BAC Information

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BAC

Clone NameB6Ng01-279B08
Chromosome1 (Build37)
Map Location 196,195,851 - 196,196,865
singlet/doubletsinglet
Overlap genenone
Upstream geneCamk1g, LOC667208
Downstream geneEG623172, Plxna2, Cd34, Cd46, Crry, Cr2, EG635956, LOC623380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279B08.bB6Ng01-279B08.g
ACCGA079157GA079158
length1,1831,084
definitionB6Ng01-279B08.b B6Ng01-279B08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacataaaaccagagacactgaaacttatagaggagaaagtagg
gaaaagcctcgaagatatgggtacaggggataaattcctgaatagaacag
caatggcttgtgctgtaagatcgagaattgacaaatgggacctcataaaa
ttgcaaagcttctgcaaggcaaaagacaccgtcagcttgctttcttatag
aacccaagactaccagcccaggaatggcaccagccacaatgggccctctc
ttgatcactaattgagaaaatgctttacagctggatctcatggaggcatt
tcctcaagggaggcttctttctctgtaataactccaacctgtgtcaagtt
gacacacaaaaccagccagtgcaattgaccccttgtaaacttgacacaca
aacacatcgctattaagtctcaacccttactttcttattcatccccaaga
tctaaataactttaaatgtcccacagtctttgcaaattctcacatattaa
aatttcaatccctttaaaatatccaacgtctttttacaattaaaagtctc
ttaactgtgggctccactaaattattttcttccttcaagagggaaaaata
tcatgggaaagtcacaatcaaactcaaaatcaaactccaaccgtccatat
ctgggatccactcatgatcttgtgccatgagagcccctcatttcccctca
attctgatatctttactttgcctcattcctttctttcttcctttaatttc
ttgggggaacattttaacaatgtctgccagactttggatcactacagaat
tccagatctctctggttagtttcctctgcattgttggtctatcccatgga
ctactataggtaccctgttctcttctgacttgttgctctgccagactttt
agactcttctttcctgcagtcttagaaactcccaagaaaagagcccaagc
tcacagcttcccatctctctaaagttggtattcttattacttgttgttta
ctgtttgaacattgttagacttttgtttgtcttctgtggaggaagataaa
cttaagcatttttactctttcttattagagtaagaaaaacctttacgtaa
taatataatttttgtactttatttttagatatattcagttatatcagttc
tccatcatgttgccccttccaatcctttccaca

gaattctcacctgaggaataccgaatgtctgagaaacacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccccgagat
tccatctcacaccagtcagaatggctaagatgaaaaattgaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactccttcattgttggtg
ggattgcaggcttgtgcaaccactcagtctggtggttcctcagaaaattg
gacatggtactaccggaggatcctgcaatacctctcctgggcatatatcc
agaagatgttccaaccagtaagaaagaaacatgctccactatgtttatag
cagccttatttataatagccagaagctggaaagaacccagatacccccaa
cagaggaatggatacaaaaaatgtggtacatttacacaatggagtactac
tcagctattaaaatgaatgaatttatgaaattcctaggcaaatggttgga
cctggagggcattatcttgagtgaggtaacccaatcacagaagaactcaa
atgatatgtactcactgataagtggatattagcccagaaacttagaatac
ccaagatataagttacaatttgcaaaacacatggaactcaagaagagcga
agaccaaagtgtggaacctttccccttcttagaattgggaacaaaacacc
catggaagaagttacagagacaaagtttggagctgagacaaaaggatgga
ccatctagagattgccatatccagggatccatctcataatcatcctccaa
atgctgacacctttgcatacactagcaagattttgctgaaaggaccctga
tatagctgtctcttgtgagactatgcctgggcctagcaaacacataagtg
tatgctcacagtcagcttattggatggaatcacagggcctccctatggta
gagcttagagaaaatacccaaggagctgaaaggatctgcaccctatgggt
ggacaacattatgaactaactagtactcggagtccttgacctctagctgc
atggtatacaaagcatactaattggtcactcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_196195851_196196865
seq2: B6Ng01-279B08.b_222_1227

seq1  ACCGTCAGCTTGCTTTCTTATAGAACCCAAGACTACCAGCCCAGGAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCAGCTTGCTTTCTTATAGAACCCAAGACTACCAGCCCAGGAATGG  50

seq1  CACCAGCCACAATGGGCCCTCTCTTGATCACTAATTGAGAAAATGCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCCACAATGGGCCCTCTCTTGATCACTAATTGAGAAAATGCTTTA  100

