BAC Information

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BAC

Clone NameB6Ng01-277B20
Chromosome1 (Build37)
Map Location 4,790,376 - 4,791,453
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC619785, Rp1h, Sox17, LOC664830, LOC664838, LOC664853, LOC619596, EG619980, LOC100039121, LOC620009, Mrpl15
Downstream geneLypla1, Tcea1, LOC619829, Rgs20, Atp6v1h, EG636659, Oprk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277B20.bB6Ng01-277B20.g
ACCGA077720GA077721
length3591,101
definitionB6Ng01-277B20.b B6Ng01-277B20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
agaacagcctgagctctgttactctatcttaaaaaacaaaaataaaatat
aagagatgtttttccttctatagtactttatttttatcatgttgattata
ttctcagtgtgtgatttaatagtggctattttcaaaatcttgaaactata
atagctattgttgtgtttaataaaaaagacaaaaaagccagggataagtt
tggtaggcacgtggtatggtatgggtgaagggggtgcctttgcatgctga
ggcaacccttccctgagaggtaccagcctcaggagggagggagggagaga
gagaagagagggcagtcatgagcatgtgttaagagatgggggaggatcct
cttcgagtt
gaattcagcatagcgacacactattggcttattcaaacattaacagaaag
aacacagtgcatcaggactttgttcctgtaggctgggggcttatctttgt
tcacatagcaatcagttgatgtatgacttttacccggcgccaaggggcaa
tagacagaggggaggttccggccagatggtgttgacttagataatgtagc
cctgctatgtcttcacagtcccctttatcttatggtcaagatgttcccag
gaatgttttaactatgaggcatacccaggtttgtttttctcttttctcag
ccccaggcagcctctaggctcacaaacaaccagcaatttctgagtacttt
atatgacttacaggtcttgaaatttcatctttctttcagatgttaaaaag
ctgggcatggtagcacatgcctttaattccagtactggagagtcagaggc
aggtggatatctctgtttgatgacagtctgatctacagagcaagttccag
ggcagccagggctacccagagaaactctgtctcataagcccataaatcag
tgacattttagaactacagattaaaaaaaaatattctcagcctcctcctt
agtaaatgtaaaagagaaaggtacagcaagtttgcaggaggacacggact
acagtcaaaagagctggattaagagggggagcccttaaggtggcaagcaa
tcctttagattagaagatacatcaccgtggtcataggctgccacaatgag
gtcttgaagagaggggagagcacttccaaatacacagaataaaagggttc
tgatacttacagcgtttcagaggagtcatgggccaagttcgtaaatatgt
aatttagcttagcctgtcctctgtgccaagaggagttaggcataacacaa
caaaacaacacatatgcgttgttacaaatttccccatccagagagggtag
gaaaaggggagagaggagagactgcttggagacagactgatttctaggaa
aggaaggggctggtcttatgactatagacttcatctgttctcccactgat
ttttctcctttctctccaagccatattgcattctgttatcagaaaaaggt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_4790376_4791453
seq2: B6Ng01-277B20.g_99_1162

seq1  CATTAACAGAAAGAACACAGTGCATCAGGACTTTGTTCCTGTAGGCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACAGAAAGAACACAGTGCATCAGGACTTTGTTCCTGTAGGCTGGG  50

seq1  GGCTTATCTTTGTTCACATAGCAATCAGTTGATGTATGACTTTTACCCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTATCTTTGTTCACATAGCAATCAGTTGATGTATGACTTTTACCCGG  100

seq1  CGCCAAGGGGCAATAGACAGAGGGGAGGTTCCGGCCAGATGGTGTTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAAGGGGCAATAGACAGAGGGGAGGTTCCGGCCAGATGGTGTTGACT  150

seq1  TAGATAATGTAGCCCTGCTATGTCTTCACAGTCCCCTTTATCTTATGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAATGTAGCCCTGCTATGTCTTCACAGTCCCCTTTATCTTATGGTC  200

seq1  AAGATGTTCCCAGGAATGTTTTAACTATGAGGCATACCCAGGTTTGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTTCCCAGGAATGTTTTAACTATGAGGCATACCCAGGTTTGTTTT  250

