BAC Information

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BAC

Clone NameB6Ng01-277G01
Chromosome1 (Build37)
Map Location 97,419,667 - 97,555,328
singlet/doubletdoublet
Overlap geneRnu7-ps2, St8sia4
Upstream geneLOC100040685, LOC383603, Tmem157, LOC100041686
Downstream geneGm1833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277G01.bB6Ng01-277G01.g
ACCGA077914GA077915
length1,0551,132
definitionB6Ng01-277G01.b B6Ng01-277G01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,419,667 - 97,420,709)(97,554,185 - 97,555,328)
sequence
gaattcttctaaaacatgccaaaaattaaatcaaaagctttgttttgggt
aatttaaatctctgccttgtgtttcaaccattttaaagaagtgtgacata
ttctggagaaagaaaaacagctgtcaatacgtgatctctttgaacttggc
atggctgatcattttgaccagtcctctttgtcctttatagaattttacat
tgtactgctagataaacttaaaattggataaataaatccaattgttctct
ttttgctgagggagttgttcagaaacaggaggcctgtgtgatgtaggata
agcagcagagcatgttcatcagttgtgacctttatcacacatggcatcaa
agtgcaattcagacacatgcacctagggggaagggcaggttaaagataaa
gagggtggtcttcaaagaaaggtctttaagtgatatttaattaaattggc
tgctttatcttacaaagtgtggagtctatcctttatactagagtcctata
ggattctagctaccctgtaaatttgaatagttatacttttaacatcattg
taccatgtcacagcatgaaaaagatactttctgatacatttagataagtt
tgatgagtaaaagaatcaacactagcctgtgtgtttcaatgcggatctct
atgtttaattatacttaaatgatacttcttcacttatgcttaataatctc
ctttctcttatgtaccaattactccatgggtttggaagtaggaagtattt
atctttcactatttcaacatatattacaatttgtgtgctaaagttgacat
tttgactcagttattgtaaataccaaagtttctattatctataaaacaag
tgtcttaatcaatcactagataattattggttgtactaaattgcaacttc
aaagagacatataatacagcatagaatttaatattttttcacaattattg
tctataagttttggcctatatgtatttgcctattatattatacatatata
ttaacaaattattggcctgttaatatacatattatggtttttaccaaaat
tactg

gaattcattgtactttgaagtatccacaaagtttaaggagttaaagtact
ttatagtcatagtctcaatcaatattattaccttgttcttaatggcttca
ttgtattgtgaagattttgtggatattatgttcttaggagatgacacatt
taagtttcattacttgtgactaaatctgtgaatgttgtcagcttctgtct
accatctgtctcaacctattttctgtattttggttctttattttcgcagt
tttcatatattaacaaaaccctaaaaaatacaatgccaaataagggtgta
gagacatatgatctcagctttcatcctccaaacagtctagccaataatta
gtgaaatattttgattcttagtgcaatatttcttaatcatataagactac
taattaaacatgagtgcaggttcatatgtgtttcgtgtaaaaaaacaaaa
aaactatgctgttgcatttatagatttctttcgtggaagatggcacatac
aatcgtacaccatcgtctacctactgtgctcagcaaatgacaataatgtc
acttgtagctgaagaagcttattgagcaggggcacacagtccccttcagt
gctttattttaaagtgcccatcctttaatagagcaagttgtgaaaaatcg
tgttttagtattaaatatagagtgcttctttatcaagtacatggtatgtt
tttgctttaaaaataaaaataaattttgatcacccaattcatagccaatt
atgaaatagtgaagttaaaaaacaaaaatcaaaaaacagtgttcttcaca
tgtttgggaataattttagttttcatgtgataggattgtttacgattttt
ctttttcagactacaatatctttcccctaacatttttctaagccccaact
tattaagttataaaagacttcatttaggaaagtcatgtaggattttttct
ttcatttcgtagcacaataaagcacacagaaatgtcaaaggttctttctt
ttctttcagtgaactgtgttaatgtcatcatgtatttttcacatcaaatt
tagaacacactgattcctctcctctattctaataatgaactactgcatac
gaatgtatgtctgtacacaccacacgcacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_97419667_97420709
seq2: B6Ng01-277G01.b_44_1098

seq1  GAATTCTTCTAAAACATGCCAAAAATTAAATCAAAAGCTTTGTTTTGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTAAAACATGCCAAAAATTAAATCAAAAGCTTTGTTTTGGGT  50

seq1  AATTTAAATCTCTGCCTTGTGTTTCAACCATTTTAAAGAAGTGTGACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAATCTCTGCCTTGTGTTTCAACCATTTTAAAGAAGTGTGACATA  100

seq1  TTCTGGAGAAAGAAAAACAGCTGTCAATACGTGATCTCTTTGAACTTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGAAAGAAAAACAGCTGTCAATACGTGATCTCTTTGAACTTGGC  150

