BAC Information

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BAC

Clone NameB6Ng01-277L19
Chromosome1 (Build37)
Map Location 134,937,329 - 135,111,357
singlet/doubletdoublet
Overlap genePik3c2b, Ppp1r15b
Upstream geneMfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636
Downstream genePlekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277L19.bB6Ng01-277L19.g
ACCGA078173GA078174
length1,188910
definitionB6Ng01-277L19.b B6Ng01-277L19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,110,171 - 135,111,357)(134,937,329 - 134,938,235)
sequence
gaattctctccagcttccggtccattgctaggccagctcttaccctatct
aaggaggccagcggacttcacatcagactgcggccccagccttcatcact
tcacagtgccattactgtgagacacagactggagggcttggcaggtggct
tccccaaggtcagtactaagagccatcagggatgggagacacttactatg
gcgccttgggggctccctacccctacacccctaccagccacaactataat
cctcacattgtagccacagctactctgctcttctgtattttcctccccca
gaacctaactgtgggctgctgcccgggtcaagctcatctttacacctcat
ccctgtcgtttggctgctccagccccaatgcacagaagagatccttcatt
cttgggatttcgaatgtgcccatccatcctacagagcatcctgaaggatg
cattattcttcccaccctaaatctaagccacctcttccagggagccctcc
ctcattggctatgttcaaatctgaccttgttgtctgtgtttccatgggac
ttaatctcctccctgcctttacagtgtctggagccatcatatgacacatc
catttggcaaacattaactagaagcctttgccacataccagccatctact
gtgcaactgctaggcaccagacacttggcccttgggaaacctgcactcaa
agcagtgatcttcagaccctttcctggaagaagctaagctctgtgcctgg
gctgcactttcccaaggactgtctcctctctgctccatcaagcacctgac
ttacaaaaacttctgcttttgcacacaggcatcactggctccttttcgac
agcgcggtcactcctacacgcagggaaggcagaaggtattaggctactga
aaagacagcacaccatgcccaatgtgccttcttgcttgccagcctggcat
ccaggaaactcaggccacatggctttccacagtcaatctcctggtgttcc
cagaccatgaagatgagactttggagagatgggatggaacccgcttcctc
cccacgctgcctcagtcaggttcacgagacagagataggctgagtaagag
ggtattgtagagcctacagccctttgctaaatcatgcctgcatccaaggc
acgagcttgtgggtgccaaacacaggaggaactctgtg
gaattccacagaagttaaatcatatactgtctgtatctctttatctgact
taacacatggagtgtgatttccccctatgttcattagtgcagatacaaat
gagactttattattattattattattattattattattttaggtttcttg
gtgtagctctggctgtcctggaactcactttgtagaccaggctggcctcg
aactcagagatccacctgactctgctgagattaaaggtatgtgccaccac
tgataggcagtttccttcattcttaaaactgaagagtattctgcactaga
taaggatcagtcatgttttccttacacgctcatttattaatggacccctt
aaggcgggtatgtggctgtcaggaataatgatgtaatgagaaggctggct
tggaattccccagctgatctgctgacctcaaaggtacagcaatcctcctg
cctctgcctcctaaggctgtgattacaggtgtgtcaatctggcctctcct
gcattgctaataatagtactctagccttctaaacccacagtttagtgtct
ggccctgaagccatttacaacaaatgaaaaagttgcatgccttaaaaaag
actagggggtcaaaaagatggcgccacagttcagaatactgactgctctt
ccagaagacctgggtttgattctcagcaccacaaaagtgacttacaacca
cctgaacttacagatctaggaaatctatcctcctcctctggcctctacag
gccaacgagaatgcattctgtacacaaacaaacatgcagccaaaacactc
agacacataaaatagtgataaaaagacattttcaagaagtcttcaatgga
gccaactgtagcagtgcaggcctgtaattgctgcactcagaggcggtggg
ggttgtgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_135110171_135111357
seq2: B6Ng01-277L19.b_47_1234 (reverse)

seq1  CACA-AGTTCTTCCTGTGTTTGGCA-CCAC-ACCTCTGTGCTGGGAATGC  47
      |||| ||||| |||||||||||||| |||| | ||| ||||   | ||||
seq2  CACAGAGTTCCTCCTGTGTTTGGCACCCACAAGCTC-GTGCCTTGGATGC  49

seq1  AGGCATGATTGTGGCAAA-GGCTGTAGGCCTCTTACAATACCCTCTTTAC  96
      |||||||||| | ||||| ||||||||| ||| ||||||||||||||   
seq2  AGGCATGATT-TAGCAAAGGGCTGTAGG-CTC-TACAATACCCTCTT--A  94

