BAC Information

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BAC

Clone NameB6Ng01-277A11
Chromosome1 (Build37)
Map Location 113,196,047 - 113,304,399
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041429, EG626652, Cdh19
Downstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277A11.bB6Ng01-277A11.g
ACCGA077656GA077657
length1,0881,115
definitionB6Ng01-277A11.b B6Ng01-277A11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,196,047 - 113,197,130)(113,303,311 - 113,304,399)
sequence
gaattccacttctctgaccttgtctagggagccttatcctccacatcctc
tacctggaaaaagatcagtagtccttgacagacctactggttacacttcc
ccttttctcattagaacttgtccagtaagtacctagctgtgagaagccaa
ctccaagatggcacaggtttccagttttcgttgtcataaacaacaccact
gcgcaggcgtcaattcgaatttggatccaacccctcctgagtgggtgcat
gcaaattgggtgccagcagactgaccaatcccagggggccacggagcctt
ctcctgtgctggggtgcatataagcagggctccctgggcacccggggtcc
cagtagaagcattgaggcattcctgcaataaaggctgttgagaaaaatct
gactgtgtcctgtcattcttgctggtcgagagcagatgtgacatatggtg
gcctgtacggggacccgaggatctcgtggattcagaactcttcagctggg
gaacggcagtaccggtaagtctcccaaattgatccccaggtttaaggggg
gatatgtttttctcgcctatagccccagtgtgggtagcacttatccttgt
tgttttgttttctgtaatttgtggcctctacttttgtttgacagaagcag
ttaagacaggtcagaaaattcttatggaacaacaagaaagcatgtcagaa
gaggacaaagagcatatgagtaagagaaagaaaaagggcaaaaaagaaaa
aggaaaagaaaagagagaaaaaatcaaagaaatcagtgataaaaaaagga
aatagtgaagatatatccctctttaatggatttaagtttatcaagctctg
cttccagtgactcggagcttagcaaagatgataaagctgacctagaggaa
gaggcagctcggtatgagagagaaagatatgacccgggattggtcatata
gagccaagccaatgaaaaggggagcatcggctaataaaagaacaaaccga
agttgccaacagcttccaccttacaccttgatttacacagggaaaaaagg
agtcttgctagggctattagaaccagttacctccttct

gaattcacattgattattttattgatagaggacttttctaagaaacatat
gaacagaatttctaatcatgataggaaagacaaaaaaataaataaataaa
cctttgaaaccaaaggtttcaaaatgaaccaaaccaaacaaaataaaaca
gacaaacaaaaacaaaacaaaatgtgaactgagacaaaagaaaacatttg
tctaaaattgatatcaatgaaccagtgagtttactgagatttcttacagt
gatttaatattagttatatcaccaagacatcccattggtcaattagttac
agtttcattagagaatatgtatcttagttaaatgcttttgtaaaatgccc
caacttcatcaatctctatggaacaagaggggtttcatgagtatccaatg
aatgcttctgtgccttgtaattcctatgaacccagtgatcctgttgagct
tttgtttttcccccaaatcaggtattcataaggtgtttcttaagaattct
cctaagagaggatataactaaccctgcagagatataatgacggataccca
agtggccctctctcagaatacagtgggattagaaactcaaggggggattg
tggaaggggatgcttgggaggtgggcagtgagcaagatataatgtgaatt
taaaaataaaatctcccaggagcgatcataagctgctttgataaatgatt
tcaacatcccagcaaagtatttatgcagttctaattaattcccaacagcc
caaaatctacacctcatggatggattaggttttctatgccctgaatactt
tacaatggctataaatttacaacacatgacacttttgagtaacaacactc
aaatcataatgcaaactttcatacacttgaaagcaaattggaaataatta
aattccaattttctccttacattctacataaacattacttatcacctata
tggattgcctctaacttcattaataccaagaaatttatctattagtacca
cctcttattgaatcacattttcccaatccctggtttataatcagttccac
caccaccagcagcacataattaccgatttttaatctttctaaggattttg
taacttatttttagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_113196047_113197130
seq2: B6Ng01-277A11.b_44_1131

seq1  GAATTCCACTTCTCTGACCTTGTCTAGGGAGCCTTATCCTCCACATCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTCTCTGACCTTGTCTAGGGAGCCTTATCCTCCACATCCTC  50

seq1  TACCTGGAAAAAGATCAGTAGTCCTTGACAGACCTACTGGTTACACTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGAAAAAGATCAGTAGTCCTTGACAGACCTACTGGTTACACTTCC  100

seq1  CCTTTTCTCATTAGAACTTGTCCAGTAAGTACCTAGCTGTGAGAAGCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTCATTAGAACTTGTCCAGTAAGTACCTAGCTGTGAGAAGCCAA  150

seq1  CTCCAAGATGGCACAGGTTTCCAGTTTTCGTTGTCATAAACAACACCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGATGGCACAGGTTTCCAGTTTTCGTTGTCATAAACAACACCACT  200

