BAC Information

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BAC

Clone NameB6Ng01-278H17
Chromosome1 (Build37)
Map Location 172,508,167 - 172,682,327
singlet/doubletdoublet
Overlap geneLOC100040002, LOC640532, Olfml2b, Atf6
Upstream geneRgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap
Downstream geneDusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278H17.bB6Ng01-278H17.g
ACCGA078714GA078715
length1,154691
definitionB6Ng01-278H17.b B6Ng01-278H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,508,167 - 172,509,335)(172,681,746 - 172,682,327)
sequence
gaattctaggaagccagggctaccgagaaaaaccctgtatcaaaaaacaa
caacaaatgaacactgatcccttctagaggacccaggttctcctcccagc
acctccatggcagctcacaactagggaatcaatgctctagttttagatcc
tacaagtaccaggcatacacagatgtacataaaattataagagccatgct
gaccatcccgctcctgacaagggtacccaagaaaacacgctgagaaggga
attcaaagacattcaatacctgtttcattcagtctttggcccatttacca
gcaagcactgttctatgcaatgggaatgcaccatccagggtggggtaggg
cacagaaacaaaacaactactgacataaaaagccttgagtgccagcaaga
cagtatagcaggcagtcaccgatgaccgagctcaaccccggatcccatgt
aaacatggaaagggggaaaaaaaagacacctccacaatgctgtcctcctc
actcaaggaaccaaacacctcccaacacaaatatggaaagatgaaacaga
tgctaatctcaaagtcccagcaaggaaggtcacagtgaaatgtctcaacc
attatgaaaatgcttgaaacaaacgaaaaatacaaaatggcagcaaacac
aaacaaacaggcagacagacaaataaataaaagacaaatgttacaatgcc
ccaggctagccccatactatgaattacaatctctaggatggctcaactat
gttagtcagctttctgttgatgttacaaaatagacaaaagagacaatcaa
ccgtgtaacactttgtcttgactctgtttcagaggctttgattggagatg
gataaggaaacatctgggtccatagtgtagaaagggatctacacacatgt
gctgttattaaacttagcacatacacagtgacagtagccttcttctgttc
cgactctccagttaacggggacctggaggagtacaggatcgacacctaca
ggcactaactagactagtgaccccaaaacactgacccaacacgcagaaat
gagaaaaagtaccagaatgacaaagggacaagactcgcaagttctaaacc
gtgcctgacccttgattgggaggattggatgaccgcattgttcagctcct
gcaa
gaattcagtggatataggccacgaatgaaatgttaaaaggtcgttgttgt
cagtgttggcctgatacgcaaacctctggttcccagcgggtcatcccaat
gcaggagagctgcttggtgctgtacttgaagcctttgctgactgagaatt
ctcattcatcgggagtagctattctaggtattccttcctatcacacacag
acgcccacactgagccggagtttcctcgtataggagaagctgtttcatct
actatgacatgaactggctaagaggagacttgaacactgtgtgtttcatc
caattattaataattatttcacttgccagcttttgatgtaaacatcaggg
ctttgtttttaagactaagtctggtgctcactttggcagcacatatacta
aaattggaacgatacaaataatatgagcctggcccctgcgcaaggatgac
acacaaattcgtgaattgttccatatttttaaggagctaaaggggtcggc
aaccctatagaaggatcaataatatgaactaaccaatactcccccagaac
tgtgtctctagctgcctatgtagcacagaatgacctagttggccatcaat
gagaggagaggcccttggtcttgcgaagatcatatgccccaatacaagag
aatgccagagccaggaagcgggagtgggtgggttggggagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_172508167_172509335
seq2: B6Ng01-278H17.b_41_1194

seq1  GAATTCTAGGACAGCCAGGGCTACAGAGAAAAACCCTGTATCAAAAAACA  50
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  GAATTCTAGGA-AGCCAGGGCTACCGAGAAAAACCCTGTATCAAAAAACA  49

seq1  ACAACAAATGAACACTGATCCCTTCTAGAGGACCCAGGTTCTCCTCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAATGAACACTGATCCCTTCTAGAGGACCCAGGTTCTCCTCCCAG  99

