BAC Information

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BAC

Clone NameB6Ng01-278O14
Chromosome1 (Build37)
Map Location 190,847,305 - 190,999,215
singlet/doubletdoublet
Overlap genenone
Upstream geneEsrrg, Ush2a, Kctd3
Downstream geneKcnk2, LOC100042424, LOC100039307, Cenpf, Ptpn14, LOC100042438, Smyd2, Prox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278O14.bB6Ng01-278O14.g
ACCGA079031GA079032
length8911,059
definitionB6Ng01-278O14.b B6Ng01-278O14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(190,847,305 - 190,848,193)(190,998,149 - 190,999,215)
sequence
gaattccttagcttggccactagatggcaacattctttcaaaattgtttt
atatctacctttaacttattatattggatttttaattaccacagaggggc
agagtttgatggcattttcactccttccctcacccctgcaccatctccca
tgcctgtgccatgtgtgccccacccatcccaggcccctcccttttgctat
ttcatcacaagggtccctttccctttttctagcttagatgctaggatcca
catacgagaaagaatatgcagtttttgtctctctgagcccaagttggctc
atgaatatacttttcaaacctcatggaataaaactagcaaggattaccac
cccctcccaacatacgcatgcacaaatacataagaacttggagattgtca
atgcatttttgaatgaacactgggtgagtcattgaagaaattaaagagac
caattaaacattcttagaatcaagtgggaatgaggtcactgcctaccaga
aactctgggacacagccaaggcagtcaagaacaaagtttgtaactataac
cacttttctcaaatattagagagctcaaatgtaaataaaccaatgagctc
aaataagtaccccaaagctccagaaaaaaaaaatgaagccaaacccaagc
caacagtagacatcaatcatgatttagaccaaacaaaacagaaagagaaa
gtagagcttctagaccaaccaaatgagaagttggattttggaaagattaa
aagaatttcggattgccaactccctagctgagagggggcaggcagagaga
gagagagagagagagagagagagagagagagagagagaaatagagaatag
atgattgatagaaagataaatggatagatggatgatagata

gaattcacagaggagggcctagacagaaatatcctggaagtgtatgagga
gcgcccaggccgcgcccttgctagtgctctggcctttcaggaggtagcct
tcttaagacggaaggatccagactgtgaaagactggcaccgaatgctctc
ccgccatgtcagtacctcctatcggtaattcccacctctccactttcagg
gcatcttttgtgaatctcctaagtttatgttagccctcaggtacctctac
ccttttctttttctagtcctagtagaagacattgtgttttctgcagtagt
ttcccagccccagtgtcattcttttctctgcatttcatggaagttgttag
gcagatggggtcagataagctggcttcatcagtgtaggttcaatcttcgt
tccaatctaagtgtccgataggaggtgctttgttttcctagaagataaag
taggcaggtgcctctctgtgctttatgtgagcaaccatatgtgactgttg
ctaaatatagaagttcttatgaagtataagattcggcagaaaatgcaagg
attttctggaacctaaattattgcagggagctttgaaagattcagcggtc
atttatcccttcggacatatcttaagtgtttcttgaataaattatttaag
aagaacaatttatgaaaataatgtgagtaacatgctgttggctgtatgaa
tctttatgtcacggatcataatttcatatgcagtagaaatcgtcacatag
atttttttgccttaaatatattgtttcttagatattttgttctttttata
tcatcaattattcttgttttcctaaatcctatcatgaacataacaagggt
acagataataaatgtttgtatttgggctaagtgcacacttttcggctctt
gtgctgctcagaaaacaaaggttttgaggcaaacacactcgcccctcttc
atggttacattgttgtgcctgctcacagacaacgtagttagcatgataag
ccctggaaaacaaagctattgtttcttctgtgtgagaagtgcagggttct
tagcttaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_190847305_190848193
seq2: B6Ng01-278O14.b_49_939

seq1  GAATTCCTTAGCTTGGCCACTAGATGGCAACATTCTTTCAAAATTGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGCTTGGCCACTAGATGGCAACATTCTTTCAAAATTGTTTT  50

seq1  ATATCTACCTTTAACTTATTATATTGGATTTTTAATTACCACAGAGGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTACCTTTAACTTATTATATTGGATTTTTAATTACCACAGAGGGGC  100

