BAC Information

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BAC

Clone NameB6Ng01-275I19
Chromosome1 (Build37)
Map Location 102,569,352 - 102,721,785
singlet/doubletdoublet
Overlap genenone
Upstream geneC230078M14Rik, LOC633295, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275I19.bB6Ng01-275I19.g
ACCGA076559GA076560
length9991,140
definitionB6Ng01-275I19.b B6Ng01-275I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,721,251 - 102,721,785)(102,569,352 - 102,570,511)
sequence
gaattctttacttgtccattgtcccaggctaatcttagattatacacatc
agtaactaatgttatctcacatgtacatatctgtaaggaagactcaacag
tttaattacagattttttttaattggaattttttctttatttacatttca
aacatttctccctttccaggtctccccttcagaaacccctatcccatgcc
tcctactcctatctctatgagagtgctcctcgacccactcacccactcca
gtcttcctgccatggcattcccctacattggggcatcaaacaccctcagg
ttcaagggcctctcctcccattgatgtccaacaaggccactgtctgtcac
atatgaggccagagccatgggtctctccatgtatatcctttggttggtgg
tccagtcccgggagctccagtgaggcctggcttgttgacacttttgctct
acccacaggactgctaaacccctttagctccttcattcccttttctaact
cttccactagggacacctgtactcaatccaatcgctggctgtgagcatcc
ccctctgtatttgttaggctctgacacagccttgcaggagaagctgtatc
aggcttctatccacaagcacttcctggcatccacaatagggtcagggttt
ggtggttttgagacataattaaagttcttgtcatgtaggtctttcacttt
tttggttaaaatttcacaaagatattttatcgttttgtggctattggaaa
ggcaaaatattaaaaatattgtttccctaatttctttttcagcctgttta
tagtttgtatgaggaatggctactcgttttttgtttgtttgctatttttt
tccttcatagttgattttgtatccaactatgaaactgaagttgtttatca
gcagagcaattctccaatagaattttgggggttatatagacttatgtaaa
ctagcatatcatctgtgatagtgatactttcgacttctttcttttgagt

gaattcccttatgttcattttttataaactaagttaatgtgtgctatgaa
cttaagttatgtacccttacatgcccctaacctacaagtaacacaagtat
ttttgtgggtgttatgagagtgatctgttggaaagcaacattataaaatt
aatatccatcataaatgctggatgtaaactgaaatatatagcttcatagc
atcggcttgtttgttttctgagtcattctgagtcagtgatttaatcctgt
tcattcaaatttgttaaagtttctgtaaccttctccatgtgatgcttccc
catgtgatgctttctttgctgttcaagaaaagagagagcaaagcctttca
ttagcaacacgtacagatatacatacacagagaaaggcataggcagatat
acaagacaaattttaggtaggcagattcagaatgttgtttctatcattac
tagtattattattgtgtctctctgtgtaggccataccccaccagaacaga
gctctttaaagtcttagatccgagaaacagatttcatcactgagccattc
cctcaataacagcttcttccctgcaagttgtggggccactggggattgct
tcattctgcaactaccttttatccattttgtagttctccaggactctcct
atgatggataggaaatagctccttccaagttccctctgatcccacctaca
gaattagtattttggttttgttttgttttgttttgaaagaaagaaaacta
aattcaagactacaaagccctagacagagggtttattcaagatcctagac
acaaagaaaagagacacaaaggctgtaaagtcatcccaggaaccaattag
ccattgagataagaaaggcacaaaaggacaatctctggacagctcagatg
agtatgggccacctactaatatgggtttcagcttagccagatgtcctgtc
aaccaagataaacacctcctttagagttactgacacatagtgctcctgat
gtttaaactgcccacttgtgtgtaactgtgccattcccctatcccccact
ccttctataataaccttaccttttggcctcgtgtcgaacccctgtctctt
gtgtgaaatctgtcagtcgaccctgtcattactacctcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_102721251_102721785
seq2: B6Ng01-275I19.b_46_580 (reverse)

