BAC Information

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BAC

Clone NameB6Ng01-277M01
Chromosome1 (Build37)
Map Location 152,272,118 - 152,273,254
singlet/doubletsinglet
Overlap geneTpr
Upstream geneLOC100042813, Pla2g4a, Ptgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331
Downstream geneEG625534, EG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277M01.bB6Ng01-277M01.g
ACCGA078185GA078186
length1,1881,154
definitionB6Ng01-277M01.b B6Ng01-277M01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaactaaatggagagaaactcgaagcaatcccactaaa
atcagggactagacaggctgcccactttctccatacctattcaatacagt
acttgaagtcttagccagagcaattcgacaacaaaaggacatcaagggga
tacaaaattggaaagcaagaagtcaaaatatcactatttttagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tataaacagcttcagtgcagtagctgggtataaaattaactcaaaaaaat
cagtggcctttctctacataaaggataaacaggatgagaaagaaattagg
gaaacaaaacccttcacaatagtcacaaataatataaaataccttggtgt
gacactaaggaagtgaaagatctataggataagaacttcaagtctctgaa
gaaagaaatcgatgaagatctcagaagatggaaagatctcccatgctcac
ggattggcaggattgatatagtcaaaatgacttttctgccgaaagcaatc
tacagattcaatgcaatccccatcaaaattccaactcaattcttcactga
gttagaaagggcaatttgcaaatacatctggaataacaaaagtcctagga
tagcaagaactattctcaacaataaaagaacttctggtggaatcaccatg
cctgacctcaagctgtagtacagatcaattatgacaaaaactgaatggta
ctggtacaatgacagacaggtagatcaatggaatagaattgaagacccac
atacctatggtcacttgatctatgacaagggagctaaaaacatccagtgg
aaaaatgacagcattttcaacaaatggtgctggcacaactggcagttacc
atgtagaagaatgcaaattgatccattctatctccttgtacaaagctcag
tctatggatcaagaactcaggtaaaacagagactgaatcttatagaggag
aaagtcggcaaatcctcgaagatattgggccacagcaaaactctaacaga
actgcagttgttgtctgtagaaatgaagaatggaacgactctatgaattg
caggctctgtagccaagaaaacttgttcgcttgagtac
gaattccaagcccaggattggctcaaggactgcctaggacatagggacat
tggaggaggctaatctaacttagctatatgtcaaaaaaaatcaatcctta
gaggcacttataataaaacaatactgaaggaaagcacacggatccgttct
ctactaaagcaaggacagatttggagcactcgttatacaggatgccctgg
ttccaggtgactaagtttctgtgaactttttgcctcgggactgcggccaa
gcttctagacctgtcactcaagtcactcctggagtgggtgtggcaatctg
tatctttataaatagtaagggcttctgcgctcagctggtaaggcacaaac
cttggcttgcatttgttgtaggttctgttcgagcctttccttttcctccc
gtagcatcttgttggtctccataacaacgttcattgtttcagttttcttc
atcagctcttcatgttgcgccattgtttttgcagttacctgaaacagtga
caaacacatagatcaacaaccagcactcagactcgtctttttcctaccag
ttctaatcttcccaataaaaaagtatagagaatttaaacttcaactttaa
ctgaaactttgaaagcttgcaggttattttcctgagacatgttaatttca
aatgagtttaaataaatgtaagagacttaaagaaaaaaggactacaaatg
ctgccagcactacaggtatttttgcttgtactttggtatgagctctaaag
tactgttactttgactcctggcttttccccttcccacacctgctcaggat
tctgaacatttagttatgttactctagtaacaggtacagtaagtgagctc
atggactcagcagtgagttgagagccaccagtgcttggagttaccatggt
gtgtttagtttaatttcttagtttcaatctattctatctagaatgactct
agacttttattttagaatgaatcacaaggtatttatatatagcagctgca
aagattagaaagctgggaattttataatactgttatactacagttccaga
tgattccgccatgccacaattcttcaattcctaccttctcatcttacgga
caagggaagaacttaagaaggaggggagccttagcatgttcagcatatcc
gagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_152272118_152273254
seq2: B6Ng01-277M01.g_64_1217 (reverse)

seq1  GCTC-GATATGCTGAACATTGCTTA-GCTTCCCTCC-TCTTA--GTCT--  43
      |||| ||||||||||||| |||| | ||| |||||| |||||   |||  
seq2  GCTCGGATATGCTGAACA-TGCTAAGGCTCCCCTCCTTCTTAAGTTCTTC  49

seq1  CCTTGTCTGT-AGATGAG-AGGTAGG-ATTGA--GATTGT-GCATG--CG  85
      ||||||| || ||||||| ||||||| |||||   ||||| |||||   |
seq2  CCTTGTCCGTAAGATGAGAAGGTAGGAATTGAAGAATTGTGGCATGGCGG  99