seq1  GCGCAGGCGTCAATTCGAATTTGGATCCAACCCCTCCTGAGTGGGTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAGGCGTCAATTCGAATTTGGATCCAACCCCTCCTGAGTGGGTGCAT  250

seq1  GCAAATTGGGTGCCAGCAGACTGACCAATCCCAGGGGGCCACGGAGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTGGGTGCCAGCAGACTGACCAATCCCAGGGGGCCACGGAGCCTT  300

seq1  CTCCTGTGCTGGGGTGCATATAAGCAGGGCTCCCTGGGCACCCGGGGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTGCTGGGGTGCATATAAGCAGGGCTCCCTGGGCACCCGGGGTCC  350

seq1  CAGTAGAAGCATTGAGGCATTCCTGCAATAAAGGCTGTTGAGAAAAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAAGCATTGAGGCATTCCTGCAATAAAGGCTGTTGAGAAAAATCT  400

seq1  GACTGTGTCCTGTCATTCTTGCTGGTCGAGAGCAGATGTGACATATGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGTCCTGTCATTCTTGCTGGTCGAGAGCAGATGTGACATATGGTG  450

seq1  GCCTGTACGGGGACCCGAGGATCTCGTGGATTCAGAACTCTTCAGCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTACGGGGACCCGAGGATCTCGTGGATTCAGAACTCTTCAGCTGGG  500

seq1  GAACGGCAGTACCGGTAAGTCTCCCAAATTGATCCCCAGGTTTAAGGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGGCAGTACCGGTAAGTCTCCCAAATTGATCCCCAGGTTTAAGGGGG  550

seq1  GATATGTTTTTCTCGCCTATAGCCCCAGTGTGGGTAGCACTTATCCTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTTTTTCTCGCCTATAGCCCCAGTGTGGGTAGCACTTATCCTTGT  600

seq1  TGTTTTGTTTTCTGTAATTTGTGGCCTCTACTTTTGTTTGACAGAAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTCTGTAATTTGTGGCCTCTACTTTTGTTTGACAGAAGCAG  650

seq1  TTAAGACAGGTCAGAAAATTCTTATGGAACAACAAGAAAGCATGTCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACAGGTCAGAAAATTCTTATGGAACAACAAGAAAGCATGTCAGAA  700

seq1  GAGGACAAAGAGCATATGAGTAAGAGAAAGAAAAAGGGCAAAAAAGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAAAGAGCATATGAGTAAGAGAAAGAAAAAGGGCAAAAAAGAAAA  750

seq1  AGGAAAAGAAAAGAGAGAAAAAATCAAAGAAATCAGTGATAAAAAAAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGAAAAGAGAGAAAAAATCAAAGAAATCAGTGATAAAAAAAGGA  800

seq1  AATAGTGAAGATATATCCCTCTTTAATGGATTTAAGTTTATCAAGCTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGAAGATATATCCCTCTTTAATGGATTTAAGTTTATCAAGCTCTG  850

seq1  CTTCCAGTGACTCGGAGCTTAGCAAAGATGATAAAGCTGACCTAGAGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGTGACTCGGAGCTTAGCAAAGATGATAAAGCTGACCTAGAGGAA  900

seq1  GAGGCAGCTCGGTATGAGAGAGAAAGATATGACCC-GGATTGGTCATATA  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAGGCAGCTCGGTATGAGAGAGAAAGATATGACCCGGGATTGGTCATATA  950

seq1  GAGCCAAGCCAATGAAAAGGGGAGCATCGGCTAATAAAAGAACAAAACCG  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAGCCAAGCCAATGAAAAGGGGAGCATCGGCTAATAAAAGAAC-AAACCG  999

seq1  AAAGTGCCAACAGC-TCCACCTTACAACCCTGA-TTACACA-GGAAAAAA  1046
      ||  |||||||||| |||||||||| ||| ||| ||||||| ||||||||
seq2  AAGTTGCCAACAGCTTCCACCTTAC-ACCTTGATTTACACAGGGAAAAAA  1048

seq1  GGAGTC-TGCTAGGGCTATTAG-ACCAGGTACCTCCTTCT  1084
      |||||| ||||||||||||||| ||||| |||||||||||
seq2  GGAGTCTTGCTAGGGCTATTAGAACCAGTTACCTCCTTCT  1088


seq1: chr1_113303311_113304399
seq2: B6Ng01-277A11.g_65_1179 (reverse)

seq1  ACTAAAAAT-AGTTACAAAATTCTAAG-AAGATTAAAA--TGGTAATTAT  46
      ||||||||| ||||||||||| || || ||||||||||   |||||||| 
seq2  ACTAAAAATAAGTTACAAAATCCTTAGAAAGATTAAAAATCGGTAATTA-  49

seq1  TGTGCTGCTGGTGGTGGTGGAACTGA-TATAA--CAAGGAT--GGAAAAT  91
      |||||||||||||||||||||||||| |||||  || ||||  |||||||
seq2  TGTGCTGCTGGTGGTGGTGGAACTGATTATAAACCAGGGATTGGGAAAAT  99