seq1  TCTCTTTTCTCAGCCCCAGGCAGCCTCTAGGCTCACAAACAACCAGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTCTCAGCCCCAGGCAGCCTCTAGGCTCACAAACAACCAGCAAT  300

seq1  TTCTGAGTACTTTATATGACTTACAGGTCTTGAAATTTCATCTTTCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTACTTTATATGACTTACAGGTCTTGAAATTTCATCTTTCTTTC  350

seq1  AGATGTTAAAAAGCTGGGCATGGTAGCACATGCCTTTAATTCCAGTACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTAAAAAGCTGGGCATGGTAGCACATGCCTTTAATTCCAGTACTG  400

seq1  GAGAGTCAGAGGCAGGTGGATATCTCTGTTTGATGACAGTCTGATCTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCAGAGGCAGGTGGATATCTCTGTTTGATGACAGTCTGATCTACA  450

seq1  GAGCAAGTTCCAGGGCAGCCAGGGCTACCCAGAGAAACTCTGTCTCATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGTTCCAGGGCAGCCAGGGCTACCCAGAGAAACTCTGTCTCATAA  500

seq1  GCCCATAAATCAGTGACATTTTAGAACTACAGATTAAAAAAAAATATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATAAATCAGTGACATTTTAGAACTACAGATTAAAAAAAAATATTCT  550

seq1  CAGCCTCCTCCTTAGTAAATGTAAAAGAGAAAGGTACAGCAAGTTTGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCCTCCTTAGTAAATGTAAAAGAGAAAGGTACAGCAAGTTTGCAG  600

seq1  GAGGACACGGACTACAGTCAAAAGAGCTGGATTAAGAGGGGGAGCCCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACACGGACTACAGTCAAAAGAGCTGGATTAAGAGGGGGAGCCCTTA  650

seq1  AGGTGGCAAGCAATCCTTTAGATTAGAAGATACATCACCGTGGTCATAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCAAGCAATCCTTTAGATTAGAAGATACATCACCGTGGTCATAGG  700

seq1  CTGCCACAATGAGGTCTTGAAGAGAGGGGAGAGCACTTCCAAATACACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACAATGAGGTCTTGAAGAGAGGGGAGAGCACTTCCAAATACACAG  750

seq1  AATAAAAGGGTTCTGATACTTACAGCGTTTCAGAGGAGTCATGGGCCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGGGTTCTGATACTTACAGCGTTTCAGAGGAGTCATGGGCCAAG  800

seq1  TTCGTAAATATGTAATTTAGCTTAGCCTGTCCTCTGTGCCAAGAGGAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTAAATATGTAATTTAGCTTAGCCTGTCCTCTGTGCCAAGAGGAGTT  850

seq1  AGGCATAACACAACAAAACAACACAATATGCGTTGTTACAAA-TTCCCCA  899
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  AGGCATAACACAACAAAACAACAC-ATATGCGTTGTTACAAATTTCCCCA  899

seq1  TCCAAGAAGAGGGTAGGAAAAGGGGAGAGAGGAGGAAGAACTGCTTGGAG  949
      ||||   |||||||||||||||||||||||||||  || |||||||||||
seq2  TCCA--GAGAGGGTAGGAAAAGGGGAGAGAGGAG--AG-ACTGCTTGGAG  944

seq1  ACAGAACCTGATTTCTAGGAAAGGAAAGGGGCTGGTCTATGGCCTAATAG  999
      |||||  ||||||||||||||||| |||||||||||||   | || ||| 
seq2  ACAGA--CTGATTTCTAGGAAAGG-AAGGGGCTGGTCTTATGACT-ATA-  989

seq1  GACTTTCATCTGTTCTCCCACCTGGTTTTTTCCTTCTTTCTCTCCAAG-C  1048
      ||| |||||||||||||||| ||| |||||  || ||||||||||||| |
seq2  GAC-TTCATCTGTTCTCCCA-CTGATTTTT--CTCCTTTCTCTCCAAGCC  1035

seq1  ATATTGAAATTCTG-TATCAGAAAAAAGGTT  1078
      ||||||  |||||| |||||| |||||||||
seq2  ATATTG-CATTCTGTTATCAG-AAAAAGGTT  1064