BAC Information

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BAC

Clone NameB6Ng01-280K23
Chromosome1 (Build37)
Map Location 124,908,634 - 125,050,190
singlet/doubletdoublet
Overlap geneLOC666983
Upstream geneLOC666971
Downstream geneDpp10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280K23.bB6Ng01-280K23.g
ACCGA080350GA080351
length4211,070
definitionB6Ng01-280K23.b B6Ng01-280K23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,908,634 - 124,909,060)(125,049,118 - 125,050,190)
sequence
aataacatgacaaaaagtttgatttacaattaagtaaatagatgtagatg
tgtaaataaaggatggagaatatgaacaaagcaggcacatttaaacaaga
ttaaaagaaaaaagagaaagagccccaaatcaataaaaccaggaaggtag
gagggtgtatgtaatgaattataaaaataaaagtaattaaaggtcattgt
gtctgttcagaatctctcacacatgagcttctttggagaactatgccctt
gattccatcaccctatccctagatccttaatactccccagtttttctgtt
tttaacttgttaattttagttgaatacatataggtccttttaaatatagt
ttctacatgtccattcattatgtgaaagtttgttcgtgtgtatgtgtgtg
tgtgtgtgtgtgtgtgtgtgt

gaattctcagtgtctgcattaaaatgagtacatgtcttgtgatgcactgc
tagatcccatgataactttcttacatgggatggtgagggttggaggtgaa
atgaggaaagaggataaaatttgaaatgtaaatatagaaaatatataata
aaaaagaaaatatataataaaaatgaagaagataaataaataaattaatt
aattaattaagaaagtccttacttgtagggctccaaacagatgttcaata
ctttgctacccatttataaagttttacaaactttaaatatgctgtctaat
ttatgattggttggttttcatttttttagaatctaatacccaaggacata
taacacactcaatacatgtttgggacatgaatgaagacatctaggctgtt
ctgtgctgttccagccactattctttgttagaatgaaggggaaaaaaaac
caatacttgagctttctaactatctgagctaagaaaccaatgttcaaaga
tatttcaatggacctcccatgataattaaaatattctgtcattgggcatt
atacactgacaacacagatgtttttgttttgctcagcacatctctgctta
aagttctaaccatagaaatgtagaacaaaataattgccatcatagaacac
tgtttgggattctgacctgacatcctgatacagatcttctagatttgagt
gtaactgcccctccatgattttttgtcgggcatgtgggaccttgttacaa
gataggcatgagaaatgataaggttgaatgacctaaaatttcaggaatcc
agaacggagaatggcaggagtggagccggagccattctctgtctaccgca
acctgctcttgaacacaaaaccaagacaccccactgaggaccatggcagt
cactaatgtagcataaaaaacccttgagttctctatgctagtgatgtatc
tagatatatccttgggcattcaccgtccatactgtgcacctcttctgcaa
aggctgtcattcctggtcacctggattaagtgtctcgttcacatctgcca
tcaattaagaagtatgacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_124908634_124909060
seq2: B6Ng01-280K23.b_52_478

seq1  GAATTCAATAACATGACAAAAAGTTTGATTTACAATTAAGTAAATAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAACATGACAAAAAGTTTGATTTACAATTAAGTAAATAGATG  50

seq1  TAGATGTGTAAATAAAGGATGGAGAATATGAACAAAGCAGGCACATTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTGTAAATAAAGGATGGAGAATATGAACAAAGCAGGCACATTTAA  100

seq1  ACAAGATTAAAAGAAAAAAGAGAAAGAGCCCCAAATCAATAAAACCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATTAAAAGAAAAAAGAGAAAGAGCCCCAAATCAATAAAACCAGGA  150

seq1  AGGTAGGAGGGTGTATGTAATGAATTATAAAAATAAAAGTAATTAAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGAGGGTGTATGTAATGAATTATAAAAATAAAAGTAATTAAAGGT  200

seq1  CATTGTGTCTGTTCAGAATCTCTCACACATGAGCTTCTTTGGAGAACTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGTCTGTTCAGAATCTCTCACACATGAGCTTCTTTGGAGAACTAT  250

seq1  GCCCTTGATTCCATCACCCTATCCCTAGATCCTTAATACTCCCCAGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGATTCCATCACCCTATCCCTAGATCCTTAATACTCCCCAGTTTT  300

seq1  TCTGTTTTTAACTTGTTAATTTTAGTTGAATACATATAGGTCCTTTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTTAACTTGTTAATTTTAGTTGAATACATATAGGTCCTTTTAAA  350

seq1  TATAGTTTCTACATGTCCATTCATTATGTGAAAGTTTGTTCGTGTGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTTCTACATGTCCATTCATTATGTGAAAGTTTGTTCGTGTGTATG  400