seq1  GTGA-TCAAT-AGAGGTGGTACTAATAGATAAA-TTCTT-GTA-TAATGA  136
      |||| ||||| |||||||||||||||||||||| ||||| ||| ||||||
seq2  GTGATTCAATAAGAGGTGGTACTAATAGATAAATTTCTTGGTATTAATGA  149

seq1  AGTTAGA-GCAAT-CATATA-GTGATAAGTAATG-TTATGTAGAATGTAA  182
      ||||||| ||||| |||||| ||||||||||||| |||||||||||||||
seq2  AGTTAGAGGCAATCCATATAGGTGATAAGTAATGTTTATGTAGAATGTAA  199

seq1  -GAGAAAATT-GAAATTAATTA-TTCCAATTTGC-TTCAAGTGTATGAAA  228
       ||||||||| ||| ||||||| ||||||||||| |||||||||||||||
seq2  GGAGAAAATTGGAATTTAATTATTTCCAATTTGCTTTCAAGTGTATGAAA  249

seq1  GTTTGCA-TATGATTTGAGTG-TGTTACTC-AAAGTGTCATGTGTTGTAA  275
      ||||||| ||||||||||||| |||||||| |||||||||||||||||||
seq2  GTTTGCATTATGATTTGAGTGTTGTTACTCAAAAGTGTCATGTGTTGTAA  299

seq1  A-TTATAGCCATTGTAAAGTATTCAGGGCATAG-AAACCTAATCCATCCA  323
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATTTATAGCCATTGTAAAGTATTCAGGGCATAGAAAACCTAATCCATCCA  349

seq1  TGAGGTGTAGATTTTGGGCTGTTGGGAATTAATTAGAACTGCATAAATAC  373
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGTAGATTTTGGGCTGTTGGGAATTAATTAGAACTGCATAAATAC  399

seq1  TTTGCTGGGATGTTGAAATCATTTATCAAAGCAGCTTATGATCGCTCCTG  423
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGGGATGTTGAAATCATTTATCAAAGCAGCTTATGATCGCTCCTG  449

seq1  GGAGATTTTATTTTTAAATTCACATTATATCTTGCTCACTGCCCACCTCC  473
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTTTATTTTTAAATTCACATTATATCTTGCTCACTGCCCACCTCC  499

seq1  CAAGCATCCCCTTCCACAATCCCCCCTTGAGTTTCTAATCCCACTGTATT  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATCCCCTTCCACAATCCCCCCTTGAGTTTCTAATCCCACTGTATT  549

seq1  CTGAGAGAGGGCCACTTGGGTATCCGTCATTATATCTCTGCAGGGTTAGT  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGAGGGCCACTTGGGTATCCGTCATTATATCTCTGCAGGGTTAGT  599

seq1  TATATCCTCTCTTAGGAGAATTCTTAAGAAACACCTTATGAATACCTGAT  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCTCTCTTAGGAGAATTCTTAAGAAACACCTTATGAATACCTGAT  649

seq1  TTGGGGGAAAAACAAAAGCTCAACAGGATCACTGGGTTCATAGGAATTAC  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGAAAAACAAAAGCTCAACAGGATCACTGGGTTCATAGGAATTAC  699

seq1  AAGGCACAGAAGCATTCATTGGATACTCATGAAACCCCTCTTGTTCCATA  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACAGAAGCATTCATTGGATACTCATGAAACCCCTCTTGTTCCATA  749

seq1  GAGATTGATGAAGTTGGGGCATTTTACAAAAGCATTTAACTAAGATACAT  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGATGAAGTTGGGGCATTTTACAAAAGCATTTAACTAAGATACAT  799

seq1  ATTCTCTAATGAAACTGTAACTAATTGACCAATGGGATGTCTTGGTGATA  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTAATGAAACTGTAACTAATTGACCAATGGGATGTCTTGGTGATA  849

seq1  TAACTAATATTAAATCACTGTAAGAAATCTCAGTAAACTCACTGGTTCAT  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAATATTAAATCACTGTAAGAAATCTCAGTAAACTCACTGGTTCAT  899

seq1  TGATATCAATTTTAGACAAATGTTTTCTTTTGTCTCAGTTCACATTTTGT  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCAATTTTAGACAAATGTTTTCTTTTGTCTCAGTTCACATTTTGT  949

seq1  TTTGTTTTTGTTTGTCTGTTTTATTTTGTTTGGTTTGGTTCATTTTGAAA  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGTTTGTCTGTTTTATTTTGTTTGGTTTGGTTCATTTTGAAA  999

seq1  CCTTTGGTTTCAAAGGTTTATTTATTTATTTTTTTGTCTTTCCTATCATG  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGTTTCAAAGGTTTATTTATTTATTTTTTTGTCTTTCCTATCATG  1049

seq1  ATTAGAAATTCTGTTCATATGTTTCTTAGAAAAGTCCTCTATCAATAAAA  1073
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAATTCTGTTCATATGTTTCTTAGAAAAGTCCTCTATCAATAAAA  1099

seq1  TAATCAATGTGAATTC  1089
      ||||||||||||||||
seq2  TAATCAATGTGAATTC  1115


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