seq1  CAGCTGGATCTCATGGAGGCATTTCCTCAAGGGAGGCTTCTTTCTCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGATCTCATGGAGGCATTTCCTCAAGGGAGGCTTCTTTCTCTGTA  150

seq1  ATAACTCCAACCTGTGTCAAGTTGACACACAAAACCAGCCAGTGCAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCCAACCTGTGTCAAGTTGACACACAAAACCAGCCAGTGCAATTG  200

seq1  ACCCCTTGTAAACTTGACACACAAACACATCGCTATTAAGTCTCAACCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTGTAAACTTGACACACAAACACATCGCTATTAAGTCTCAACCCT  250

seq1  TACTTTCTTATTCATCCCCAAGATCTAAATAACTTTAAATGTCCCACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTTATTCATCCCCAAGATCTAAATAACTTTAAATGTCCCACAGT  300

seq1  CTTTGCAAATTCTCACATATTAAAATTTCAATCCCTTTAAAATATCCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAAATTCTCACATATTAAAATTTCAATCCCTTTAAAATATCCAAC  350

seq1  GTCTTTTTACAATTAAAAGTCTCTTAACTGTGGGCTCCACTAAATTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTTACAATTAAAAGTCTCTTAACTGTGGGCTCCACTAAATTATTT  400

seq1  TCTTCCTTCAAGAGGGAAAAATATCATGGGAAAGTCACAATCAAACTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTCAAGAGGGAAAAATATCATGGGAAAGTCACAATCAAACTCAA  450

seq1  AATCAAACTCCAACCGTCCATATCTGGGATCCACTCATGATCTTGTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACTCCAACCGTCCATATCTGGGATCCACTCATGATCTTGTGCCA  500

seq1  TGAGAGCCCCTCATTTCCCCTCAATTCTGATATCTTTACTTTGCCTCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCCCCTCATTTCCCCTCAATTCTGATATCTTTACTTTGCCTCATT  550

seq1  CCTTTCTTTCTTCCTTTAATTTCTTGGGGGAACATTTTAACAATGTCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTTCTTCCTTTAATTTCTTGGGGGAACATTTTAACAATGTCTGC  600

seq1  CAGACTTTGGATCACTACAGAATTCCAGATCTCTCTGGTTAGTTTCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTTGGATCACTACAGAATTCCAGATCTCTCTGGTTAGTTTCCTCT  650

seq1  GCATTGTTGGTCTATCCCATGGACTACTATAGGTACCCTGTTCTCTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTTGGTCTATCCCATGGACTACTATAGGTACCCTGTTCTCTTCTG  700

seq1  ACTTGTTGCTCTGCCAGACTTTTAGACTCTTCTTTCCTGCAGTCTTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTGCTCTGCCAGACTTTTAGACTCTTCTTTCCTGCAGTCTTAGAA  750

seq1  ACTCCCAAGAAAAGAGCCCAAGCTCACAGCTTCCCATCTCTCTAAAGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAAGAAAAGAGCCCAAGCTCACAGCTTCCCATCTCTCTAAAGTTG  800

seq1  GTATTCTTTATTACTTGTTGTTTACTGTTTTGAACATTGTTAAGAACTTT  850
      |||||| |||||||||||||||||||| ||||||||||||||   |||||
seq2  GTATTC-TTATTACTTGTTGTTTACTG-TTTGAACATTGTTA--GACTTT  846

seq1  TGTTTGTCTTCTGTGGAGGAAGATAAACTTAAGCATTTTTACTCTTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTCTTCTGTGGAGGAAGATAAACTTAAGCATTTTTACTCTTTCTT  896

seq1  AATTAGAAGTAGAAAA--CCTTACGTAATAATATTAATTTTTGTAATTTT  948
       ||||||   ||||||  | ||||||||||||| ||||||||||| ||| 
seq2  -ATTAGAGTAAGAAAAACCTTTACGTAATAATA-TAATTTTTGTACTTT-  943

seq1  ATTTTTTAGATTATAATACAATTATATCATTTCTCCCTTCATGTTGCCCC  998
        |||||||| ||| || || |||||||| |||| || ||||||||||||
seq2  -ATTTTTAGA-TAT-ATTCAGTTATATCAGTTCT-CCATCATGTTGCCCC  989

seq1  CTCCAAACCCTTCCACA  1015
       ||||| || |||||||
seq2  TTCCAATCCTTTCCACA  1006


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