BAC Information

Click to search

BAC

Clone NameB6Ng01-277P12
Chromosome1 (Build37)
Map Location 162,347,768 - 162,496,534
singlet/doubletdoublet
Overlap geneRabgap1l
Upstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp
Downstream geneGpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277P12.bB6Ng01-277P12.g
ACCGA078341GA078342
length5671,135
definitionB6Ng01-277P12.b B6Ng01-277P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,347,768 - 162,348,334)(162,495,407 - 162,496,534)
sequence
gaattcaaagaactggaaggagtacaatgtcttacccctcctgcgtaact
cagtcatacccctgcttccccccttgctcttcactttcctccccaaagag
gaccgcacacatgctgggcagggtttgctacccactgcactatatactcc
cagctttaccacccccccaaccccccgcttgctaccattataggcacctt
ctctcttctctctctctctctctctctctctctctctctctctctctctc
cctccactccctccccctccctctctaatgtatgtgcatattttgcctgt
atgaattcctgggcactatttgcttacctggtacctacagaggccaaaag
aggttctcagttcattgaaactggagttaaaacaagtgctcttaactgtt
aggccatctctccagctggcatgagtatcttatgcaggaagtcattggtt
cacccacagccattacaatagagttatttttttatgtttggatctatgtt
cactccattttgaattcattggtgtgtatgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgaaaggatat
gaattcttatctaaagtgactgcattattgttttgagctttgtgcaaggt
actctgagctttctaggtgatctgtgtattgtaagtagtttatttattgg
gctaaagtgaatttgctggaggtattaatcatgactcgagtctcttgcct
acagttgtgctgcccacctcatgagagtgtggtttgacatcactatcctt
ttctcctgtgctttccggtcacactgtataaatagaaaagcttttgcaaa
gagtattttaggagactttcaagattacttaatattgctgtctatcttaa
ttgaatttttccttccagagttcacagtcactggacttacaaacgatttt
taaatatgcatcttaagggaggtgtataaccatcaggctgactgagtctt
ttaggtaatttttcttatactcaactgaaacgaacatctgagttctgact
atgatcatgtggggaattttgcatttctgtttcacctatgaacttgaaga
gaatcattgttttgtccagtatttgctaagtcttgagctcgtcttagagc
atctgatttagaagttgctctctagcttccctctgagtgaatggacttag
atattcattatattcttctttaaatggacttaaagctgaatgtaatgttt
ttgtatgtgatattctcagtaatagatgaatataaatctgttattttatt
ggtttatatatgtactattgtttattcagccaagaaattaaatcagatac
atttaaagttttatatatatatatatatcccattttaacatactgagttc
attttcaacaaatatattttaaatagctgcttaatttcatctttgtatga
cctttatgtttttcaaaaatgcaattttactttggaagatagaggcagga
gagccataagttttagatcagtctagactacacagcgagactgcttctaa
taaggcaagcaaagcaaaaaaagaaagaaaatatttaaccattcagcttt
acattgttcttgtagtttggctcattcatattccaggaggccattttagc
ttaaggtctgctttcaattgtagttactggaaagtggatggggattctgg
aataagttgggccctagtagggaggtcttaggtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_162347768_162348334
seq2: B6Ng01-277P12.b_47_613

seq1  GAATTCAAAGAACTGGAAGGAGTACAATGTCTTACCCCTCCTGCGTAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAACTGGAAGGAGTACAATGTCTTACCCCTCCTGCGTAACT  50

seq1  CAGTCATACCCCTGCTTCCCCCCTTGCTCTTCACTTTCCTCCCCAAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATACCCCTGCTTCCCCCCTTGCTCTTCACTTTCCTCCCCAAAGAG  100

seq1  GACCGCACACATGCTGGGCAGGGTTTGCTACCCACTGCACTATATACTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGCACACATGCTGGGCAGGGTTTGCTACCCACTGCACTATATACTCC  150

seq1  CAGCTTTACCACCCCCCCAACCCCCCGCTTGCTACCATTATAGGCACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTACCACCCCCCCAACCCCCCGCTTGCTACCATTATAGGCACCTT  200

seq1  CTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  250

seq1  CCTCCACTCCCTCCCCCTCCCTCTCTAATGTATGTGCATATTTTGCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACTCCCTCCCCCTCCCTCTCTAATGTATGTGCATATTTTGCCTGT  300

seq1  ATGAATTCCTGGGCACTATTTGCTTACCTGGTACCTACAGAGGCCAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTCCTGGGCACTATTTGCTTACCTGGTACCTACAGAGGCCAAAAG  350

seq1  AGGTTCTCAGTTCATTGAAACTGGAGTTAAAACAAGTGCTCTTAACTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTCAGTTCATTGAAACTGGAGTTAAAACAAGTGCTCTTAACTGTT  400

seq1  AGGCCATCTCTCCAGCTGGCATGAGTATCTTATGCAGGAAGTCATTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATCTCTCCAGCTGGCATGAGTATCTTATGCAGGAAGTCATTGGTT  450

seq1  CACCCACAGCCATTACAATAGAGTTATTTTTTTATGTTTGGATCTATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACAGCCATTACAATAGAGTTATTTTTTTATGTTTGGATCTATGTT  500

seq1  CACTCCATTTTGAATTCATTGGTGTGTATGTGTGTGTGTGTGTGTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCATTTTGAATTCATTGGTGTGTATGTGTGTGTGTGTGTGTGTGTG  550

