||| ||||| ||||||| ||| |||| ||||||||
seq2  C-TCCAGGTCTTTTATATGGAAGTCCACAGAGAACTGGTGCAAGGGATGC  1095

seq1  ACAATGCTTTCTTTTTTATTTACTATCTAATTAG-CCTGTTGACTACAAA  1143
      |||||||||   |||||||||||||||||  ||| |||||||||||||| 
seq2  ACAATGCTT--CTTTTTATTTACTATCTA--TAGCCCTGTTGACTACAA-  1140

seq1  ATTATAT  1150
        |||||
seq2  --TATAT  1145