BAC Information

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BAC

Clone NameB6Ng01-280B17
Chromosome1 (Build37)
Map Location 57,153,556 - 57,219,556
singlet/doubletdoublet
Overlap genenone
Upstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869
Downstream geneLOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280B17.bB6Ng01-280B17.g
ACCGA079919GA079920
length9021,111
definitionB6Ng01-280B17.b B6Ng01-280B17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,218,654 - 57,219,556)(57,153,556 - 57,154,677)
sequence
gaattccttcccacctgaggaggtcagtttcttattccactcaggcctct
cgttgatttgatgaggcccacccacgttccagaggacaatcaccttactc
aagtttcactgatttaaatgttattctcatcaacaataacaaaaaaaaaa
aaaaaaaaagaaacctcacagaaacatccagaatttttgaccacatatct
ggcaatatggcccaaccaaattgatatgaagttaactattgcagtgctga
accttagccacaaaactgagagattggaaggagcgtctctctgcttttct
agcatctttggacaaccagatttccagtggggtagaaaccagcacgttca
cacacacacacacacacacacacacacacacacacacatgcatatatgca
aactgctcatagttcagactataagaaagcaggatacagttaacagagac
tgtgtgaactattcttttggagaggcagctccatatgatttgggttagca
ttcaaatagaaccagttatgaaataaccatatttttaagattccatttta
tacattgtgtgcatgtgaaaacaccaatggtgcatgtgcagaggtcagag
gacaacttgctggactttcttctctccttctgcgaagtggatgccaggga
tggaatcatactgtccttggtgacttctacctttccttgccaaaaacatc
ttgctggccccttgcttaatgtttaaaaggcgagaaggctctgaacgttt
tagcttttgttactaagagtcttgtgggttttgtctaggtaaatgggatt
aagaaactcttaatcatgttttgtggctccatgaaacttttttcccattc
cagtctagtagggggtagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tg
gaattccaagtgtccagggaacccacaaaaggtttcttgcagctttttag
ctgtctggcgtgcagcagaaacccctcttgtgtcaactgctaaacactgc
tgtccctgtgtcctgaatggaatgcgccaaaactctggaagaccacagct
tcacatgtcggccatgtgtgctggcggcagccggctccagccgcctcaga
cattttaatttgtcactcgggaaagcagatgtgtcagggagttggagaac
ttgggaggtgaccacagcaaactccctgaggggcctaccccaccaggacc
tctgatgagcctcatccaggcaggctcagagcagagggggcaaagagagg
gagaagctatcccaggcctgggcacacagcgggaggaaggccatgtccct
gcctgggattgggacagagactgaagtctgagtccctgtcatcacctgcc
tagcactctgcaggccctgtattgcataatccacatcagcaaagtgcttt
ccaagtgtgtcattaacattctcagtggccctttgagtagcacacctatc
ctccgagatttcttgaagttggtgtgaggatctgttcactgtcctttaaa
ttccactttacatccacatgagccccaggaataggtcccatttgttacac
tttactttatactcaggacatctgcttctgagggaaatggaatttgacat
taaaaaaaatgtcctgttttcacagtgaaaaggagccaataaatgtgttt
tcaggtagcatccatgcctttgaatcaaagcaaactctaatatattcaat
aaacactaattaagttataacacctctgaaagcagtaaacactcttgtgg
tattccaagaaactgagagaccttctctttctccccaccaacacctttac
ctctgcccagccctcatccacccaccacagaaactacaccgttgctcagt
gccactgacaatgaaagtcagacaaattattcccactgacaccatgggtg
gtgaagagtgaatgtctgatattatttttatttatgcacctattcagtaa
gagaaaaaattatctaaaatcaaactatgagataaggcagcaggatagct
gctacaaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_57218654_57219556
seq2: B6Ng01-280B17.b_48_949 (reverse)

seq1  CACACACACACACACACACACACACACACACACTCTACCCCCTACCTAGA  50
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CACACACACACACACACACACACACACACACACTCTACCCCCTA-CTAGA  49

seq1  CTGGAATGGGAAAAAAGTTTCATGGAGCCACAAAACATGATTAAGAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATGGGAAAAAAGTTTCATGGAGCCACAAAACATGATTAAGAGTTT  99

seq1  CTTAATCCCATTTACCTAGACAAAACCCACAAGACTCTTAGTAACAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCCCATTTACCTAGACAAAACCCACAAGACTCTTAGTAACAAAAG  149

