BAC Information

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BAC

Clone NameB6Ng01-278J05
Chromosome1 (Build37)
Map Location 10,793,972 - 10,910,131
singlet/doubletdoublet
Overlap geneLOC433271
Upstream geneSgk3, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1, Cpa6
Downstream geneC030045D06Rik, A830018L16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278J05.bB6Ng01-278J05.g
ACCGA078784GA078785
length2131,183
definitionB6Ng01-278J05.b B6Ng01-278J05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,793,972 - 10,794,184)(10,908,947 - 10,910,131)
sequence
attcacattaaactgattgatatgatgtataggcaatgaacatggtacat
gtaagatggcagcactatatatatcaagagttcactgtgatatttgaaca
taccagatataaatattttgttctttactgtttgaaaaaaggctattata
actaaagtacacatttaaaaaatagtgacttgtagatattatatttacat
atatggtgtgtgt
gaattcaacagaagttgcttagttcaatatgaatgattcatttgggattc
acatctcagaattctctataaaagcagatgtatgtgcacatagtgtgcac
acaaaaagagactcattctaaagaattgactcttgtaattatggaagctg
aaaagtttcatgaagcacagttggagagtggaagatccagaagagtgata
gtttgtttccaggccaaaaatcttctttgtttaaaaccctaaaagaactc
ctatttaaattccagttcaaaggcaggcaaagattgacatctcacctcaa
ataatcagataggagacaaagggccttaccggagggtacactcattcttc
tgtttatgtcttcggaggaccacatgctttccttgtatgccaattcaaaa
gtttatctcatctaaaaccagcctcattgaaacactgcaataatacctca
ttaactagctatgtacctcacagctcagccaaactaacaaagctgaccat
cacaacttgctaattaaaaattgtcagtttaattaaataatcatgagaca
gagaccttaaacttcttattttattaaaacatgtatgaatccattttcat
ctttcagtctgctgagatgaactcacagctttttctttgagggtgaagtg
gtgattgaagtcccagatggttttgcccacaaagctgtactcataattta
tcttcaacgtttcacaggctctgtttcctgagtgtgaaagaactcagacc
caattataagacaattaagagctaattttttttctagccttttgaagttc
atattctttagtatgttgtttggatgttccattttataggcaatttgctg
ttctgaagtatttagcttttcacagtgacatattttgtaggtatagtcaa
ctttttgcttggtaaagtgtagtgttgcactactacatgacacgtgtggg
tttaaatgtgatcgaagccagggtgtcatacagctcagctagtgaaattt
gattgtggtgcctgtgaggacgctgcagttgaatgaagatggggctccac
aagagatgaaggctagtggataaatcaggattcacttcaggagcactgct
agaagccacctcctaaacacacttggtccaaggcattaaacattaacatc
tgccgatcctcattataattctagagagtccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_10793972_10794184
seq2: B6Ng01-278J05.b_53_265

seq1  ATTCACATTAAACTGATTGATATGATGTATAGGCAATGAACATGGTACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACATTAAACTGATTGATATGATGTATAGGCAATGAACATGGTACAT  50

seq1  GTAAGATGGCAGCACTATATATATCAAGAGTTCACTGTGATATTTGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATGGCAGCACTATATATATCAAGAGTTCACTGTGATATTTGAACA  100

seq1  TACCAGATATAAATATTTTGTTCTTTACTGTTTGAAAAAAGGCTATTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGATATAAATATTTTGTTCTTTACTGTTTGAAAAAAGGCTATTATA  150

seq1  ACTAAAGTACACATTTAAAAAATAGTGACTTGTAGATATTATATTTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGTACACATTTAAAAAATAGTGACTTGTAGATATTATATTTACAT  200

seq1  ATATGGTGTGTGT  213
      |||||||||||||
seq2  ATATGGTGTGTGT  213

seq1: chr1_10908947_10910131
seq2: B6Ng01-278J05.g_67_1249 (reverse)

seq1  TGGGA--CTCTTGAATTAATTTGAGG-TCGGCAGATGTTAATGTTTAATG  47
      |||||  |||| ||||||   ||||| |||||||||||||||||||||||
seq2  TGGGACTCTCTAGAATTATAATGAGGATCGGCAGATGTTAATGTTTAATG  50

seq1  CCTGTGACACAGTTGTTTTAGGA-GTGGCTTTCTAAGCAGTGCTCCTTGA  96
      |||  |||  |||   ||||||| ||||| |||| ||||||||||| |||
seq2  CCTTGGACCAAGTGTGTTTAGGAGGTGGC-TTCT-AGCAGTGCTCC-TGA  97

seq1  AGTGATTCCTGATTAATCAACTAGCTTTCATCTTCCTGT-GAGCCCCATT  145
      ||||| |||||||| ||| |||||| |||||| || ||| |||||||| |
seq2  AGTGAATCCTGATTTATCCACTAGCCTTCATC-TCTTGTGGAGCCCCA-T  145