seq1  CTCAGCTTTCTCTCTGTCTCTGTTGACCTGACTGAGGCAGCGTGGG--AG  144
      ||||||  | |||||||||| ||  |||||||||||||||||||||   |
seq2  CTCAGC-CTATCTCTGTCTC-GTGAACCTGACTGAGGCAGCGTGGGGAGG  142

seq1  AAGC-GGTTCCAT-CCATCTCTCCAAAGTTCTCATCTTCATGGTCTGGG-  191
      |||| |||||||| |||||||||||||| |||||||||||||||||||| 
seq2  AAGCGGGTTCCATCCCATCTCTCCAAAG-TCTCATCTTCATGGTCTGGGA  191

seq1  ACA-CAGGAGATTGACTGTGG-AAGCCATGTGGCCTGAGTTTCCTGGATG  239
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACACCAGGAGATTGACTGTGGAAAGCCATGTGGCCTGAGTTTCCTGGATG  241

seq1  CCCAGGCTGGCAAGC-AGAAGGCACATTGGGCATGGTGTTGCTGTCTTTT  288
       |||||||||||||| |||||||||||||||||||||| |||||||||||
seq2  -CCAGGCTGGCAAGCAAGAAGGCACATTGGGCATGGTG-TGCTGTCTTTT  289

seq1  CAGTAGCCTAATACCTTCTGCCTTCCCTGCGTTGTAGGAGTGACCGCGCT  338
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGTAGCCTAATACCTTCTGCCTTCCCTGCG-TGTAGGAGTGACCGCGCT  338

seq1  GTCG-AAAGGAGCCAGTGATGCCTGTGTGCAAAAGCAGAAGTTTTTGTAA  387
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAAAAGGAGCCAGTGATGCCTGTGTGCAAAAGCAGAAGTTTTTGTAA  388

seq1  GTCAGGTGCTTGATGGAGCAGAGAGGAGACAGTCCTTGGGAAAGTGCAGC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTGCTTGATGGAGCAGAGAGGAGACAGTCCTTGGGAAAGTGCAGC  438

seq1  CCAGGCACAGAGCTTAGCTTCTTCCAGGAAAGGGTCTGAAGATCACTGCT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCACAGAGCTTAGCTTCTTCCAGGAAAGGGTCTGAAGATCACTGCT  488

seq1  TTGAGTGCAGGTTTCCCAAGGGCCAAGTGTCTGGTGCCTAGCAGTTGCAC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGCAGGTTTCCCAAGGGCCAAGTGTCTGGTGCCTAGCAGTTGCAC  538

seq1  AGTAGATGGCTGGTATGTGGCAAAGGCTTCTAGTTAATGTTTGCCAAATG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATGGCTGGTATGTGGCAAAGGCTTCTAGTTAATGTTTGCCAAATG  588

seq1  GATGTGTCATATGATGGCTCCAGACACTGTAAAGGCAGGGAGGAGATTAA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTCATATGATGGCTCCAGACACTGTAAAGGCAGGGAGGAGATTAA  638

seq1  GTCCCATGGAAACACAGACAACAAGGTCAGATTTGAACATAGCCAATGAG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATGGAAACACAGACAACAAGGTCAGATTTGAACATAGCCAATGAG  688

seq1  GGAGGGCTCCCTGGAAGAGGTGGCTTAGATTTAGGGTGGGAAGAATAATG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCTCCCTGGAAGAGGTGGCTTAGATTTAGGGTGGGAAGAATAATG  738

seq1  CATCCTTCAGGATGCTCTGTAGGATGGATGGGCACATTCGAAATCCCAAG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTCAGGATGCTCTGTAGGATGGATGGGCACATTCGAAATCCCAAG  788

seq1  AATGAAGGATCTCTTCTGTGCATTGGGGCTGGAGCAGCCAAACGACAGGG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGGATCTCTTCTGTGCATTGGGGCTGGAGCAGCCAAACGACAGGG  838

seq1  ATGAGGTGTAAAGATGAGCTTGACCCGGGCAGCAGCCCACAGTTAGGTTC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTGTAAAGATGAGCTTGACCCGGGCAGCAGCCCACAGTTAGGTTC  888

seq1  TGGGGGAGGAAAATACAGAAGAGCAGAGTAGCTGTGGCTACAATGTGAGG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGGAAAATACAGAAGAGCAGAGTAGCTGTGGCTACAATGTGAGG  938

seq1  ATTATAGTTGTGGCTGGTAGGGGTGTAGGGGTAGGGAGCCCCCAAGGCGC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGTTGTGGCTGGTAGGGGTGTAGGGGTAGGGAGCCCCCAAGGCGC  988

seq1  CATAGTAAGTGTCTCCCATCCCTGATGGCTCTTAGTACTGACCTTGGGGA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTAAGTGTCTCCCATCCCTGATGGCTCTTAGTACTGACCTTGGGGA  1038