seq1  AGAGTTTGATGGCATTTTCACTCCTTCCCTCACCCCTGCACCATCTCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGATGGCATTTTCACTCCTTCCCTCACCCCTGCACCATCTCCCA  150

seq1  TGCCTGTGCCATGTGTGCCCCACCCATCCCAGGCCCCTCCCTTTTGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTGCCATGTGTGCCCCACCCATCCCAGGCCCCTCCCTTTTGCTAT  200

seq1  TTCATCACAAGGGTCCCTTTCCCTTTTTCTAGCTTAGATGCTAGGATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCACAAGGGTCCCTTTCCCTTTTTCTAGCTTAGATGCTAGGATCCA  250

seq1  CATACGAGAAAGAATATGCAGTTTTTGTCTCTCTGAGCCCAAGTTGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGAGAAAGAATATGCAGTTTTTGTCTCTCTGAGCCCAAGTTGGCTC  300

seq1  ATGAATATACTTTTCAAACCTCATGGAATAAAACTAGCAAGGATTACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATACTTTTCAAACCTCATGGAATAAAACTAGCAAGGATTACCAC  350

seq1  CCCCTCCCAACATACGCATGCACAAATACATAAGAACTTGGAGATTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCAACATACGCATGCACAAATACATAAGAACTTGGAGATTGTCA  400

seq1  ATGCATTTTTGAATGAACACTGGGTGAGTCATTGAAGAAATTAAAGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTTTGAATGAACACTGGGTGAGTCATTGAAGAAATTAAAGAGAC  450

seq1  CAATTAAACATTCTTAGAATCAAGTGGGAATGAGGTCACTGCCTACCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAACATTCTTAGAATCAAGTGGGAATGAGGTCACTGCCTACCAGA  500

seq1  AACTCTGGGACACAGCCAAGGCAGTCAAGAACAAAGTTTGTAACTATAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGGGACACAGCCAAGGCAGTCAAGAACAAAGTTTGTAACTATAAC  550

seq1  CACTTTTCTCAAATATTAGAGAGCTCAAATGTAAATAAACCAATGAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTCTCAAATATTAGAGAGCTCAAATGTAAATAAACCAATGAGCTC  600

seq1  AAATAAGTACCCCAAAGCTCCAGAAAAAAAAAATGAAGCCAAACCCAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTACCCCAAAGCTCCAGAAAAAAAAAATGAAGCCAAACCCAAGC  650

seq1  CAACAGTAGACATCAATCATGATTTAGACCAAACAAAACAGAAAGAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTAGACATCAATCATGATTTAGACCAAACAAAACAGAAAGAGAAA  700

seq1  GTAGAGCTTCTAGACCAACCAAATGAGAAGTTGGATTTTGGAAAGATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCTTCTAGACCAACCAAATGAGAAGTTGGATTTTGGAAAGATTAA  750

seq1  AAGAATTTCGGATTGCCAACTCCCTAGCTGAGAGGGGGCAGGC--AGAGA  798
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  AAGAATTTCGGATTGCCAACTCCCTAGCTGAGAGGGGGCAGGCAGAGAGA  800

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATAGAGAATAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATAGAGAATAG  850

seq1  ATGATTGATAGAAAGATAAATGGATAGATGGATGATAGATA  889
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTGATAGAAAGATAAATGGATAGATGGATGATAGATA  891


seq1: chr1_190998149_190999215
seq2: B6Ng01-278O14.g_64_1122 (reverse)

seq1  CTTAAGCTTAGAAACCCTGGCCACTTCTCACACAAGGAAGAAACAATAGC  50
      |||||||| || |||||||  |||||||||||||  ||||||||||||||
seq2  CTTAAGCTAAG-AACCCTG--CACTTCTCACACA--GAAGAAACAATAGC  45

seq1  TTTGGTTTTTCCAGGGCTTATCATGCTAACTACGGTTTGTCTGTGAGCAG  100
      ||||  ||||||||||||||||||||||||||||  ||||||||||||||
seq2  TTTG--TTTTCCAGGGCTTATCATGCTAACTACG--TTGTCTGTGAGCAG  91

seq1  GCACAACAATGTAACCATGAAGAGGGGGCGAGTGTGTTTGCCTCAAAACC  150
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCACAACAATGTAACCATGAAGA-GGGGCGAGTGTGTTTGCCTCAAAACC  140

