BAC Information

Click to search

BAC

Clone NameB6Ng01-280N18
Chromosome1 (Build37)
Map Location 123,918,518 - 123,919,669
singlet/doubletsinglet
Overlap genenone
Upstream geneAI848258, Insig2, Ccdc93, LOC100041926, Htr5b, LOC666656, Ddx18
Downstream geneLOC666971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280N18.bB6Ng01-280N18.g
ACCGA080483GA080484
length1,148926
definitionB6Ng01-280N18.b B6Ng01-280N18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgctaagtgtttaggctcatggccactaagctcctggtctctgt
ttgcatctgctttcccaatgctgagattgtaagaatggactacctactta
tgtcagttctgggaatgaaaatcaggccttcacatttgaatgcaaatgct
ttagtgaccaaaccactttctcctcagtctagagctgaaaaattttcagc
gttttctggaaaggcttcaacactgtattaatttaaagggtaccatggga
taatttcatcaacaattataacagaactggtaagaaaattgtgacagttg
atcacacgttcaccattttgattagagttctacttcattggtcttgaaat
cttgcatcttagccaccaccaatgattcttcctgtttccttcactttgtt
cagtcaggatttttgaacattctttgaacactaccacatagtacatactg
tttgcactggggatcttgtttggactgtctgacactgcattggcagacac
atcttttatgagtaagaagccacatagggaaatttttagagcagtgactt
ctgtgtttccatgatggatcacaatgaacacagaatgaattagtctgtgg
tgtttctattaaatagtgggagaggaagcacacatgcttcatcatctgca
gaccatcagaaactaagtgttgaatgacacagatgaattctgggaatggc
aaaaacaagagggaagaaagagcagcaaagactttttggtatgagccatt
tgctttttaagcaatgaagtcatttgtcttcatccagtgatatatctact
gccccctgaagaaagagaaaagcactaacccatgtccaataggagatgga
ccataggcacccagaggtgtttacatgctttggtaggtgcactgacccaa
ggccttctcctaagatttgagaagggaaatgactaataaatccagggaga
tctctgtagtttatgtcatttgctgagctggtgatgtcactgcttaagca
cagtgacacagagaatccttcctttctcagcagagcttgacttgagagat
gctattacacttgacttttttttttttttttaagaaaaatgctcagcttt
ttattgtcagataatatctacagtaagaaatatctcttatttttagaa

gaattctcactaaaccctcctggtcctgggcttttttttttttttttttt
tttttttggttgtaagccttttaataactgcttctatttcttcaggggtt
atgggactatttagatggcttatctgatcctgatttaactttggtatttg
atatctatcaggaaaaattttcgatttcatccagattttccagttttgtt
gagtataggcttttgtagtaggatttgatgattttatgaatttccccagg
ttctgtttttctgtctcccttttcatctctgattttgttaatttggctac
tgtctctgtgccctctggtcagtatagctaagggtttctctatcttgttg
attttctcaaagaaccggctcctggttttgttgattctttgcatagttct
ttttgtttctacttggttgatttaagccccaagttcaattattttctgct
gtctactcctcttgagtgtgtttgcttctttctgttctagagctcacagt
tatgctgttaagctgctggtgtgttctttctccagtttcttctggaggcc
actcagagctgagttttcttcttagcactgctttcattgtgtaccataag
tttgggtatatggtgctttcactttcattaaattaccaaatgtttttaat
ttctttatttattccttgaccaagttatcattgagtagagtgttattcag
cttccgtgtgtatatgggctttccattgatttgttgctattgaaaatcac
tcttagtctgtggtgatctgatctgatgcatgggatgatttcaatattct
tgtatctgttgaggcctgttttgtgaccaattatatagtcaattttggag
acgctaccatgagtggtgagaagaagtattattcttttgttttagatgaa
tgttctatagatattctgtatatcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_123918518_123919669
seq2: B6Ng01-280N18.b_44_1191

seq1  GAATTCTGCTAAGTGTTTAGGCTCATGGCCACTAAGCTCCTGGTCTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTAAGTGTTTAGGCTCATGGCCACTAAGCTCCTGGTCTCTGT  50

seq1  TTGCATCTGCTTTCCCAATGCTGAGATTGTAAGAATGGACTACCTACTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCTGCTTTCCCAATGCTGAGATTGTAAGAATGGACTACCTACTTA  100

seq1  TGTCAGTTCTGGGAATGAAAATCAGGCCTTCACATTTGAATGCAAATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTTCTGGGAATGAAAATCAGGCCTTCACATTTGAATGCAAATGCT  150

seq1  TTAGTGACCAAACCACTTTCTCCTCAGTCTAGAGCTGAAAAATTTTCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGACCAAACCACTTTCTCCTCAGTCTAGAGCTGAAAAATTTTCAGC  200

