BAC Information

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BAC

Clone NameB6Ng01-276C09
Chromosome1 (Build37)
Map Location 114,356,731 - 114,528,979
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
Downstream geneLOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276C09.bB6Ng01-276C09.g
ACCGA077000GA077001
length6641,082
definitionB6Ng01-276C09.b B6Ng01-276C09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,528,322 - 114,528,979)(114,356,731 - 114,357,805)
sequence
gaattcactctgtagaccaggctggcctcgaactcagaaatctgcctgcc
tctgcctcccaaggtgctgggattaaaggcgagcaccaccatgcctgttt
tgttttgttttgttttgtttgagacagagtttctctttgtagccctggct
gtcctagaattcactctgtagaccaggctggcctcgaactcagaaatctg
cctgcccctgcctcccaaggtgctgggattaaaggcgagcaccaccatgc
ctggccttagaaaaaatgttttacgaagtgttaacagtatttactgaaga
agcaaggggcaggaattagtttgaccaccaaaaaccaaggttgtttcttc
tgattcctgttgctagcaaatcggcattaccattgggctaccatcagggc
cttgcaacagcttacaacattaccagctacaaccaatcacacactaggtg
ttctaggtgctgtgccccagacaccacagatctttctttgagtctttcat
ctcttgttttccattagttatctctgtttctttttatatctctctctctc
tctctctctctctctctctctctctctctctctctctctctcactcacac
acacacactctctcacaccccttcaatctctgtaaatctctatcctgtct
ctcttttctgtctg

gaattccactcaaattgtctgtctatgaatgtgcattttcatacataaag
tagatatttaaaccaactatcaatttatacctcaaaaataattatgtctg
tatcaacataaaatgaaatcaaattaccacagaagttaattgtttataaa
atccagtgtcttgtaccaattaaagagttgcttagttttttttttggggg
ggggtgcttttttctttcttttctcttttctttctttcttttttttttta
catgaggtgacacgagaatatttcagtgttaaattatcatacatatgact
cagaatataccttctgtaactgaatggctgaacatgtgcagagaaagaaa
gaaaatcatggataagttctatagtctattattaaatcaattcaggcaag
tgccactaggaggttgtttaatatagaaggacatcaaatgacacacattt
gacatacatacacctgccagtgctgaaagtttgtaaatttcaattttctt
taggtattttatattttgttcttgtgagtttgtctctctcagtctctgtc
tgtctctgtctctttctctttctccctgtctctctcttctctgtctgtct
gtctgtctctctctctcttacacacacacacacacacacacactgacact
tgtctgtgtaggctaaagatcaacctccatgagcgtcatctactttgaat
tttagacaggtttactcactggccggactctccaagtctaaaccctacaa
tttggccatgggtagaaactataatggttcacttccatagaagtttcttg
tgtgtttcagttatgggtctagaacacagatcttccaaatatacataact
agcagtttgccggttgccaacctttgccacatttgtgtagtgaatgaaca
atgttaaatagtaaacaaccacctattatagtgttgaacactggtctaac
ttaaaaatttaataaaccattactgaaaggtatgcattacaggataaaat
taaaggcattgaccaacttggaaaatattacttattagaaatgattacaa
tatacctccatggtggaagaaatggactgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_114528322_114528979
seq2: B6Ng01-276C09.b_45_708 (reverse)

seq1  CAGAC-----AGGGAGACAGGATAGAGACTGACAGAGATTG-AGGGGGAA  44
      |||||     || ||||||||||||||| | |||||||||| |||||   
seq2  CAGACAGAAAAGAGAGACAGGATAGAGATTTACAGAGATTGAAGGGGTGT  50

seq1  GAGAGAGAAGAGGAAGGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGA  94
      |||||||     |   | ||| || |||||||||||||||||||||||||
seq2  GAGAGAGTGTGTGTGTGTGAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGA  100

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGATATAAAAAGAAACAGAGATAACTA  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGATATAAAAAGAAACAGAGATAACTA  150

seq1  ATGGAAAACAAGAGATGAAAGACTCAAAGAAAGATCTGTGGTGTCTGGGG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAACAAGAGATGAAAGACTCAAAGAAAGATCTGTGGTGTCTGGGG  200

seq1  CACAGCACCTAGAACACCTAGTGTGTGATTGGTTGTAGCTGGTAATGTTG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCACCTAGAACACCTAGTGTGTGATTGGTTGTAGCTGGTAATGTTG  250

seq1  TAAGCTGTTGCAAGGCCCTGATGGTAGCCCAATGGTAATGCCGATTTGCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGTTGCAAGGCCCTGATGGTAGCCCAATGGTAATGCCGATTTGCT  300

seq1  AGCAACAGGAATCAGAAGAAACAACCTTGGTTTTTGGTGGTCAAACTAAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGGAATCAGAAGAAACAACCTTGGTTTTTGGTGGTCAAACTAAT  350

seq1  TCCTGCCCCTTGCTTCTTCAGTAAATACTGTTAACACTTCGTAAAACATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCCCTTGCTTCTTCAGTAAATACTGTTAACACTTCGTAAAACATT  400

seq1  TTTTCTAAGGCCAGGCATGGTGGTGCTCGCCTTTAATCCCAGCACCTTGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAGGCCAGGCATGGTGGTGCTCGCCTTTAATCCCAGCACCTTGG  450

seq1  GAGGCAGGGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGA  500

seq1  GTGAATTCTAGGACAGCCAGGGCTACAAAGAGAAACTCTGTCTCAAACAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTCTAGGACAGCCAGGGCTACAAAGAGAAACTCTGTCTCAAACAA  550