seq1  CACCTCCATGGCAGCTCACAACTAGGGAATCAATGCTCTAGTTTTAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCATGGCAGCTCACAACTAGGGAATCAATGCTCTAGTTTTAGATC  149

seq1  CTACAAGTACCAGGCATACACAGATGTACATAAAATTATAAGAGCCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGTACCAGGCATACACAGATGTACATAAAATTATAAGAGCCATGC  199

seq1  TGACGATCCCGCTCCTGACAAGGGTACCCAAGAAAACACGCTGAGAAGGG  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATCCCGCTCCTGACAAGGGTACCCAAGAAAACACGCTGAGAAGGG  249

seq1  AATTCAGAGACATTCAATACCTGTTTCATTCAGTCTTTGGCCCATTTACC  300
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAAGACATTCAATACCTGTTTCATTCAGTCTTTGGCCCATTTACC  299

seq1  AGCAAGCACTGTTCTATGCAATGGGAATGCACCATCCAGGGTGGGGTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCACTGTTCTATGCAATGGGAATGCACCATCCAGGGTGGGGTAGG  349

seq1  GCACAGAAACAAAACAACTACTGTCATAAAAAGCCTTGAGTGCCAGCAAG  400
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCACAGAAACAAAACAACTACTGACATAAAAAGCCTTGAGTGCCAGCAAG  399

seq1  ACAGTATAGCAGGCAGTCACCGATGACCGAGCTCAACCCCGGATCCCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATAGCAGGCAGTCACCGATGACCGAGCTCAACCCCGGATCCCATG  449

seq1  TAAACATGGAAAGGGGGAAAAAAAAGACACCTCCACAATGCTGTCCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATGGAAAGGGGGAAAAAAAAGACACCTCCACAATGCTGTCCTCCT  499

seq1  CACTCAAGGAACCAAACACCTCCCAACACAAATATGGAAAGATGAAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAAGGAACCAAACACCTCCCAACACAAATATGGAAAGATGAAACAG  549

seq1  ATGCTAATCTCAAAGTCCCAGCAAGGAAGGTCACAGTGAAATGTCTCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAATCTCAAAGTCCCAGCAAGGAAGGTCACAGTGAAATGTCTCAAC  599

seq1  CATTATGAAAATGCTTGAAACAAACGAAAAATACAAAATGGCAGCAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGAAAATGCTTGAAACAAACGAAAAATACAAAATGGCAGCAAACA  649

seq1  CAAACAAACAGGCAGACAGACAAATAAATAAAAGACAAATGTTACAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAGGCAGACAGACAAATAAATAAAAGACAAATGTTACAATGC  699

seq1  CCCAGGCTAGCCCCATACTATGAATTACAATCTCTAGGATGGCTCAGCTA  750
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCCAGGCTAGCCCCATACTATGAATTACAATCTCTAGGATGGCTCAACTA  749

seq1  TGTTAGTCAGCTTTCTGTTGATGTTACAAAATAGACAAAAGAGACAATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTCAGCTTTCTGTTGATGTTACAAAATAGACAAAAGAGACAATCA  799

seq1  ACCGTGTAACACTTTGTCTTGACTCTGTTTCAGAGGCTTTGATTGGAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGTAACACTTTGTCTTGACTCTGTTTCAGAGGCTTTGATTGGAGAT  849

seq1  GGATAAGGAAACATCT-GGTCCATAGTGTAGAAAGGGATCTACACACATG  899
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGATAAGGAAACATCTGGGTCCATAGTGTAGAAAGGGATCTACACACATG  899

seq1  TGCTGTTATT-AACTTAGCACATACACAGTGACAGTAG-CTTC-TCTGTT  946
      |||||||||| ||||||||||||||||||||||||||| |||| ||||||
seq2  TGCTGTTATTAAACTTAGCACATACACAGTGACAGTAGCCTTCTTCTGTT  949

seq1  CCGACTCTCCAGTTAAGGGGGAACCTGGAGGAGTACAGGATCGACACCCA  996
      |||||||||||||||| |||| |||||||||||||||||||||||||| |
seq2  CCGACTCTCCAGTTAACGGGG-ACCTGGAGGAGTACAGGATCGACACCTA  998