seq1  CTTCCATCCACTGCAGCGTTCTTCACAGGCACCACAATC-AATTTCACTA  194
      ||||  || ||||||||| || ||||||||||||||||| ||||||||||
seq2  CTTCATTCAACTGCAGCG-TCCTCACAGGCACCACAATCAAATTTCACTA  194

seq1  GCTGAGCTGTATGACACCCTGGCTTCGATCACATTTAAACCCACACGTTG  244
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCTGAGCTGTATGACACCCTGGCTTCGATCACATTTAAACCCACACG-TG  243

seq1  TCATTGTAGTAGTGCAACACCTACACTTTACCAAGCAAAAAGTTGACTAT  294
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCA-TGTAGTAGTGCAACA-CTACACTTTACCAAGCAAAAAGTTGACTAT  291

seq1  ACCTACAAAATATTGTCACTGTG-AAAGCTAAATACTTCAGAACAGCAAA  343
      |||||||||||| |||||||||| ||||||||||||||||||||||||||
seq2  ACCTACAAAATA-TGTCACTGTGAAAAGCTAAATACTTCAGAACAGCAAA  340

seq1  TTGCCTATAAAATGGAACATCCAAACAACATACTAAAGAATATGAACTTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTATAAAATGGAACATCCAAACAACATACTAAAGAATATGAACTTC  390

seq1  AAAAGGCTAG-AAAAAAATTAGCTCTTAATTGTCTTATAATTGGGTCTGA  442
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCTAGAAAAAAAATTAGCTCTTAATTGTCTTATAATTGGGTCTGA  440

seq1  GTTCTTTCACACTCAGGAAACAGAGCCTGTGAAACGTTGAAGATAAATTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTCACACTCAGGAAACAGAGCCTGTGAAACGTTGAAGATAAATTA  490

seq1  TGAGTACAGCTTTGTGGGCAAAACCATCTGGGACTTCAATCACCACTTCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACAGCTTTGTGGGCAAAACCATCTGGGACTTCAATCACCACTTCA  540

seq1  CCCTCAAAGAAAAAGCTGTGAGTTCATCTCAGCAGACTGAAAGATGAAAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAAGAAAAAGCTGTGAGTTCATCTCAGCAGACTGAAAGATGAAAA  590

seq1  TGGATTCATACATGTTTTAATAAAATAAGAAGTTTAAGGTCTCTGTCTCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCATACATGTTTTAATAAAATAAGAAGTTTAAGGTCTCTGTCTCA  640

seq1  TGATTATTTAATTAAACTGACAATTTTTAATTAGCAAGTTGTGATGGTCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATTTAATTAAACTGACAATTTTTAATTAGCAAGTTGTGATGGTCA  690

seq1  GCTTTGTTAGTTTGGCTGAGCTGTGAGGTACATAGCTAGTTAATGAGGTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTTAGTTTGGCTGAGCTGTGAGGTACATAGCTAGTTAATGAGGTA  740

seq1  TTATTGCAGTGTTTCAATGAGGCTGGTTTTAGATGAGATAAACTTTTGAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCAGTGTTTCAATGAGGCTGGTTTTAGATGAGATAAACTTTTGAA  790

seq1  TTGGCATACAAGGAAAGCATGTGGTCCTCCGAAGACATAAACAGAAGAAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATACAAGGAAAGCATGTGGTCCTCCGAAGACATAAACAGAAGAAT  840

seq1  GAGTGTACCCTCCGGTAAGGCCCTTTGTCTCCTATCTGATTATTTGAGGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTACCCTCCGGTAAGGCCCTTTGTCTCCTATCTGATTATTTGAGGT  890

seq1  GAGATGTCAATCTTTGCCTGCCTTTGAACTGGAATTTAAATAGGAGTTCT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTCAATCTTTGCCTGCCTTTGAACTGGAATTTAAATAGGAGTTCT  940

seq1  TTTAGGGTTTTAAACAAAGAAGATTTTTGGCCTGGAAACAAACTATCACT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGTTTTAAACAAAGAAGATTTTTGGCCTGGAAACAAACTATCACT  990

seq1  CTTCTGGATCTTCCACTCTCCAACTGTGCTTCATGAAACTTTTCAGCTTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGATCTTCCACTCTCCAACTGTGCTTCATGAAACTTTTCAGCTTC  1040

seq1  CATAATTACAAGAGTCAATTCTTTAGAATGAGTCTCTTTTTGTGTGCACA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTACAAGAGTCAATTCTTTAGAATGAGTCTCTTTTTGTGTGCACA  1090

seq1  CTATGTGCACATACATCTGCTTTTATAGAGAATTCTGAGATGTGAATCCC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGCACATACATCTGCTTTTATAGAGAATTCTGAGATGTGAATCCC  1140

seq1  AAATGAATCATTCATATTGAACTAAGCAACTTCTGTTGAATTC  1185
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATCATTCATATTGAACTAAGCAACTTCTGTTGAATTC  1183