BAC Information

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BAC

Clone NameB6Ng01-277C23
Chromosome1 (Build37)
Map Location 53,869,310 - 53,870,444
singlet/doubletsinglet
Overlap geneHecw2
Upstream geneInpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b
Downstream gene4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277C23.bB6Ng01-277C23.g
ACCGA077770GA077771
length1,120888
definitionB6Ng01-277C23.b B6Ng01-277C23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactgtgtacattttcccgatatgctgtgattaattgctagatat
tttaaaattgttttcatgcattataaagcataaaatcggtcattagtgat
tcattgagtaagtttgtcttcagccataattacacacataccacttgcat
atacattgtcacagaccaccttatctttaaagttatcgcataatgacttg
gtttcctttttcacacttgtcctgtgaaggttgaaacctatagtgcacac
catgcaggcactcataagcaagaaataaatattctgctataacttagggc
ttaaacaaatgtactttcaggaaatatatatttttttaatgatttcattt
cacttgcgctaatttagagattgggtcagtgctgccagtttggcttgaag
tgttatgtatgggagagtttcaagattctcctgagtccctaaaagtcacc
atggagtttatcatgtgcaggttcttcttttatcttggaacatgggacca
aatgggaaaggtttggcagtcaagaactgttgactgaaagactgttgggt
tgttccatgggcaccaagctcaccccaatccttccaaaagaactcacagc
cagtccccaaacacaggagcatgtgttcccggaaagcagcactcagtttg
ttataatggaagccaaggcttgaggctaccaatgctgtgtccacttttcg
ggaggccagcttctagaaccgcctggccatgaagagctgagcatcatgct
tccaggtcactcaagtccaaaggtactggtctcttcaactgctgtcaaga
gtttttcataaagcatggaaaaggaagggtatggaggcagatccaggcgg
ttaaaacaagtgtgggctctgcaaatagaaaaagcacatcatttagcaga
gggctgagcaaacaaagtcatgctcctgtgcgcgtgcatgcgtgcgtgcg
tgcgtgcgtgcatgctgagtgtgcgcatgctcgcgcacatgtgtgcatgt
actagagtgtgtctctttcatatcaaattatttgtacatttcacggctac
tttgggaaaagtgaagaatatttcactagtagcctgtgacccagtccagt
aactgcgattggaaaataaa
gaattccagaaattctttaatttctttatttctcccctgacctagttatc
aatgagtagagagttgtttcatttccatgggtatgtggactttctgttgt
tcttgttattgaagtctagccttagtctgttaggatgcatgggactattt
caatcttcttgtatctgttgaggcttgttttgtgatggaatatgtggtca
attttggagaaggtgccatgaggtgctgagaagagggtatattcttttgt
tttaggttgaaatgttccgtgcatatgtgttaaatccatttggtttataa
cttttattagtttcactgtgtttctgtttagtttctgtttcaatgacctg
tccattggtgagattgaggtgttgaagtctctcactattactgtgtgagg
ttcaatgtgtgttttgagctttaatcccagcactcgggaggcagaggcag
gcggatttctgagttcgaagccagcctggtctacaaagtgagttccagga
cagccgagataacacagaaaaaccctgtatcgaaaaaacaaaaacaaaag
tttcttttatgaatgtgggtgctcttgcatttggggcatagatattcaga
attgagactttctcttgatggatttttttctctgatgaatatgaagtgtc
tttccccatcttgttataacttttgttttaaagtctattttactggatat
tagaatggcaactcctgcttgtttcttggtatcatttacttggaaaactt
ttttctagccttttacgctgaggtaatgtctgtctttgtcattgaggtgt
gcttcttttttttttttccatttttattaggtatttagcacatttacatt
gccaatgctataccaaagtcccccatacccaccacccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_53869310_53870444
seq2: B6Ng01-277C23.b_48_1167

seq1  GAATTCACTGTGTACATTTTCCCGATATGCTGTGATTAATTGCTAGATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGTACATTTTCCCGATATGCTGTGATTAATTGCTAGATAT  50

seq1  TTTAAAATTGTTTTCATGCATTATAAAGCATAAAATCGGTCATTAGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATTGTTTTCATGCATTATAAAGCATAAAATCGGTCATTAGTGAT  100

seq1  TCATTGAGTAAGTTTGTCTTCAGCCATAATTACACACATACCACTTGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAGTAAGTTTGTCTTCAGCCATAATTACACACATACCACTTGCAT  150

seq1  ATACATTGTCACAGACCACCTTATCTTTAAAGTTATCGCATAATGACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTGTCACAGACCACCTTATCTTTAAAGTTATCGCATAATGACTTG  200