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGT  427
      |||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGT  427


seq1: chr1_125049118_125050190
seq2: B6Ng01-280K23.g_66_1135 (reverse)

seq1  TGTTCATACTTCTTTATTTGATGGCAGATGTGAACGAGACACCTTACTCA  50
      || ||||||||| ||| |||||||||||||||||||||||| |||| || 
seq2  TGGTCATACTTC-TTAATTGATGGCAGATGTGAACGAGACA-CTTAATCC  48

seq1  GGGTGAACCAGGGATTAAACAGCCTTTGCAGGAAGGAGTGCACAGGAAGG  100
       |||| |||||| ||   |||||||||||| ||||  ||||||| | | |
seq2  AGGTG-ACCAGGAAT--GACAGCCTTTGCA-GAAGAGGTGCACA-GTATG  93

seq1  GACGCTGAATGCCC-AGGATATATCTAGATACATCACTAGCATAGAGAAC  149
      |||| ||||||||| |||||||||||||||||||||||||||||||||||
seq2  GACGGTGAATGCCCAAGGATATATCTAGATACATCACTAGCATAGAGAAC  143

seq1  TCA--GGGTTTTTATGCTACATTAGTGACTGCCATGGTCCTCAGTGGGGT  197
      |||  || ||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGTTTTTTATGCTACATTAGTGACTGCCATGGTCCTCAGTGGGGT  193

seq1  GTCTTGGTTTTGTGTTCAAGAGCAGGTTGCGGTAGACAGAGAATGGCTCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGTTTTGTGTTCAAGAGCAGGTTGCGGTAGACAGAGAATGGCTCC  243

seq1  GGCTCCACTCCTGCCATTCTCCGTTCTGGATTCCTGAAATTTTAGGTCAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCACTCCTGCCATTCTCCGTTCTGGATTCCTGAAATTTTAGGTCAT  293

seq1  TCAACCTTATCATTTCTCATGCCTATCTTGTAACAAGGTCCCACATGCCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTTATCATTTCTCATGCCTATCTTGTAACAAGGTCCCACATGCCC  343

seq1  GACAAAAAATCATGGA-GGGCAGTTACACTCAAATCTAGAAGATCTGTAT  396
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GACAAAAAATCATGGAGGGGCAGTTACACTCAAATCTAGAAGATCTGTAT  393

seq1  CAGGATGTCAGGTCAGAATCCCAAACAGTGTTCTATGATGGCAATTATTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGTCAGGTCAGAATCCCAAACAGTGTTCTATGATGGCAATTATTT  443

seq1  TGTTCTACATTTCTATGGTTAGAACTTTAAGCAGAGATGTGCTGAGCAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTACATTTCTATGGTTAGAACTTTAAGCAGAGATGTGCTGAGCAAA  493

seq1  ACAAAAACATCTGTGTTGTCAGTGTATAATGCCCAATGACAGAATATTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACATCTGTGTTGTCAGTGTATAATGCCCAATGACAGAATATTTT  543

seq1  AATTATCATGGGAGGTCCATTGAAATATCTTTGAACATTGGTTTCTTAGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCATGGGAGGTCCATTGAAATATCTTTGAACATTGGTTTCTTAGC  593

seq1  TCAGATAGTTAGAAAGCTCAAGTATTGGTTTTTTTTCCCCTTCATTCTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAGTTAGAAAGCTCAAGTATTGGTTTTTTTTCCCCTTCATTCTAA  643

seq1  CAAAGAATAGTGGCTGGAACAGCACAGAACAGCCTAGATGTCTTCATTCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAATAGTGGCTGGAACAGCACAGAACAGCCTAGATGTCTTCATTCA  693

seq1  TGTCCCAAACATGTATTGAGTGTGTTATATGTCCTTGGGTATTAGATTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAAACATGTATTGAGTGTGTTATATGTCCTTGGGTATTAGATTCT  743

seq1  AAAAAAATGAAAACCAACCAATCATAAATTAGACAGCATATTTAAAGTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATGAAAACCAACCAATCATAAATTAGACAGCATATTTAAAGTTT  793

seq1  GTAAAACTTTATAAATGGGTAGCAAAGTATTGAACATCTGTTTGGAGCCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACTTTATAAATGGGTAGCAAAGTATTGAACATCTGTTTGGAGCCC  843

seq1  TACAAGTAAGGACTTTCTTAATTAATTAATTAATTTATTTATTTATCTTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTAAGGACTTTCTTAATTAATTAATTAATTTATTTATTTATCTTC  893

seq1  TTCATTTTTATTATATATTTTCTTTTTTATTATATATTTTCTATATTTAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTATTATATATTTTCTTTTTTATTATATATTTTCTATATTTAC  943

seq1  ATTTCAAATTTTATCCTCTTTCCTCATTTCACCTCCAACCCTCACCATCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAATTTTATCCTCTTTCCTCATTTCACCTCCAACCCTCACCATCC  993

seq1  CATGTAAGAAAGTTATCATGGGATCTAGCAGTGCATCACAAGACATGTAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAGAAAGTTATCATGGGATCTAGCAGTGCATCACAAGACATGTAC  1043

seq1  TCATTTTAATGCAGACACTGAGAATTC  1073
      |||||||||||||||||||||||||||
seq2  TCATTTTAATGCAGACACTGAGAATTC  1070


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