seq1  TGTATCTCACAGGATAT  567
      ||| | | | |||||||
seq2  TGTGTGTGAAAGGATAT  567

seq1: chr1_162495407_162496534
seq2: B6Ng01-277P12.g_67_1201 (reverse)

seq1  GCACCTAAGACCT-CCTACTA-GACCCAATTTA-TCCAG-ATTCCCAT-C  45
      ||||||||||||| ||||||| | ||||| ||| ||||| || ||||| |
seq2  GCACCTAAGACCTCCCTACTAGGGCCCAACTTATTCCAGAATCCCCATCC  50

seq1  ACTTTCCAGTACTTACAATTGGAAAGCAGGCCTT-AGCTAAATGGGCCTC  94
      |||||||||||  ||||||| |||||||| |||| |||||||  ||||||
seq2  ACTTTCCAGTAACTACAATT-GAAAGCAGACCTTAAGCTAAAATGGCCTC  99

seq1  CTGGAATATG-ATGAGCCAAACTAC-AGAACAATGTAAAGCTGAATGTTT  142
      |||||||||| |||||||||||||| ||||||||||||||||||||| ||
seq2  CTGGAATATGAATGAGCCAAACTACAAGAACAATGTAAAGCTGAATGGTT  149

seq1  AAATATTTTCTTTCTTTTTTTGCTTTGCTTTGCTTATTAGAAGCAGTCTC  192
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  AAATATTTTCTTTCTTTTTTTGCTTTGCTTGCCTTATTAGAAGCAGTCTC  199

seq1  GCTGTGTAGTCTAGACTGATCTAAAACTTATGGCTCTCCTGCCTCTATCT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTAGTCTAGACTGATCTAAAACTTATGGCTCTCCTGCCTCTATCT  249

seq1  TCCAAAGTAAAATTGCATTTTTGAAAAACATAAAGGTCATACAAAGATGA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGTAAAATTGCATTTTTGAAAAACATAAAGGTCATACAAAGATGA  299

seq1  AATTAAGCAGCTATTTAAAATATATTTGTTGAAAATGAACTCAGTATGTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGCAGCTATTTAAAATATATTTGTTGAAAATGAACTCAGTATGTT  349

seq1  AAAATGGGATATATATATATATATAAAACTTTAAATGTATCTGATTTAAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGATATATATATATATATAAAACTTTAAATGTATCTGATTTAAT  399

seq1  TTCTTGGCTGAATAAACAATAGTACATATATAAACCAATAAAATAACAGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGCTGAATAAACAATAGTACATATATAAACCAATAAAATAACAGA  449

seq1  TTTATATTCATCTATTACTGAGAATATCACATACAAAAACATTACATTCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTCATCTATTACTGAGAATATCACATACAAAAACATTACATTCA  499

seq1  GCTTTAAGTCCATTTAAAGAAGAATATAATGAATATCTAAGTCCATTCAC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAGTCCATTTAAAGAAGAATATAATGAATATCTAAGTCCATTCAC  549

seq1  TCAGAGGGAAGCTAGAGAGCAACTTCTAAATCAGATGCTCTAAGACGAGC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGGAAGCTAGAGAGCAACTTCTAAATCAGATGCTCTAAGACGAGC  599

seq1  TCAAGACTTAGCAAATACTGGACAAAACAATGATTCTCTTCAAGTTCATA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACTTAGCAAATACTGGACAAAACAATGATTCTCTTCAAGTTCATA  649

seq1  GGTGAAACAGAAATGCAAAATTCCCCACATGATCATAGTCAGAACTCAGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAACAGAAATGCAAAATTCCCCACATGATCATAGTCAGAACTCAGA  699

seq1  TGTTCGTTTCAGTTGAGTATAAGAAAAATTACCTAAAAGACTCAGTCAGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGTTTCAGTTGAGTATAAGAAAAATTACCTAAAAGACTCAGTCAGC  749

seq1  CTGATGGTTATACACCTCCCTTAAGATGCATATTTAAAAATCGTTTGTAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGTTATACACCTCCCTTAAGATGCATATTTAAAAATCGTTTGTAA  799

seq1  GTCCAGTGACTGTGAACTCTGGAAGGAAAAATTCAATTAAGATAGACAGC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTGACTGTGAACTCTGGAAGGAAAAATTCAATTAAGATAGACAGC  849

seq1  AATATTAAGTAATCTTGAAAGTCTCCTAAAATACTCTTTGCAAAAGCTTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAGTAATCTTGAAAGTCTCCTAAAATACTCTTTGCAAAAGCTTT  899

seq1  TCTATTTATACAGTGTGACCGGAAAGCACAGGAGAAAAGGATAGTGATGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTATACAGTGTGACCGGAAAGCACAGGAGAAAAGGATAGTGATGT  949

seq1  CAAACCACACTCTCATGAGGTGGGCAGCACAACTGTAGGCAAGAGACTCG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCACACTCTCATGAGGTGGGCAGCACAACTGTAGGCAAGAGACTCG  999

seq1  AGTCATGATTAATACCTCCAGCAAATTCACTTTAGCCCAATAAATAAACT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGATTAATACCTCCAGCAAATTCACTTTAGCCCAATAAATAAACT  1049

seq1  ACTTACAATACACAGATCACCTAGAAAGCTCAGAGTACCTTGCACAAAGC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACAATACACAGATCACCTAGAAAGCTCAGAGTACCTTGCACAAAGC  1099

seq1  TCAAAACAATAATGCAGTCACTTTAGATAAGAATTC  1128
      ||||||||||||||||||||||||||||||||||||
seq2  TCAAAACAATAATGCAGTCACTTTAGATAAGAATTC  1135