BAC Information

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BAC

Clone NameB6Ng01-280C24
Chromosome1 (Build37)
Map Location 151,212,343 - 151,401,524
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042792, LOC435647
Downstream geneLOC100042813, Pla2g4a, Ptgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280C24.bB6Ng01-280C24.g
ACCGA079978GA079979
length1,1241,172
definitionB6Ng01-280C24.b B6Ng01-280C24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,212,343 - 151,213,471)(151,400,331 - 151,401,524)
sequence
gaattcagtataaatcagtgcagaagattcttaaaacctaaaaatagaat
gactaaatgacccaggtgtaccattcccaggcatgtactagaagaatttt
aagtagtcctaccaaagataatttgtgcacaactatgtttactgctgaat
tattcaaaatatccagggaaatatatcagtttagatctacatcaacatat
gagtagataaagtaagataaaaggtccatgtacacaatggaactttactc
agccttaacgaaataaatgagatgacattgacaaagtattgacctgaagt
cattatattaaataatctagattcagaagggcaaacagcatatttcttca
tatgaatacatttcatgttttaatgtttatatgtatatttctgtatatgg
gaaggaacttgtgatatgacaatttagggtgatcgtggtgggaaaatgtc
ttttcaggattttataaatcacttgtgacatgaaagtcgagtaggctctc
atgaacaaagaaaaaggacaaaagacagaggaataggctggggagggaaa
aatgagatgagagaggactatgaacaaaggaaaatacacatttaaatctc
ataatgaagctaaacgttaaaaactaatgtaacagattaataaaatacta
aataacacagcatctaagaaatgacatcaggcataaggatcacgtgtgtg
tggaggacattctaaagaggagagaagcctgagtgaggtaacccaatcac
aaaagactcaaacaatatgtactcactgataagtggatattagcccagaa
acttagaatacccaagacacaagatacaatttgcaaaaacacatgaaact
caagaataacaaaaaccaaagtgtggacactttgccccttcttagaaatg
gggaacaaaacacccatggaaaggagttacagagacaaagtttggagctg
agactaaaggatggaccatatagagactgccatacccggggatccatcca
ttatcagcctcaaaatgctaacatcaatgcatacactagcagatttgctg
aaagacctgaaatagctgtcctctggtgagctatgctggggcctagcaac
cagaagtgatgcctcacagtgagc
gaattctcacttgattaaaggggaaacaaaaagtggtttacctgttttct
agttctgaggaaaagaatgagcttcacgtgaaacaaatggaaatcatcaa
agatctaattgcccaggtcagtgtcagaggcacaacaaacttttagcact
cacggaatatagcctattagtttttagcccctgagtagtatcagtggcac
ttgaaatggaatggtcagtctttttcaagcattattgatggagcaaatta
atatgatacatttcaccataagagataactttaaaataagcataatgata
taactctttgcaattccaaatttaccttccttgcttacacaatgttaact
gtaggtactgatatctggtcctttcactgttatttgtagctgtgtgtttg
ttcctagcaataaatgttttttatgctaaaagaaaaaagaaaaaagaaga
agaaagaagaaggaaaattgtaagtctcagagaatgagaatgctaggtct
aggttagcagacagaggctggaagactataagaagggtagaagcaagcgt
ctagacctagatctgggataggtagaagaaagatagaaagagttgtattt
ttttaatgtttgggtatggttctcatccccttatcaggtcaataagttac
tgttacactcctgaaaccttaaaatgtgtttgacacacagttctccttgc
acataccttagttagcacctgaaaaatctactgttaaggtatcttttaaa
tggagaaatagaaaactagtgcactagacaacatttggcaccaatatttc
aatatatgttagtgggaatggtatgatagtcacacacgatgtttcttaat
tctttacatcaagttttcatctaggtatctgaacagactaggaaatgtta
taaccaaaatttgagtaaataagtggaaatatcataattctattgtaggg
aggttacttattcctctgagcagattgtctctattccagtgtggacacag
attgtctctattcagtgtgacccctcccagtctttcttattcaggataga
aataacaccttagtctttttacagtcatgctatttctagattttcctgag
tacctcactcaagggatttagttacttagcatttccgttagtgatcactg
tttgaaaggacatttggacact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_151212343_151213471
seq2: B6Ng01-280C24.b_43_1166