seq1  GCGATTGGATTGAGTACAGGTGTCCCTAGTGGAAGAGTTAGAAAAGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATTGGATTGAGTACAGGTGTCCCTAGTGGAAGAGTTAGAAAAGGGAA  50

seq1  TGAAGGAGCTAAAGGGGTTTAGCAGTCCTGTGGGTAGAGCAAAAGTGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAGCTAAAGGGGTTTAGCAGTCCTGTGGGTAGAGCAAAAGTGTCA  100

seq1  ACAAGCCAGGCCTCACTGGAGCTCCCGGGACTGGACCACCAACCAAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCAGGCCTCACTGGAGCTCCCGGGACTGGACCACCAACCAAAGGA  150

seq1  TATACATGGAGAGACCCATGGCTCTGGCCTCATATGTGACAGACAGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATGGAGAGACCCATGGCTCTGGCCTCATATGTGACAGACAGTGGC  200

seq1  CTTGTTGGACATCAATGGGAGGAGAGGCCCTTGAACCTGAGGGTGTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGGACATCAATGGGAGGAGAGGCCCTTGAACCTGAGGGTGTTTGA  250

seq1  TGCCCCAATGTAGGGGAATGCCATGGCAGGAAGACTGGAGTGGGTGAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAATGTAGGGGAATGCCATGGCAGGAAGACTGGAGTGGGTGAGTG  300

seq1  GGTCGAGGAGCACTCTCATAGAGATAGGAGTAGGAGGCATGGGATAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGAGGAGCACTCTCATAGAGATAGGAGTAGGAGGCATGGGATAGGGG  350

seq1  TTTCTGAAGGGGAGACCTGGAAAGGGAGAAATGTTTGAAATGTAAATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAGGGGAGACCTGGAAAGGGAGAAATGTTTGAAATGTAAATAAA  400

seq1  GAAAAAATTCCAATTAAAAAAAATCTGTAATTAAACTGTTGAGTCTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATTCCAATTAAAAAAAATCTGTAATTAAACTGTTGAGTCTTCCT  450

seq1  TACAGATATGTACATGTGAGATAACATTAGTTACTGATGTGTATAATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATATGTACATGTGAGATAACATTAGTTACTGATGTGTATAATCTA  500

seq1  AGATTAGCCTGGGACAATGGACAAGTAAAGAATTC  535
      |||||||||||||||||||||||||||||||||||
seq2  AGATTAGCCTGGGACAATGGACAAGTAAAGAATTC  535


seq1: chr1_102569352_102570511
seq2: B6Ng01-275I19.g_63_1202

seq1  GAATTCCCTTATGTTCATTTTTTATAAACTAAGTTAATGTGTGCTATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTATGTTCATTTTTTATAAACTAAGTTAATGTGTGCTATGAA  50

seq1  CTTAAGTTATGTACCCTTACATGCCCCTAACCTACAAGTAACACAAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTTATGTACCCTTACATGCCCCTAACCTACAAGTAACACAAGTAT  100

seq1  TTTTGTGGGTGTTATGAGAGTGATCTGTTGGAAAGCAACATTATAAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGGTGTTATGAGAGTGATCTGTTGGAAAGCAACATTATAAAATT  150

seq1  AATATCCATCATAAATGCTGGATGTAAACTGAAATATATAGCTTCATAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCATCATAAATGCTGGATGTAAACTGAAATATATAGCTTCATAGC  200

seq1  ATCGGCTTGTTTGTTTTCTGAGTCATTCTGAGTCAGTGATTTAATCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGCTTGTTTGTTTTCTGAGTCATTCTGAGTCAGTGATTTAATCCTGT  250

seq1  TCATTCAAATTTGTTAAAGTTTCTGTAACCTTCTCCATGTGATGCTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAAATTTGTTAAAGTTTCTGTAACCTTCTCCATGTGATGCTTCCC  300

seq1  CATGTGATGCTTTCTTTGCTGTTCAAGAAAAGAGAGAGCAAAGCCTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGATGCTTTCTTTGCTGTTCAAGAAAAGAGAGAGCAAAGCCTTTCA  350

