BAC Information

Click to search

BAC

Clone NameB6Ng01-275F17
Chromosome1 (Build37)
Map Location 76,530,742 - 76,531,627
singlet/doubletsinglet
Overlap genenone
Upstream geneStk11ip, Slc4a3, LOC100039069, LOC383531
Downstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275F17.bB6Ng01-275F17.g
ACCGA076421GA076422
length493896
definitionB6Ng01-275F17.b B6Ng01-275F17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
cactattttccaaataaatgctgactttgactctatcataaggtaggggt
ttgagtataggataattgataggaattatgccacacaaatgatgttccta
aagcacagaagacaaatcacccatggaaggagttacagagacaaaatttg
gagctgtgacgaaaggatggaccatctagtgattgccatatgcagggatc
catcccataatcagcttccaaatgctgacaccattgcatacactagcaag
attttgctgaaaggacccagatatagctccctcttgtgagactatgccgg
ggcctagcaaacacagaagtggatgatcacagtcagctattggatgggtc
acacggcccccaatggaggagctagagaatgtacccaaggagctaaaggg
atctggaaccctataggtggaataacaatatgaactaaccaataccccgg
agctcttgactctagctgcatatgtatcaaaagatggcctagt

gaattccatggtttcgtgcctcgactgtacatctgtctaggcttgtgttt
gcttaagtctggttggttttctgatcttgagaaaggaatgttccagttat
ctctaaggttgactccacagtgcctggatttcttttcttgttaggatgct
atgtgatttctccctttgatgttttggcaaatgaaggtggattgaagaga
aaggatggtgggttcagtcagatagagtttttggtcttcacatgctgtca
aggagatgcatgggtgctatgacccagaacccactgcatagccagtgacc
tcgagactgccctactgctgaatccacatgctagagatttctttctaaga
caatagacattttagttaaatcaggaactgatgatgttagcattctgtgc
tggctagattatgtcaacttgatacaaactataatcatctgaacgaagga
aaacctgattgagaaaatgtctccataagatcgggctgtgggtgttttct
taagtagtgattgatggggggagtgcccagtccattgtgagccgatggtc
ctgggttctataagaaagcaggctaagcaagccatgatgaggctagaagg
gaatgggaaagagtggggtctgagcagcccaaggtatataaaactgtgag
accgtgtgcaaattgaagagaggggcttttaatttgaaaatgtttctaaa
tcattttcaagaccataagagcagagcatttgattcaggaaagcccctgg
gactgtctaagcccacaatttccatggagtcagcctctggctttggaaca
cttacaaaacaaagcgctaaccaaattggaattcaaatcctgtttctgcc
cttttaccagcatgtaatttttgggaagactttctcacaatacttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_76530742_76531627
seq2: B6Ng01-275F17.g_68_963

seq1  GAATTCCATGGTTTCGTGCCTCGACTGTACATCTGTCTAGGCTTGTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGTTTCGTGCCTCGACTGTACATCTGTCTAGGCTTGTGTTT  50

seq1  GCTTAAGTCTGGTTGGTTTTCTGATCTTGAGAAAGGAATGTTCCAGTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGTCTGGTTGGTTTTCTGATCTTGAGAAAGGAATGTTCCAGTTAT  100

seq1  CTCTAAGGTTGACTCCACAGTGCCTGGATTTCTTTTCTTGTTAGGATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGGTTGACTCCACAGTGCCTGGATTTCTTTTCTTGTTAGGATGCT  150

seq1  ATGTGATTTCTCCCTTTGATGTTTTGGCAAATGAAGGTGGATTGAAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATTTCTCCCTTTGATGTTTTGGCAAATGAAGGTGGATTGAAGAGA  200

seq1  AAGGATGGTGGGTTCAGTCAGATAGAGTTTTTGGTCTTCACATGCTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGGTGGGTTCAGTCAGATAGAGTTTTTGGTCTTCACATGCTGTCA  250

seq1  AGGAGATGCATGGGTGCTATGACCCAGAACCCACTGCATAGCCAGTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGCATGGGTGCTATGACCCAGAACCCACTGCATAGCCAGTGACC  300

seq1  TCGAGACTGCCCTACTGCTGAATCCACATGCTAGAGATTTCTTTCTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGACTGCCCTACTGCTGAATCCACATGCTAGAGATTTCTTTCTAAGA  350

seq1  CAATAGACATTTTAGTTAAATCAGGAACTGATGATGTTAGCATTCTGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGACATTTTAGTTAAATCAGGAACTGATGATGTTAGCATTCTGTGC  400

seq1  TGGCTAGATTATGTCAACTTGATACAAACTATAATCATCTGAACGAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGATTATGTCAACTTGATACAAACTATAATCATCTGAACGAAGGA  450

seq1  AAACCTGATTGAGAAAATGTCTCCATAAGATCGGGCTGTGGGTGTTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGATTGAGAAAATGTCTCCATAAGATCGGGCTGTGGGTGTTTTCT  500

seq1  TAAGTAGTGATTGATGGGGGGGAGTGCCCAGTCCATTGTGAGCCGATGGT  550
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAAGTAGTGATTGAT-GGGGGGAGTGCCCAGTCCATTGTGAGCCGATGGT  549

seq1  CCTGGGTTCTATAAGAAAGCAGGCTAAGCAAGCCATGATGAGGCTAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTTCTATAAGAAAGCAGGCTAAGCAAGCCATGATGAGGCTAGAAG  599

seq1  GGAATGGGAAAGAGTGGGGTCTGAGCAGCCCAAGGTATAT-AAACTGTGA  649
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGAATGGGAAAGAGTGGGGTCTGAGCAGCCCAAGGTATATAAAACTGTGA  649

seq1  GACCGTGTGCAAATTGAAGAGAGGGGCTTTTAA-TTGAAAATGTTTCTAA  698
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GACCGTGTGCAAATTGAAGAGAGGGGCTTTTAATTTGAAAATGTTTCTAA  699

seq1  ATCA-TTTCAAGACCATAAGAGCAGAGCA-TTGATTCAGGAAAGCCCCTG  746
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATCATTTTCAAGACCATAAGAGCAGAGCATTTGATTCAGGAAAGCCCCTG  749

seq1  GGACTGTCTAAG-CCACAA-TTCCATGGAGTCAGCC-CTGGCCTTGGAAC  793
      |||||||||||| |||||| |||||||||||||||| ||||| |||||||
seq2  GGACTGTCTAAGCCCACAATTTCCATGGAGTCAGCCTCTGGCTTTGGAAC  799

seq1  ACTAACAAAACAAAGCGCTAACCAAATTGGAA-TCAAATCCTGTTTCTG-  841
      ||| |||||||||||||||||||||||||||| |||||||||||||||| 
seq2  ACTTACAAAACAAAGCGCTAACCAAATTGGAATTCAAATCCTGTTTCTGC  849

seq1  CCTTTTACCAAGCATGTAATTTT--GGGAGACTTTCTCAC-ATACTTG  886
      ||||||||| |||||||||||||  || |||||||||||| |||||||
seq2  CCTTTTACC-AGCATGTAATTTTTGGGAAGACTTTCTCACAATACTTG  896


| Home | SequenceCutter | Blast | Download |