seq1  TTTG-TTTCTGAGCAGCACAAGAGCCGAAAAGTGTGCACTTAG-CCAAAT  198
      |||| |||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTGTTTTCTGAGCAGCACAAGAGCCGAAAAGTGTGCACTTAGCCCAAAT  190

seq1  ACAAACATTTATTATCTGTACCCTTGTTATGTTCATGATAGGATTTAGGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACATTTATTATCTGTACCCTTGTTATGTTCATGATAGGATTTAGGA  240

seq1  AAACAAGAATAATTGATGATATAAAAAGAACAAAATATCTAAGAAACAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGAATAATTGATGATATAAAAAGAACAAAATATCTAAGAAACAAT  290

seq1  ATATTTAAGGCAAAAAAATCTATGTGACGATTTCTACTGCATATGAAATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAGGCAAAAAAATCTATGTGACGATTTCTACTGCATATGAAATT  340

seq1  ATGATCCGTGACATAAAGATTCATACAGCCAACAGCATGTTACTCACATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCCGTGACATAAAGATTCATACAGCCAACAGCATGTTACTCACATT  390

seq1  ATTTTCATAAATTGTTCTTCTTAAATAATTTATTCAAGAAACACTTAAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATAAATTGTTCTTCTTAAATAATTTATTCAAGAAACACTTAAGA  440

seq1  TATGTCCGAAGGGATAAATGACCGCTGAATCTTTCAAAGCTCCCTGCAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCGAAGGGATAAATGACCGCTGAATCTTTCAAAGCTCCCTGCAAT  490

seq1  AATTTAGGTTCCAGAAAATCCTTGCATTTTCTGCCGAATCTTATACTTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGGTTCCAGAAAATCCTTGCATTTTCTGCCGAATCTTATACTTCA  540

seq1  TAAGAACTTCTATATTTAGCAACAGTCACATATGGTTGCTCACATAAAGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACTTCTATATTTAGCAACAGTCACATATGGTTGCTCACATAAAGC  590

seq1  ACAGAGAGGCACCTGCCTACTTTATCTTCTAGGAAAACAAAGCACCTCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGGCACCTGCCTACTTTATCTTCTAGGAAAACAAAGCACCTCCT  640

seq1  ATCGGACACTTAGATTGGAACGAAGATTGAACCTACACTGATGAAGCCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGACACTTAGATTGGAACGAAGATTGAACCTACACTGATGAAGCCAG  690

seq1  CTTATCTGACCCCATCTGCCTAACAACTTCCATGAAATGCAGAGAAAAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTGACCCCATCTGCCTAACAACTTCCATGAAATGCAGAGAAAAGA  740

seq1  ATGACACTGGGGCTGGGAAACTACTGCAGAAAACACAATGTCTTCTACTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACTGGGGCTGGGAAACTACTGCAGAAAACACAATGTCTTCTACTA  790

seq1  GGACTAGAAAAAGAAAAGGGTAGAGGTACCTGAGGGCTAACATAAACTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGAAAAAGAAAAGGGTAGAGGTACCTGAGGGCTAACATAAACTTA  840

seq1  GGAGATTCACAAAAGATGCCCTGAAAGTGGAGAGGTGGGAATTACCGATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTCACAAAAGATGCCCTGAAAGTGGAGAGGTGGGAATTACCGATA  890

seq1  GGAGGTACTGACATGGCGGGAGAGCATTCGGTGCCAGTCTTTCACAGTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTACTGACATGGCGGGAGAGCATTCGGTGCCAGTCTTTCACAGTCT  940

seq1  GGATCCTTCCGTCTTAAGAAGGCTACCTCCTGAAAGGCCAGAGCACTAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTTCCGTCTTAAGAAGGCTACCTCCTGAAAGGCCAGAGCACTAGC  990

seq1  AAGGGCGCGGCCTGGGCGCTCCTCATACACTTCCAGGATATTTCTGTCTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCGCGGCCTGGGCGCTCCTCATACACTTCCAGGATATTTCTGTCTA  1040

seq1  GGCCCTCCTCTGTGAATTC  1067
      |||||||||||||||||||
seq2  GGCCCTCCTCTGTGAATTC  1059


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