seq1  GAATTCAGTATAAATCAGTGCAGAAGATTCTTAAAACCTAAAAATAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATAAATCAGTGCAGAAGATTCTTAAAACCTAAAAATAGAAT  50

seq1  GACTAAATGACCCAGGTGTACCATTCCCAGGCATGTACTAGAAGAATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAATGACCCAGGTGTACCATTCCCAGGCATGTACTAGAAGAATTTT  100

seq1  AAGTAGTCCTACCAAAGATAATTTGTGCACAACTATGTTTACTGCTGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTCCTACCAAAGATAATTTGTGCACAACTATGTTTACTGCTGAAT  150

seq1  TATTCAAAATATCCAGGGAAATATATCAGTTTAGATCTACATCAACATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAAATATCCAGGGAAATATATCAGTTTAGATCTACATCAACATAT  200

seq1  GAGTAGATAAAGTAAGATAAAAGGTCCATGTACACAATGGAACTTTACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGATAAAGTAAGATAAAAGGTCCATGTACACAATGGAACTTTACTC  250

seq1  AGCCTTAACGAAATAAATGAGATGACATTGACAAAGTATTGACCTGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTAACGAAATAAATGAGATGACATTGACAAAGTATTGACCTGAAGT  300

seq1  CATTATATTAAATAATCTAGATTCAGAAGGGCAAACAGCATATTTCTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATATTAAATAATCTAGATTCAGAAGGGCAAACAGCATATTTCTTCA  350

seq1  TATGAATACATTTCATGTTTTAATGTTTATATGTATATTTCTGTATATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATACATTTCATGTTTTAATGTTTATATGTATATTTCTGTATATGG  400

seq1  GAAGGAACTTGTGATATGACAATTTAGGGTGATCGTGGTGGGAAAATGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAACTTGTGATATGACAATTTAGGGTGATCGTGGTGGGAAAATGTC  450

seq1  TTTTCAGGATTTTATAAATCACTTGTGACATGAAAGTCGAGTAGGCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGATTTTATAAATCACTTGTGACATGAAAGTCGAGTAGGCTCTC  500

seq1  ATGAACAAAGAAAAAGGACAAAAGACAGAGGAATAGGCTGGGGAGGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAAAGAAAAAGGACAAAAGACAGAGGAATAGGCTGGGGAGGGAAA  550

seq1  AATGAGATGAGAGAGGACTATGAACAAAGGAAAATACACATTTAAATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATGAGAGAGGACTATGAACAAAGGAAAATACACATTTAAATCTC  600

seq1  ATAATGAAGCTAAACGTTAAAAACTAATGTAACAGATTAATAAAATACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAAGCTAAACGTTAAAAACTAATGTAACAGATTAATAAAATACTA  650

seq1  AATAACACAGCATCTAAGAAATGACATCAGGCATAAGGATCACGTGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACACAGCATCTAAGAAATGACATCAGGCATAAGGATCACGTGTGTG  700

seq1  TGGAGGACATTCTAAAGAGGAGAGAAGCCTGAGTGAGGTAACCCAATCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGACATTCTAAAGAGGAGAGAAGCCTGAGTGAGGTAACCCAATCAC  750

seq1  AAAAGAACTCAAACAATATGTACTCACTGATAAGTGGATATTAGCCCAGA  800
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAG-ACTCAAACAATATGTACTCACTGATAAGTGGATATTAGCCCAGA  799