seq1  GTTTTCTGGAAAGGCTTCAACACTGTATTAATTTAAAGGGTACCATGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGGAAAGGCTTCAACACTGTATTAATTTAAAGGGTACCATGGGA  250

seq1  TAATTTCATCAACAATTATAACAGAACTGGTAAGAAAATTGTGACAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCATCAACAATTATAACAGAACTGGTAAGAAAATTGTGACAGTTG  300

seq1  ATCACACGTTCACCATTTTGATTAGAGTTCTACTTCATTGGTCTTGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACGTTCACCATTTTGATTAGAGTTCTACTTCATTGGTCTTGAAAT  350

seq1  CTTGCATCTTAGCCACCACCAATGATTCTTCCTGTTTCCTTCACTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATCTTAGCCACCACCAATGATTCTTCCTGTTTCCTTCACTTTGTT  400

seq1  CAGTCAGGATTTTTGAACATTCTTTGAACACTACCACATAGTACATACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGGATTTTTGAACATTCTTTGAACACTACCACATAGTACATACTG  450

seq1  TTTGCACTGGGGATCTTGTTTGGACTGTCTGACACTGCATTGGCAGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACTGGGGATCTTGTTTGGACTGTCTGACACTGCATTGGCAGACAC  500

seq1  ATCTTTTATGAGTAAGAAGCCACATAGGGAAATTTTTAGAGCAGTGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTATGAGTAAGAAGCCACATAGGGAAATTTTTAGAGCAGTGACTT  550

seq1  CTGTGTTTCCATGATGGATCACAATGAACACAGAATGAATTAGTCTGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTCCATGATGGATCACAATGAACACAGAATGAATTAGTCTGTGG  600

seq1  TGTTTCTATTAAATAGTGGGAGAGGAAGCACACATGCTTCATCATCTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTATTAAATAGTGGGAGAGGAAGCACACATGCTTCATCATCTGCA  650

seq1  GACCATCAGAAACTAAGTGTTGAATGACACAGATGAATTCTGGGAATGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCAGAAACTAAGTGTTGAATGACACAGATGAATTCTGGGAATGGC  700

seq1  AAAAACAAGAGGGAAGAAAGAGCAGCAAAGACTTTTTGGTATGAGCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAGAGGGAAGAAAGAGCAGCAAAGACTTTTTGGTATGAGCCATT  750

seq1  TGCTTTTTAAGCAATGAAGTCATTTGTCTTCATCCAGTGATATATCTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTAAGCAATGAAGTCATTTGTCTTCATCCAGTGATATATCTACT  800

seq1  GCCCCCTGAAGAAAGAGAAAAGCACTAACCCATGTCCAATAGGAGATGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCTGAAGAAAGAGAAAAGCACTAACCCATGTCCAATAGGAGATGGA  850

seq1  CCATAGGCACCCAGAGGTGTTTACATGCTTTGGTAGGTGCACTGACCCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGCACCCAGAGGTGTTTACATGCTTTGGTAGGTGCACTGACCCAA  900

seq1  GGCCTTCTCCTAAGATTTGAGAAGGGAAATGACTAATAAATCCAGGGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCTCCTAAGATTTGAGAAGGGAAATGACTAATAAATCCAGGGAGA  950

seq1  TCTCTGTAGTTTATGTCATTTGCTGAGCTGGTGATGGTCACTGCTTAAGC  1000
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTCTGTAGTTTATGTCATTTGCTGAGCTGGTGAT-GTCACTGCTTAAGC  999

seq1  ACAGTGACACAGAGAATCCTTCCTTTCTCAAGCAGGAGCCTGAACTTGAG  1050
      ||||||||||||||||||||||||||||| |||| |||| || |||||||
seq2  ACAGTGACACAGAGAATCCTTCCTTTCTC-AGCA-GAGCTTG-ACTTGAG  1046

seq1  AGATGCTATTACACTTGAACTTTTTTTTTTTTTTTAAG-AAAATGCTCAA  1099
      ||||||||||||||||||  |||||||||||||||||| |||||||||| 
seq2  AGATGCTATTACACTTGACTTTTTTTTTTTTTTTTAAGAAAAATGCTCAG  1096

seq1  CCTTTTA-TGTCAGATAAATACTACAGTAAGATATTATCTCTTATTTTTT  1148
      | ||||| ||||||||||   ||||||||||| | ||||||||| |||||
seq2  CTTTTTATTGTCAGATAATATCTACAGTAAGA-AATATCTCTTA-TTTTT  1144

seq1  AGAA  1152
      ||||
seq2  AGAA  1148


| Home | SequenceCutter | Blast | Download |