seq1  ATGGCTGATCATTTTGACCAGTCCTCTTTGTCCTTTATAGAATTTTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGATCATTTTGACCAGTCCTCTTTGTCCTTTATAGAATTTTACAT  200

seq1  TGTACTGCTAGATAAACTTAAAATTGGATAAATAAATCCAATTGTTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGCTAGATAAACTTAAAATTGGATAAATAAATCCAATTGTTCTCT  250

seq1  TTTTGCTGAGGGAGTTGTTCAGAAACAGGAGGCCTGTGTGATGTAGGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGAGGGAGTTGTTCAGAAACAGGAGGCCTGTGTGATGTAGGATA  300

seq1  AGCAGCAGAGCATGTTCATCAGTTGTGACCTTTATCACACATGGCATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGAGCATGTTCATCAGTTGTGACCTTTATCACACATGGCATCAA  350

seq1  AGTGCAATTCAGACACATGCACCTAGGGGGAAGGGCAGGTTAAAGATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAATTCAGACACATGCACCTAGGGGGAAGGGCAGGTTAAAGATAAA  400

seq1  GAGGGTGGTCTTCAAAGAAAGGTCTTTAAGTGATATTTAATTAAATTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGGTCTTCAAAGAAAGGTCTTTAAGTGATATTTAATTAAATTGGC  450

seq1  TGCTTTATCTTACAAAGTGTGGAGTCTATCCTTTATACTAGAGTCCTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATCTTACAAAGTGTGGAGTCTATCCTTTATACTAGAGTCCTATA  500

seq1  GGATTCTAGCTACCCTGTAAATTTGAATAGTTATACTTTTAACATCATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTAGCTACCCTGTAAATTTGAATAGTTATACTTTTAACATCATTG  550

seq1  TACCATGTCACAGCATGAAAAAGATACTTTCTGATACATTTAGATAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGTCACAGCATGAAAAAGATACTTTCTGATACATTTAGATAAGTT  600

seq1  TGATGAGTAAAAGAATCAACACTAGCCTGTGTGTTTCAATGCGGATCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGTAAAAGAATCAACACTAGCCTGTGTGTTTCAATGCGGATCTCT  650

seq1  ATGTTTAATTATACTTAAATGATACTTCTTCACTTATGCTTAATAATCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAATTATACTTAAATGATACTTCTTCACTTATGCTTAATAATCTC  700

seq1  CTTTCTCTTATGTACCAATTACTCCATGGGTTTGGAAGTAGGAAGTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTTATGTACCAATTACTCCATGGGTTTGGAAGTAGGAAGTATTT  750

seq1  ATCTTTCACTATTTCAACATATATTACAATTTGTGTGCTAAAGTTGACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCACTATTTCAACATATATTACAATTTGTGTGCTAAAGTTGACAT  800

seq1  TTTGACTCAGTTATTGTAAATACCAAAGTTTCTATTATCTATAAAACAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTCAGTTATTGTAAATACCAAAGTTTCTATTATCTATAAAACAAG  850

seq1  TGTCTTAATCAATCACTAGATAATTATTGGTTGTACTAAATTGCAACTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAATCAATCACTAGATAATTATTGGTTGTACTAAATTGCAACTTC  900

seq1  AAAGAGACATATAATACAGCATAGAA-TTAATATTTTTTCACAAATTATT  949
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  AAAGAGACATATAATACAGCATAGAATTTAATATTTTTTCAC-AATTATT  949

seq1  GTCTATAAGTTTT-GCCTATATGTATTTGCCTA-TATA-TATACATATAT  996
      ||||||||||||| ||||||||||||||||||| |||| |||||||||||
seq2  GTCTATAAGTTTTGGCCTATATGTATTTGCCTATTATATTATACATATAT  999

seq1  ATT-ACAAATTATT-GCCTGT--ATATACATA-TATG--TTTTAC--AAA  1037
      ||| |||||||||| ||||||  ||||||||| ||||  ||||||  |||
seq2  ATTAACAAATTATTGGCCTGTTAATATACATATTATGGTTTTTACCAAAA  1049

seq1  TTACTG  1043
      ||||||
seq2  TTACTG  1055


seq1: chr1_97554185_97555328
seq2: B6Ng01-277G01.g_65_1196 (reverse)

seq1  TGTGTGTGTGTGTGTGTGTACAGACATACATATCGTAATGCAAGTAGTTT  50
      |||||| ||||| |||||||||||||||||| |||| |||| ||||| ||
seq2  TGTGTGCGTGTG-GTGTGTACAGACATACAT-TCGT-ATGC-AGTAG-TT  45

seq1  CAATTTATTAGAATAGAGGAGA-GAATCAGTGTG-TCTAAATTTGATGGT  98
      ||  |||||||||||||||||| ||||||||||| |||||||||||| ||
seq2  CA--TTATTAGAATAGAGGAGAGGAATCAGTGTGTTCTAAATTTGAT-GT  92