seq1  AACTTAGAATACCCAAGACACAAGATACAATTTGC-AAAACACATGAAAC  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AACTTAGAATACCCAAGACACAAGATACAATTTGCAAAAACACATGAAAC  849

seq1  TCAAGAATAACAAAAACCAAAGTGTGGACACTTTGCCCCTTCTTAG-AAT  898
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCAAGAATAACAAAAACCAAAGTGTGGACACTTTGCCCCTTCTTAGAAAT  899

seq1  TGGGAACAAAACACCCATGG-AAGGAGTTACAGAGACAAAGTTTGGAGCT  947
       ||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGGGAACAAAACACCCATGGAAAGGAGTTACAGAGACAAAGTTTGGAGCT  949

seq1  GAGACTAAAGGATGGACCATATAGAGACTGCCATACCCGGGGATCCATTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGACTAAAGGATGGACCATATAGAGACTGCCATACCCGGGGATCCA-TC  998

seq1  CATAATCAGCCTCCAAATGCTAACACCATTGCATACACTAGCAAGATTTT  1047
      ||| ||||||||| ||||||||||| || ||||||||||||| ||| |||
seq2  CATTATCAGCCTCAAAATGCTAACATCAATGCATACACTAGC-AGA-TTT  1046

seq1  GCTGAAAGGACCCTGATATAGCTGT-CTCTTGTGAGGCTATGCTGGGGCC  1096
      ||||||||   ||||| |||||||| |||| |||| ||||||||||||||
seq2  GCTGAAAG--ACCTGAAATAGCTGTCCTCTGGTGA-GCTATGCTGGGGCC  1093

seq1  TAGCAAACACAGAAGTGGATG-CTCACAGTGAGC  1129
      ||||||   ||||||| |||| ||||||||||||
seq2  TAGCAA--CCAGAAGT-GATGCCTCACAGTGAGC  1124

seq1: chr1_151400331_151401524
seq2: B6Ng01-280C24.g_68_1239 (reverse)

seq1  AGTGT-CAAATGTCTTTTAAAACAGTGATCACTTACAGGAAATATGCTAA  49
      ||||| |||||||| ||| |||||||||||||| || ||||  |||||||
seq2  AGTGTCCAAATGTCCTTTCAAACAGTGATCACTAAC-GGAA--ATGCTAA  47

seq1  GTATATTTTAAAATTCCTTTTGAAGTGAAAGTACTTAAAGAAAAATCCTA  99
      |||  |    |||| ||||    |||| | |||||   || ||||| |||
seq2  GTAACT----AAATCCCTT---GAGTG-AGGTACT--CAGGAAAAT-CTA  86

seq1  GGAAAATAGCATGACTGTAAAAAAGACTAAGGTGTTTATTTTCTATTCCC  149
      |  ||||||||||||||| |||||||||||||||||   |||||||  ||
seq2  G--AAATAGCATGACTGT-AAAAAGACTAAGGTGTT--ATTTCTAT--CC  129

seq1  TGATTAAGAAAGAACTGTGGAGCGTCACACTGGAATAGAGACAATCTGTG  199
      ||| |||||||| |||| |  | |||||||| ||||||||||||||||||
seq2  TGAATAAGAAAG-ACTGGGAGGGGTCACACT-GAATAGAGACAATCTGTG  177

seq1  T-CACACTGGAATAGAGACAATCTGCTCAGAGGAATAAGTAACCTCCTTA  248
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCCACACTGGAATAGAGACAATCTGCTCAGAGGAATAAGTAACCTCCCTA  227

seq1  CATAAGAATTATGATATTTTCCACTTATTTACTTCAATTTTGGTTATAAC  298
      ||  |||||||||||| ||||||||||||||||  |||||||||||||||
seq2  CAATAGAATTATGATA-TTTCCACTTATTTACTCAAATTTTGGTTATAAC  276