seq1  CTAAAACGTTCAGAGCCTTCTCGCCTTTTAAACATTAAGCAAGGGGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACGTTCAGAGCCTTCTCGCCTTTTAAACATTAAGCAAGGGGCCAG  199

seq1  CAAGATGTTTTTGGCAAGGAAAGGTAGAAGTCACCAAGGACAGTATGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGTTTTTGGCAAGGAAAGGTAGAAGTCACCAAGGACAGTATGATT  249

seq1  CCATCCCTGGCATCCACTTCGCAGAAGGAGAGAAGAAAGTCCAGCAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCTGGCATCCACTTCGCAGAAGGAGAGAAGAAAGTCCAGCAAGTT  299

seq1  GTCCTCTGACCTCTGCACATGCACCATTGGTGTTTTCACATGCACACAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGACCTCTGCACATGCACCATTGGTGTTTTCACATGCACACAAT  349

seq1  GTATAAAATGGAATCTTAAAAATATGGTTATTTCATAACTGGTTCTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAATGGAATCTTAAAAATATGGTTATTTCATAACTGGTTCTATTT  399

seq1  GAATGCTAACCCAAATCATATGGAGCTGCCTCTCCAAAAGAATAGTTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTAACCCAAATCATATGGAGCTGCCTCTCCAAAAGAATAGTTCAC  449

seq1  ACAGTCTCTGTTAACTGTATCCTGCTTTCTTATAGTCTGAACTATGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTCTGTTAACTGTATCCTGCTTTCTTATAGTCTGAACTATGAGCA  499

seq1  GTTTGCATATATGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCATATATGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  549

seq1  GTGTGAACGTGCTGGTTTCTACCCCACTGGAAATCTGGTTGTCCAAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAACGTGCTGGTTTCTACCCCACTGGAAATCTGGTTGTCCAAAGAT  599

seq1  GCTAGAAAAGCAGAGAGACGCTCCTTCCAATCTCTCAGTTTTGTGGCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAAAGCAGAGAGACGCTCCTTCCAATCTCTCAGTTTTGTGGCTAA  649

seq1  GGTTCAGCACTGCAATAGTTAACTTCATATCAATTTGGTTGGGCCATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGCACTGCAATAGTTAACTTCATATCAATTTGGTTGGGCCATATT  699

seq1  GCCAGATATGTGGTCAAAAATTCTGGATGTTTCTGTGAGGTTTCTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATATGTGGTCAAAAATTCTGGATGTTTCTGTGAGGTTTCTTTTTT  749

seq1  TTTTTTTTTTTTTGTTATTGTTGATGAGAATAACATTTAAATCAGTGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTGTTATTGTTGATGAGAATAACATTTAAATCAGTGAAA  799

seq1  CTTGAGTAAGGTGATTGTCCTCTGGAACGTGGGTGGGCCTCATCAAATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTAAGGTGATTGTCCTCTGGAACGTGGGTGGGCCTCATCAAATCA  849

seq1  ACGAGAGGCCTGAGTGGAATAAGAAACTGACCTCCTCAGGTGGGAAGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAGGCCTGAGTGGAATAAGAAACTGACCTCCTCAGGTGGGAAGGAA  899

seq1  TTC  903
      |||
seq2  TTC  902

seq1: chr1_57153556_57154677
seq2: B6Ng01-280B17.g_67_1177

seq1  GAATTCCAAGTGTCCAGGGAACCCACAAAAGGTTTCTTGCAGCTTTTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTGTCCAGGGAACCCACAAAAGGTTTCTTGCAGCTTTTTAG  50

seq1  CTGTCTGGCGTGCAGCAGAAACCCCTCTTGTGTCAACTGCTAAACACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGGCGTGCAGCAGAAACCCCTCTTGTGTCAACTGCTAAACACTGC  100

seq1  TGTCCCTGTGTCCTGAATGGAATGCGCCAAAACTCTGGAAGACCACAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTGTGTCCTGAATGGAATGCGCCAAAACTCTGGAAGACCACAGCT  150

seq1  TCACATGTCGGCCATGTGTGCTGGCGGCAGCCGGCTCCAGCCGCCTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGTCGGCCATGTGTGCTGGCGGCAGCCGGCTCCAGCCGCCTCAGA  200