seq1  TTAGCAACACGTACAGATATACATACACAGAGAAAGGCATAGGCAGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAACACGTACAGATATACATACACAGAGAAAGGCATAGGCAGATAT  400

seq1  ACAAGACAAATTTTAGGTAGGCAGATTCAGAATGTTGTTTCTATCATTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACAAATTTTAGGTAGGCAGATTCAGAATGTTGTTTCTATCATTAC  450

seq1  TAGTATTATTATTGTGTCTCTCTGTGTAGGCCATACCCCACCAGAACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTATTATTGTGTCTCTCTGTGTAGGCCATACCCCACCAGAACAGA  500

seq1  GCTCTTTAAAGTCTTAGATCCGAGAAACAGATTTCATCACTGAGCCATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTAAAGTCTTAGATCCGAGAAACAGATTTCATCACTGAGCCATTC  550

seq1  CCTCAATAACAGCTTCTTCCCTGCAAGTTGTGGGGCCACTGGGGATTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATAACAGCTTCTTCCCTGCAAGTTGTGGGGCCACTGGGGATTGCT  600

seq1  TCATTCTGCAACTACCTTTTATCCATTTTGTAGTTCTCCAGGACTCTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTGCAACTACCTTTTATCCATTTTGTAGTTCTCCAGGACTCTCCT  650

seq1  ATGATGGATAGGAAATAGCTCCTTCCAAGTTCCCTCTGATCCCACCTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGATAGGAAATAGCTCCTTCCAAGTTCCCTCTGATCCCACCTACA  700

seq1  GAATTAGTATTTTGGTTTTGTTTTGTTTTGTTTTGAAAGAAAGAAAACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGTATTTTGGTTTTGTTTTGTTTTGTTTTGAAAGAAAGAAAACTA  750

seq1  AATTCAAGACTACAAAGCCCTAGACAGAGGGTTTATTCAAGATCCTAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAGACTACAAAGCCCTAGACAGAGGGTTTATTCAAGATCCTAGAC  800

seq1  ACAAAGAAAAGAGACACAAAGGCTGTAAAGTCATCCCAGGAACCAATTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAAAGAGACACAAAGGCTGTAAAGTCATCCCAGGAACCAATTAG  850

seq1  CCATTGAGATAAGAAAGGCACAAAAGGACAATCTCTGGACAAGCTCAGAT  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCATTGAGATAAGAAAGGCACAAAAGGACAATCTCTGGAC-AGCTCAGAT  899

seq1  GAGTAATGGGCCACCTACTAATAT-GGTTTCAGCTTAGCCAGATGTCCTG  949
      |||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAGT-ATGGGCCACCTACTAATATGGGTTTCAGCTTAGCCAGATGTCCTG  948

seq1  TCAACCAAGATAAACACCCTCCCTTTAGAGTTACTGACACATAGTGCTCC  999
      ||||||||||||||||||   ||||||||||||||||||||||||||| |
seq2  TCAACCAAGATAAACACC--TCCTTTAGAGTTACTGACACATAGTGCT-C  995

seq1  CTGATGTTTAAACTGCCCACTTGTGTGTAACTGTGCCAATTTCCCCTATC  1049
      ||||||||||||||||||||||||||||||||||||||  ||||||||| 
seq2  CTGATGTTTAAACTGCCCACTTGTGTGTAACTGTGCCA--TTCCCCTAT-  1042

seq1  CCCCCACTCCTTTCCTATATAAACCCCTAACTTTTGGGCCTCGTGGTCGA  1099
      ||||||||||||  |||||  ||  ||| || ||| |||||||| |||||
seq2  CCCCCACTCCTT--CTATAATAA--CCTTACCTTTTGGCCTCGT-GTCGA  1087

seq1  CACCCCTGTCTCCTGTGTGAGATACTTGTCAGTCCGGAGCTCTGTCATTA  1149
       ||||||||||| ||||||| ||   ||||||||  || | |||||||| 
seq2  -ACCCCTGTCTCTTGTGTGAAAT--CTGTCAGTC--GA-CCCTGTCATT-  1130

seq1  AACTACCTCAT  1160
       ||||||||||
seq2  -ACTACCTCAT  1140


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