seq1  CAGGCACTAACTAGACTAGTGACCCCAAAACACCTGAGCCCAAACACGCA  1046
      |||||||||||||||||||||||||||||||| ||||  || ||||||||
seq2  CAGGCACTAACTAGACTAGTGACCCCAAAACA-CTGA--CCCAACACGCA  1045

seq1  GAAAATGAGAAAAAGGTACCAAGGATGACAAAAGGGACAAAGACATCGCA  1096
      | |||||||||||| ||||| || ||||| |||||||| ||||| |||||
seq2  G-AAATGAGAAAAA-GTACC-AGAATGAC-AAAGGGAC-AAGAC-TCGCA  1089

seq1  AGTCTTAAAACCGTGGCTGACCCCTTGATGGGGAGGAGTTTTGGAATGAC  1146
      ||| |  |||||||| |||| |||||||| |||||||   |||| |||||
seq2  AGT-TCTAAACCGTGCCTGA-CCCTTGATTGGGAGGA---TTGG-ATGAC  1133

seq1  CGCCTTGGTCCAGCTCCCTGCAA  1169
      ||| || || ||||| |||||||
seq2  CGCATT-GTTCAGCT-CCTGCAA  1154

seq1: chr1_172681746_172682327
seq2: B6Ng01-278H17.g_67_648 (reverse)

seq1  CATTCTCTGCTACATATGCAGCTAGAGACACAGTTCTGGGGGAGTACTGG  50
      |||||| ||||||||| ||||||||||||||||||||||||||||| |||
seq2  CATTCTGTGCTACATAGGCAGCTAGAGACACAGTTCTGGGGGAGTATTGG  50

seq1  TTAGTTCATATTATTGATCCTTCTATAGGGTTGCCGACCCCTTTAGCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCATATTATTGATCCTTCTATAGGGTTGCCGACCCCTTTAGCTCC  100

seq1  TTAAAAATATGGAACAATTCACGAATTTGTGTGTCATCCTTGCGCAGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATATGGAACAATTCACGAATTTGTGTGTCATCCTTGCGCAGGGG  150

seq1  CCATGCTAATATTCTCTGTATCGTTCCAATTTTAGTATATGTGCTGCCAA  200
      ||| ||| ||||| | ||||||||||||||||||||||||||||||||||
seq2  CCAGGCTCATATTATTTGTATCGTTCCAATTTTAGTATATGTGCTGCCAA  200

seq1  AGTGAGCACCAGACTTAGTCTTAAAAACAAAGCCCTGATGTTTACATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCACCAGACTTAGTCTTAAAAACAAAGCCCTGATGTTTACATCAA  250

seq1  AAGCTGGCAAGTGAAATAATTATTAATAATTGGATGAAACACACAGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGCAAGTGAAATAATTATTAATAATTGGATGAAACACACAGTGTT  300

seq1  CAAGTCTCCTCTTAGCCAGTTCATGTCATACTAGATGAAACAGCTTCTCC  350
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAAGTCTCCTCTTAGCCAGTTCATGTCATAGTAGATGAAACAGCTTCTCC  350

seq1  TATATGAGGAAACTCCGGCTCAGTGTGGGCGTCTGTCTGTGATAGGAAGG  400
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  TATACGAGGAAACTCCGGCTCAGTGTGGGCGTCTGTGTGTGATAGGAAGG  400

seq1  AATACCTAGAATAGCTACTCCCGATGAATGAGAATTCTCAGTCAGCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTAGAATAGCTACTCCCGATGAATGAGAATTCTCAGTCAGCAAAG  450

seq1  GCTTCAAGTACAGCACCAAGCAGCTCTCCTGCATTGGGATGACCCGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAAGTACAGCACCAAGCAGCTCTCCTGCATTGGGATGACCCGCTGG  500

seq1  GAACCAGAGGTTTGCGTATCAGGCCAACACTGACAACAACGACCTCTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAACCAGAGGTTTGCGTATCAGGCCAACACTGACAACAACGACCTTTTAA  550

seq1  CATTTCATACGTGGCCTATATCCACTGAATTC  582
      |||||||| |||||||||||||||||||||||
seq2  CATTTCATTCGTGGCCTATATCCACTGAATTC  582