seq1  CATTTTAATTTGTCACTCGGGAAAGCAGATGTGTCAGGGAGTTGGAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAATTTGTCACTCGGGAAAGCAGATGTGTCAGGGAGTTGGAGAAC  250

seq1  TTGGGAGGTGACCACAGCAAACTCCCTGAGGGGCCTACCCCACCAGGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGTGACCACAGCAAACTCCCTGAGGGGCCTACCCCACCAGGACC  300

seq1  TCTGATGAGCCTCATCCAGGCAGGCTCAGAGCAGAGGGGGCAAAGAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGAGCCTCATCCAGGCAGGCTCAGAGCAGAGGGGGCAAAGAGAGG  350

seq1  GAGAAGCTATCCCAGGCCTGGGCACACAGCGGGAGGAAGGCCATGTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCTATCCCAGGCCTGGGCACACAGCGGGAGGAAGGCCATGTCCCT  400

seq1  GCCTGGGATTGGGACAGAGACTGAAGTCTGAGTCCCTGTCATCACCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGATTGGGACAGAGACTGAAGTCTGAGTCCCTGTCATCACCTGCC  450

seq1  TAGCACTCTGCAGGCCCTGTATTGCATAATCCACATCAGCAAAGTGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTCTGCAGGCCCTGTATTGCATAATCCACATCAGCAAAGTGCTTT  500

seq1  CCAAGTGTGTCATTAACATTCTCAGTGGCCCTTTGAGTAGCACACCTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGTGTCATTAACATTCTCAGTGGCCCTTTGAGTAGCACACCTATC  550

seq1  CTCCGAGATTTCTTGAAGTTGGTGTGAGGATCTGTTCACTGTCCTTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGAGATTTCTTGAAGTTGGTGTGAGGATCTGTTCACTGTCCTTTAAA  600

seq1  TTCCACTTTACATCCACATGAGCCCCAGGAATAGGTCCCATTTGTTACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTTTACATCCACATGAGCCCCAGGAATAGGTCCCATTTGTTACAC  650

seq1  TTTACTTTATACTCAGGACATCTGCTTCTGAGGGAAATGGAATTTGACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTATACTCAGGACATCTGCTTCTGAGGGAAATGGAATTTGACAT  700

seq1  TAAAAAAAATGTCCTGTTTTCACAGTGAAAAGGAGCCAATAAATGTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAATGTCCTGTTTTCACAGTGAAAAGGAGCCAATAAATGTGTTT  750

seq1  TCAGGTAGCATCCATGCCTTTGAATCAAAGCAAACTCTAATATATTCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAGCATCCATGCCTTTGAATCAAAGCAAACTCTAATATATTCAAT  800

seq1  AAACACTAATTAAGTTATAACACCTCTGAAAGCAGTAAACACTCTTGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTAATTAAGTTATAACACCTCTGAAAGCAGTAAACACTCTTGTGG  850

seq1  TATTCCAAGAAACTGAGAGACCTTCTCTTTCTCCCCACCAACACCTTTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAAGAAACTGAGAGACCTTCTCTTTCTCCCCACCAACACCTTTAC  900

seq1  CTCTGCCCAGCCCTCATCCACCCACCACAGAAACTACACCGTTGCTCAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCCAGCCCTCATCCACCCACCACAGAAACTACACCGTTGCTCAGT  950

seq1  GCCACTGACAAATGAAAGTCAGAACAAATTATTCCCACTGACACCATGGG  1000
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  GCCACTGAC-AATGAAAGTCAG-ACAAATTATTCCCACTGACACCATGGG  998

seq1  T-GTGAAGAGTGAATTGTCTGATA-TATTTTTATTTTAATGCACCTATTC  1048
      | |||||||||||| ||||||||| |||||||||||  ||||||||||||
seq2  TGGTGAAGAGTGAA-TGTCTGATATTATTTTTATTT--ATGCACCTATTC  1045

seq1  AAGTAAGAGAAAAAATTATCTTAAAATCCAAACTATTGAGATAAAAGCAG  1098
       ||||||||||||||||||| |||||| ||||||| |||||| || ||||
seq2  -AGTAAGAGAAAAAATTATC-TAAAAT-CAAACTA-TGAGAT-AAGGCAG  1090

seq1  CAAGGGATAAGCTGCTACAAAAAC  1122
      ||  |||| |||||||||||||||
seq2  CA--GGAT-AGCTGCTACAAAAAC  1111