seq1  AACAAAACAAAACAAAACAGGCATGGTGGTGCTCGCCTTTAATCCCAGCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAACAAAACAGGCATGGTGGTGCTCGCCTTTAATCCCAGCA  600

seq1  CCTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTC  650

seq1  TACAGAGTGAATTC  658
      ||||||||||||||
seq2  TACAGAGTGAATTC  664


seq1: chr1_114356731_114357805
seq2: B6Ng01-276C09.g_67_1148

seq1  GAATTCCACTCAAATTGTCTGTCTATGAATGTGCATTTTCATACATAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCAAATTGTCTGTCTATGAATGTGCATTTTCATACATAAAG  50

seq1  TAGATATTTAAACCAACTATCAATTTATACCTCAAAAATAATTATGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATTTAAACCAACTATCAATTTATACCTCAAAAATAATTATGTCTG  100

seq1  TATCAACATAAAATGAAATCAAATTACCACAGAAGTTAATTGTTTATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACATAAAATGAAATCAAATTACCACAGAAGTTAATTGTTTATAAA  150

seq1  ATCCAGTGTCTTGTACCAATTAAAGAGTTGCTTAGTTTTTTTTTTGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTGTCTTGTACCAATTAAAGAGTTGCTTAGTTTTTTTTTTGGGGG  200

seq1  GGGGTGCTTTTTTCTTTCTTTTCTCTTTTCTTTCTTTCTTTTTTTTTTTT  250
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGGGTGCTTTTTTCTTTCTTTTCTCTTTTCTTTCTTTC-TTTTTTTTTTT  249

seq1  ACATGAGGTGACACGAGAATATTTCAGTGTTAAATTATCATACATATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGGTGACACGAGAATATTTCAGTGTTAAATTATCATACATATGAC  299

seq1  TCAGAATATACCTTCTGTAACTGAATGGCTGAACATGTGCAGAGAAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATATACCTTCTGTAACTGAATGGCTGAACATGTGCAGAGAAAGAA  349

seq1  AGAAAATCATGGATAAGTTCTATAGTCTATTATTAAATCAATTCAGGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCATGGATAAGTTCTATAGTCTATTATTAAATCAATTCAGGCAA  399

seq1  GTGCCACTAGGAGGTTGTTTAATATAGAAGGACATCAAATGACACACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACTAGGAGGTTGTTTAATATAGAAGGACATCAAATGACACACATT  449

seq1  TGACATACATACACCTGCCAGTGCTGAAAGTTTGTAAATTTCAATTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATACATACACCTGCCAGTGCTGAAAGTTTGTAAATTTCAATTTTCT  499

seq1  TTAGGTATTTTATATTTTGTTCTTGTGAGTTTGTCTCTCTCAGTCTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTATTTTATATTTTGTTCTTGTGAGTTTGTCTCTCTCAGTCTCTGT  549

seq1  CTGTCTCTGTCTCTTTCTCTTTCTCCCTGTCTCTCTCTTCTCTGTCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGTCTCTTTCTCTTTCTCCCTGTCTCTCTCTTCTCTGTCTGTC  599

seq1  TGTCTGTCTCTCTCTCTCTTACACACACACACACACACACACACTGACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCTCTCTCTCTCTTACACACACACACACACACACACACTGACAC  649

seq1  TTGTCTGTGTAGGCTAAAGATCAACCTCCATGAGCGTCATCTACTTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTGTAGGCTAAAGATCAACCTCCATGAGCGTCATCTACTTTGAA  699

seq1  TTTTAGACAGGTTTACTCACTGGCCGGACTCTCCAAGTCTAAACCCTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGACAGGTTTACTCACTGGCCGGACTCTCCAAGTCTAAACCCTACA  749

seq1  ATTTGGCCATGGGTAG-AACTATAATGGTTCACTTCCATAGAAGTTTCTT  799
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTTGGCCATGGGTAGAAACTATAATGGTTCACTTCCATAGAAGTTTCTT  799

seq1  GTGTGTTTCAGTTATGGGTCTAGAACACAGATCTTCC-AATATACATAAC  848
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTGTGTTTCAGTTATGGGTCTAGAACACAGATCTTCCAAATATACATAAC  849

seq1  TAGCAGTTTGCCGGTTGCCAACCTTTGCCACATTTGTGTAGTGAATGAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTTTGCCGGTTGCCAACCTTTGCCACATTTGTGTAGTGAATGAAC  899

seq1  AATGTTAAATAGTAAACAA-CACCTATTATAGTGTTGAACACTGGTCTAA  947
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AATGTTAAATAGTAAACAACCACCTATTATAGTGTTGAACACTGGTCTAA  949

seq1  CTTAAAAATTTAATAAA-CATTACTGAAGGTTATGCAATTACAGGATAAA  996
      ||||||||||||||||| |||||||||| | ||||| |||||||||||||
seq2  CTTAAAAATTTAATAAACCATTACTGAAAGGTATGC-ATTACAGGATAAA  998

seq1  A-TAAAGGCATTGAACAACTT-GAAAATATTACTTAATAGAAATGATTAC  1044
      | |||||||||||| |||||| |||||||||||||| |||||||||||||
seq2  ATTAAAGGCATTGACCAACTTGGAAAATATTACTTATTAGAAATGATTAC  1048

seq1  AATATAC--TCATGGTG--AGAAATGGAACTGATT  1075
      |||||||   |||||||  |||||||| |||||||
seq2  AATATACCTCCATGGTGGAAGAAATGG-ACTGATT  1082


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