seq1  AGCCACCTGCCAAGCCCTCCAGTCTGTGTCTCACAGTAATGGCACTGTGA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCTGCCAAGCCCTCCAGTCTGTGTCTCACAGTAATGGCACTGTGA  1088

seq1  AGTGATGAAGGCTGGGGCCGCAGTCTGATGTGAAGTCCGCTGGCCTCCTT  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGAAGGCTGGGGCCGCAGTCTGATGTGAAGTCCGCTGGCCTCCTT  1138

seq1  AGATAGGGTAAGAGCTGGCCTAGCAATGGACCGGAAGCTGGAGAGAATTC  1187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGGTAAGAGCTGGCCTAGCAATGGACCGGAAGCTGGAGAGAATTC  1188

seq1: chr1_134937329_134938235
seq2: B6Ng01-277L19.g_64_973

seq1  GAATTCCACAGAAGTTAAATCATATACTGTCTGTATCTCTTTATCTGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGAAGTTAAATCATATACTGTCTGTATCTCTTTATCTGACT  50

seq1  TAACACATGGAGTGTGATTTCCCCCTATGTTCATTAGTGCAGATACAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACATGGAGTGTGATTTCCCCCTATGTTCATTAGTGCAGATACAAAT  100

seq1  GAGACTTTATTATTATTATTATTATTATTATTATTATTTTAGGTTTCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTTATTATTATTATTATTATTATTATTATTATTTTAGGTTTCTTG  150

seq1  GTGTAGCTCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCTCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCG  200

seq1  AACTCAGAGATCCACCTGACTCTGCTGAGATTAAAGGTATGTGCCACCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAGATCCACCTGACTCTGCTGAGATTAAAGGTATGTGCCACCAC  250

seq1  TGATAGGCAGTTTCCTTCATTCTTAAAACTGAAGAGTATTCTGCACTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGCAGTTTCCTTCATTCTTAAAACTGAAGAGTATTCTGCACTAGA  300

seq1  TAAGGATCAGTCATGTTTTCCTTACACGCTCATTTATTAATGGACCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATCAGTCATGTTTTCCTTACACGCTCATTTATTAATGGACCCCTT  350

seq1  AAGGCGGGTATGTGGCTGTCAGGAATAATGATGTAATGAGAAGGCTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGGGTATGTGGCTGTCAGGAATAATGATGTAATGAGAAGGCTGGCT  400

seq1  TGGAATTCCCCAGCTGATCTGCTGACCTCAAAGGTACAGCAATCCTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTCCCCAGCTGATCTGCTGACCTCAAAGGTACAGCAATCCTCCTG  450

seq1  CCTCTGCCTCCTAAGGCTGTGATTACAGGTGTGTCAATCTGGCCTCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCCTAAGGCTGTGATTACAGGTGTGTCAATCTGGCCTCTCCT  500

seq1  GCATTGCTAATAATAGTACTCTAGCCTTCTAAACCCACAGTTTAGTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCTAATAATAGTACTCTAGCCTTCTAAACCCACAGTTTAGTGTCT  550

seq1  GGCCCTGAAGCCATTTACAACAAATGAAAAAGTTGCATGCCTTAAAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGAAGCCATTTACAACAAATGAAAAAGTTGCATGCCTTAAAAAAG  600

seq1  ACTAGGGGGTCAAAAAGATGGCGCCACAGTTCAGAATACTGACTGCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGGGTCAAAAAGATGGCGCCACAGTTCAGAATACTGACTGCTCTT  650

seq1  CCAGAAGACCTGGGTTTGATTCTCAGCACCAC-AAAGTGACTTACAACCA  699
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCAGAAGACCTGGGTTTGATTCTCAGCACCACAAAAGTGACTTACAACCA  700

seq1  CCTGAACTTACAGATCTAGGAAATCTATCCTCCTCCTCTGGCCTCTACAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACTTACAGATCTAGGAAATCTATCCTCCTCCTCTGGCCTCTACAG  750

seq1  G-CAACGAGAATGCATTCTGTACACAAACAAACATGCAGCCAAAACACTC  798
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACGAGAATGCATTCTGTACACAAACAAACATGCAGCCAAAACACTC  800

seq1  AGACACATAAAATAGTGATAAAAAGACA-TTTCAAGAAGTCTTCAATGGA  847
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGACACATAAAATAGTGATAAAAAGACATTTTCAAGAAGTCTTCAATGGA  850

seq1  GCCAACTGTAGCAGTGCAGGCCTGTAATTGCTGCACTCAAGAGGCGGTGG  897
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCCAACTGTAGCAGTGCAGGCCTGTAATTGCTGCACTC-AGAGGCGGTGG  899

seq1  GGG-TGTGCTG  907
      ||| |||||||
seq2  GGGTTGTGCTG  910