seq1  GTTTCCTTTTTCACACTTGTCCTGTGAAGGTTGAAACCTATAGTGCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTTTTCACACTTGTCCTGTGAAGGTTGAAACCTATAGTGCACAC  250

seq1  CATGCAGGCACTCATAAGCAAGAAATAAATATTCTGCTATAACTTAGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGGCACTCATAAGCAAGAAATAAATATTCTGCTATAACTTAGGGC  300

seq1  TTAAACAAATGTACTTTCAGGAAATATATATTTTTTTAATGATTTCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAAATGTACTTTCAGGAAATATATATTTTTTTAATGATTTCATTT  350

seq1  CACTTGCGCTAATTTAGAGATTGGGTCAGTGCTGCCAGTTTGGCTTGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCGCTAATTTAGAGATTGGGTCAGTGCTGCCAGTTTGGCTTGAAG  400

seq1  TGTTATGTATGGGAGAGTTTCAAGATTCTCCTGAGTCCCTAAAAGTCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGTATGGGAGAGTTTCAAGATTCTCCTGAGTCCCTAAAAGTCACC  450

seq1  ATGGAGTTTATCATGTGCAGGTTCTTCTTTTATCTTGGAACATGGGACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTTTATCATGTGCAGGTTCTTCTTTTATCTTGGAACATGGGACCA  500

seq1  AATGGGAAAGGTTTGGCAGTCAAGAACTGTTGACTGAAAGACTGTTGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAAAGGTTTGGCAGTCAAGAACTGTTGACTGAAAGACTGTTGGGT  550

seq1  TGTTCCATGGGCACCAAGCTCACCCCAATCCTTCCAAAAGAACTCACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCATGGGCACCAAGCTCACCCCAATCCTTCCAAAAGAACTCACAGC  600

seq1  CAGTCCCCAAACACAGGAGCATGTGTTCCCGGAAAGCAGCACTCAGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCCAAACACAGGAGCATGTGTTCCCGGAAAGCAGCACTCAGTTTG  650

seq1  TTATAATGGAAGCCAAGGCTTGAGGCTACCAATGCTGTGTCCACTTTTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATGGAAGCCAAGGCTTGAGGCTACCAATGCTGTGTCCACTTTTCG  700

seq1  GGAGGCCAGCTTCTAGAACCGCCTGGCCATGAAGAGCTGAGCATCATGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCAGCTTCTAGAACCGCCTGGCCATGAAGAGCTGAGCATCATGCT  750

seq1  TCCAGGTCACTCAAGTCCAAAGGTACTGGTCTCTTCAACTGCTGTCAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTCACTCAAGTCCAAAGGTACTGGTCTCTTCAACTGCTGTCAAGA  800

seq1  GTTTTTCATAAAGCATGGAAAAGGAAGGGTATGGAGGCAGATCCAGGCGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCATAAAGCATGGAAAAGGAAGGGTATGGAGGCAGATCCAGGCGG  850

seq1  TTAAAACAAGTGTGGGCTCTGCAAATAGAAAAAGCACATCATTTAGCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAAGTGTGGGCTCTGCAAATAGAAAAAGCACATCATTTAGCAGA  900

seq1  GGGGCTGAGCAAACAAAGTCCATGCTCCTGTGCGCGTGCATGCGTGCGTG  950
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  -GGGCTGAGCAAACAAAGT-CATGCTCCTGTGCGCGTGCATGCGTGCGTG  948

seq1  CGTGCGTGCGTGCATGCTTGAGTGTGCGCATGCTCGCGCACATGTGTGCA  1000
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CGTGCGTGCGTGCATGC-TGAGTGTGCGCATGCTCGCGCACATGTGTGCA  997

seq1  TGTACTAAGAGTGTGTCTCTTTCATATTCAAATTTATTTGTTACCATTTT  1050
      |||||| ||||||||||||||||||| ||||| ||||||| |||   |||
seq2  TGTACT-AGAGTGTGTCTCTTTCATA-TCAAA-TTATTTG-TAC--ATTT  1041

seq1  CACGGCTACTTGGGAAAAAGTGAAG-ATATTTCAACTTAGTAGCCCCTGT  1099
      ||||||||||| || |||||||||| ||||||||   ||||||  |||||
seq2  CACGGCTACTTTGGGAAAAGTGAAGAATATTTCA--CTAGTAG--CCTGT  1087

seq1  GACCCAGTCCCCAGTTAACTGCGATTGGTAAATAAA  1135
      ||||||||  |||| ||||||||||||| |||||||
seq2  GACCCAGT--CCAG-TAACTGCGATTGGAAAATAAA  1120