seq1  AATCATCTGG-ACTGTAGTAT-ACAGTA-TATAAAATT-CCAGCTTTCTA  131
      |||||||||| |||||||||| |||||| ||||||||| |||||||||||
seq2  AATCATCTGGAACTGTAGTATAACAGTATTATAAAATTCCCAGCTTTCTA  149

seq1  ATCTTTTGCAGCTGCTATATATAAATACCTTGTGATTCATTCTAAAATAA  181
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATC-TTTGCAGCTGCTATATATAAATACCTTGTGATTCATTCTAAAATAA  198

seq1  AAGTCTAGAGTCATTCTAGATAGAATAGATTGAAACTAAGAAATTAAACT  231
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTAGAGTCATTCTAGATAGAATAGATTGAAACTAAGAAATTAAACT  248

seq1  AAACACACCATGGTAACTCCAAGCACTGGTGGCTCTCAACTCACTGCTGA  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACCATGGTAACTCCAAGCACTGGTGGCTCTCAACTCACTGCTGA  298

seq1  GTCCATGAGCTCACTTACTGTACCTGTTACTAGAGTAACATAACTAAATG  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGAGCTCACTTACTGTACCTGTTACTAGAGTAACATAACTAAATG  348

seq1  TTCAGAATCCTGAGCAGGTGTGGGAAGGGGAAAAGCCAGGAGTCAAAGTA  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATCCTGAGCAGGTGTGGGAAGGGGAAAAGCCAGGAGTCAAAGTA  398

seq1  ACAGTACTTTAGAGCTCATACCAAAGTACAAGCAAAAATACCTGTAGTGC  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACTTTAGAGCTCATACCAAAGTACAAGCAAAAATACCTGTAGTGC  448

seq1  TGGCAGCATTTGTAGTCCTTTTTTCTTTAAGTCTCTTACATTTATTTAAA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCATTTGTAGTCCTTTTTTCTTTAAGTCTCTTACATTTATTTAAA  498

seq1  CTCATTTGAAATTAACATGTCTCAGGAAAATAACCTGCAAGCTTTCAAAG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTGAAATTAACATGTCTCAGGAAAATAACCTGCAAGCTTTCAAAG  548

seq1  TTTCAGTTAAAGTTGAAGTTTAAATTCTCTATACTTTTTTATTGGGAAGA  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTAAAGTTGAAGTTTAAATTCTCTATACTTTTTTATTGGGAAGA  598

seq1  TTAGAACTGGTAGGAAAAAGACGAGTCTGAGTGCTGGTTGTTGATCTATG  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACTGGTAGGAAAAAGACGAGTCTGAGTGCTGGTTGTTGATCTATG  648

seq1  TGTTTGTCACTGTTTCAGGTAACTGCAAAAACAATGGCGCAACATGAAGA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTCACTGTTTCAGGTAACTGCAAAAACAATGGCGCAACATGAAGA  698

seq1  GCTGATGAAGAAAACTGAAACAATGAACGTTGTTATGGAGACCAACAAGA  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGAAGAAAACTGAAACAATGAACGTTGTTATGGAGACCAACAAGA  748

seq1  TGCTACGGGAGGAAAAGGAAAGGCTCGAACAGAACCTACAACAAATGCAA  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACGGGAGGAAAAGGAAAGGCTCGAACAGAACCTACAACAAATGCAA  798

seq1  GCCAAGGTTTGTGCCTTACCAGCTGAGCGCAGAAGCCCTTACTATTTATA  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGTTTGTGCCTTACCAGCTGAGCGCAGAAGCCCTTACTATTTATA  848

seq1  AAGATACAGATTGCCACACCCACTCCAGGAGTGACTTGAGTGACAGGTCT  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACAGATTGCCACACCCACTCCAGGAGTGACTTGAGTGACAGGTCT  898

seq1  AGAAGCTTGGCCGCAGTCCCGAGGCAAAAAGTTCACAGAAACTTAGTCAC  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTGGCCGCAGTCCCGAGGCAAAAAGTTCACAGAAACTTAGTCAC  948

seq1  CTGGAACCAGGGCATCCTGTATAACGAGTGCTCCAAATCTGTCCTTGCTT  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACCAGGGCATCCTGTATAACGAGTGCTCCAAATCTGTCCTTGCTT  998

seq1  TAGTAGAGAACGGATCCGTGTGCTTTCCTTCAGTATTGTTTTATTATAAG  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGAGAACGGATCCGTGTGCTTTCCTTCAGTATTGTTTTATTATAAG  1048

seq1  TGCCTCTAAGGATTGATTTTTTTTGACATATAGCTAAGTTAGATTAGCCT  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTAAGGATTGATTTTTTTTGACATATAGCTAAGTTAGATTAGCCT  1098

seq1  CCTCCAATGTCCCTATGTCCTAGGCAGTCCTTGAGCCAATCCTGGGCTTG  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAATGTCCCTATGTCCTAGGCAGTCCTTGAGCCAATCCTGGGCTTG  1148

seq1  GAATTC  1137
      ||||||
seq2  GAATTC  1154