seq1  ATTTCCTAGTCTGTTCAGATACCTAGATGAAAACTTGATGTAAAGAATTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTAGTCTGTTCAGATACCTAGATGAAAACTTGATGTAAAGAATTA  326

seq1  AGAAACATCGTGTGTGACTATCATACCATTCCCACTAACATATATTGAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATCGTGTGTGACTATCATACCATTCCCACTAACATATATTGAAA  376

seq1  TATTGGTGCCAAATGTTGTCTAGTGCACTAGTTTTCTATTTCTCCATTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTGCCAAATGTTGTCTAGTGCACTAGTTTTCTATTTCTCCATTTA  426

seq1  AAAGATACCTTAACAGTAGATTTTTCAGGTGCTAACTAAGGTATGTGCAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATACCTTAACAGTAGATTTTTCAGGTGCTAACTAAGGTATGTGCAA  476

seq1  GGAGAACTGTGTGTCAAACACATTTTAAGGTTTCAGGAGTGTAACAGTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACTGTGTGTCAAACACATTTTAAGGTTTCAGGAGTGTAACAGTAA  526

seq1  CTTATTGACCTGATAAGGGGATGAGAACCATACCCAAACATTAAAAAAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGACCTGATAAGGGGATGAGAACCATACCCAAACATTAAAAAAAT  576

seq1  ACAACTCTTTCTATCTTTCTTCTACCTATCCCAGATCTAGGTCTAGACGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCTTTCTATCTTTCTTCTACCTATCCCAGATCTAGGTCTAGACGC  626

seq1  TTGCTTCTACCCTTCTTATAGTCTTCCAGCCTCTGTCTGCTAACCTAGAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTACCCTTCTTATAGTCTTCCAGCCTCTGTCTGCTAACCTAGAC  676

seq1  CTAGCATTCTCATTCTCTGAGACTTACAATTTTCCTTCTTCTTTCTTCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATTCTCATTCTCTGAGACTTACAATTTTCCTTCTTCTTTCTTCTT  726

seq1  CTTTTTTCTTTTTTCTTTTAGCATAAAAAACATTTATTGCTAGGAACAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCTTTTTTCTTTTAGCATAAAAAACATTTATTGCTAGGAACAAA  776

seq1  CACACAGCTACAAATAACAGTGAAAGGACCAGATATCAGTACCTACAGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGCTACAAATAACAGTGAAAGGACCAGATATCAGTACCTACAGTT  826

seq1  AACATTGTGTAAGCAAGGAAGGTAAATTTGGAATTGCAAAGAGTTATATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGTGTAAGCAAGGAAGGTAAATTTGGAATTGCAAAGAGTTATATC  876

seq1  ATTATGCTTATTTTAAAGTTATCTCTTATGGTGAAATGTATCATATTAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCTTATTTTAAAGTTATCTCTTATGGTGAAATGTATCATATTAAT  926

seq1  TTGCTCCATCAATAATGCTTGAAAAAGACTGACCATTCCATTTCAAGTGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCATCAATAATGCTTGAAAAAGACTGACCATTCCATTTCAAGTGC  976

seq1  CACTGATACTACTCAGGGGCTAAAAACTAATAGGCTATATTCCGTGAGTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATACTACTCAGGGGCTAAAAACTAATAGGCTATATTCCGTGAGTG  1026

seq1  CTAAAAGTTTGTTGTGCCTCTGACACTGACCTGGGCAATTAGATCTTTGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGTTTGTTGTGCCTCTGACACTGACCTGGGCAATTAGATCTTTGA  1076

seq1  TGATTTCCATTTGTTTCACGTGAAGCTCATTCTTTTCCTCAGAACTAGAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCCATTTGTTTCACGTGAAGCTCATTCTTTTCCTCAGAACTAGAA  1126

seq1  AACAGGTAAACCACTTTTTGTTTCCCCTTTAATCAAGTGAGAATTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTAAACCACTTTTTGTTTCCCCTTTAATCAAGTGAGAATTC  1172