seq1  GAAAAATAACATTGATTGACAATAACACAGTTCACTGAAAGAAAAGGAAA  148
      ||||||| ||| ||| ||||| ||||||||||||||||||||||| ||||
seq2  GAAAAAT-ACA-TGA-TGACATTAACACAGTTCACTGAAAGAAAA-GAAA  138

seq1  GAA-CTTTGACATTTCTGTGTGCTTTATTGTGCCTACGAAATGAAAGAAA  197
      ||| |||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAACCTTTGACATTTCTGTGTGCTTTATTGTG-CTACGAAATGAAAGAAA  187

seq1  AATCCTTACATGACTTTTCCTAAATGAAGTCTTTTTATAACTTAATAAGT  247
      ||  | |||||||| |||||||||||||||| ||||||||||||||||||
seq2  AAATCCTACATGAC-TTTCCTAAATGAAGTC-TTTTATAACTTAATAAGT  235

seq1  TGGGGCTTAGAAAAATGTTAGGGGAAAGATATTGTAGTCTGAAAAAGAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTTAGAAAAATGTTAGGGGAAAGATATTGTAGTCTGAAAAAGAAA  285

seq1  AATCGTAAACAATCCTATCACATGAAAACTAAAATTATTCCCAAACATGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTAAACAATCCTATCACATGAAAACTAAAATTATTCCCAAACATGT  335

seq1  GAAGAACACTGTTTTTTGATTTTTGTTTTTTAACTTCACTATTTCATAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACACTGTTTTTTGATTTTTGTTTTTTAACTTCACTATTTCATAAT  385

seq1  TGGCTATGAATTGGGTGATCAAAATTTATTTTTATTTTTAAAGCAAAAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATGAATTGGGTGATCAAAATTTATTTTTATTTTTAAAGCAAAAAC  435

seq1  ATACCATGTACTTGATAAAGAAGCACTCTATATTTAATACTAAAACACGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATGTACTTGATAAAGAAGCACTCTATATTTAATACTAAAACACGA  485

seq1  TTTTTCACAACTTGCTCTATTAAAGGATGGGCACTTTAAAATAAAGCACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCACAACTTGCTCTATTAAAGGATGGGCACTTTAAAATAAAGCACT  535

seq1  GAAGGGGACTGTGTGCCCCTGCTCAATAAGCTTCTTCAGCTACAAGTGAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGACTGTGTGCCCCTGCTCAATAAGCTTCTTCAGCTACAAGTGAC  585

seq1  ATTATTGTCATTTGCTGAGCACAGTAGGTAGACGATGGTGTACGATTGTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGTCATTTGCTGAGCACAGTAGGTAGACGATGGTGTACGATTGTA  635

seq1  TGTGCCATCTTCCACGAAAGAAATCTATAAATGCAACAGCATAGTTTTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCATCTTCCACGAAAGAAATCTATAAATGCAACAGCATAGTTTTTT  685

seq1  TGTTTTTTTACACGAAACACATATGAACCTGCACTCATGTTTAATTAGTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTACACGAAACACATATGAACCTGCACTCATGTTTAATTAGTA  735

seq1  GTCTTATATGATTAAGAAATATTGCACTAAGAATCAAAATATTTCACTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATATGATTAAGAAATATTGCACTAAGAATCAAAATATTTCACTAA  785

seq1  TTATTGGCTAGACTGTTTGGAGGATGAAAGCTGAGATCATATGTCTCTAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGCTAGACTGTTTGGAGGATGAAAGCTGAGATCATATGTCTCTAC  835

seq1  ACCCTTATTTGGCATTGTATTTTTTAGGGTTTTGTTAATATATGAAAACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTATTTGGCATTGTATTTTTTAGGGTTTTGTTAATATATGAAAACT  885

seq1  GCGAAAATAAAGAACCAAAATACAGAAAATAGGTTGAGACAGATGGTAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAAATAAAGAACCAAAATACAGAAAATAGGTTGAGACAGATGGTAGA  935

seq1  CAGAAGCTGACAACATTCACAGATTTAGTCACAAGTAATGAAACTTAAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTGACAACATTCACAGATTTAGTCACAAGTAATGAAACTTAAAT  985

seq1  GTGTCATCTCCTAAGAACATAATATCCACAAAATCTTCACAATACAATGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATCTCCTAAGAACATAATATCCACAAAATCTTCACAATACAATGA  1035

seq1  AGCCATTAAGAACAAGGTAATAATATTGATTGAGACTATGACTATAAAGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTAAGAACAAGGTAATAATATTGATTGAGACTATGACTATAAAGT  1085

seq1  ACTTTAACTCCTTAAACTTTGTGGATACTTCAAAGTACAATGAATTC  1144
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAACTCCTTAAACTTTGTGGATACTTCAAAGTACAATGAATTC  1132


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