BAC Information

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BAC

Clone NameB6Ng01-281C15
Chromosome1 (Build37)
Map Location 105,907,900 - 105,909,045
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383546, LOC100041134, Cdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281C15.bB6Ng01-281C15.g
ACCGA080710GA080711
length1,1571,183
definitionB6Ng01-281C15.b B6Ng01-281C15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttcccatgctcattaatcattaatgggttcttatgtatgctga
ataattattctttcttgattcaggtcattggaagtgaattctacaaatat
atggtttatcttttcatttttatattatcttttcacttagttatgatctt
caaattttcaggtatagataattattgataataaattaaatcacacatgg
aaaattttcaggtaatgacagttttcctaactgatatttgttgtgtcaaa
taatcaatcagttaattaatgtaaatgagcaatgaattgaataattaaaa
tatgaagttgaacatctccagcatgttccaaagtggaatatcactttaca
gagttctcctgtggggaagaaagcaaataacagagaaactgaaggagttc
tatgcaacctggaggatgacattggcctagtagaatgtgactttagagta
atgtttgtttgcctttctaaagctgaactgagcatccaaagtgagaggga
cacagtgcacaccgaaataaactgagcatacatagtgaaagcctaccagg
aacatagaaatttttttcagcgcttagatttctaggaggctaaattatag
agacatccagagacaagagtactcacatgaaactttgaaagatgtgttca
gaaaatagcatgaaataatgacactgttaccataccaaaaataattgaac
cccgtctccaattcttatgtttaaaatctagtttcctatttttggtaaga
accttcaatgccatgagaatgaacagtatcatgagtatggtggacactca
cataaaggaatctgtgactactatagaagaaatagtggtgccagcaaact
cccattctccctaccctataactctacaattccaggagaccttcatcaca
aattaacttgttgcacttctgtgttggacttctggactccagaatgtgag
agtagaattttctggaatatagagagtcttactatgacattcttttatga
tagtgagagcacacagttagacatggggtaagggaaaatgatccctcctc
aactgacagatcgcagtatgaacttgcatgtccaagggaaggttaggctt
ctgggagttctttggagaaacagaaacctgccgaaacacagaattccagg
cttccct

gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
gccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
acatgctggcgaggatgtggagaaagaggaacgctcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcattctggcggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaactggtaagaagaacacatgctcaactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacccaatg
gaatactactcagctattaaaaaatgaatttatgaaattcctaggcaaat
ggatggacctggtgggtatcatgctgagtgaagtaacccaatcacaaagg
aactcacacaatatgtactcactgataagtggatattagcccagaaactt
aggatacccaagatataagatacaacttgccaaacgcatgaaattcaaga
agaacgaagaccaaagtgtggacactttaccctttcttagaaatgggaac
aaaacacccatggaaggagttacagagacaaaatttggagctgtgacgaa
aggatggaccatctagtggttgccatatgcagggatccatcccataatca
atttccaaatgcttacaccattgcatacactagcaagattttgctgaaag
gacccagatatagctctctcttgtgagactatgccaggtcctagcaaaca
cagaagtggatgatcacagtcagctattggatgggttacacggcccccaa
tgggggagctagagaaattacccaaggagctaaagggaactgcaacccta
tagtggaacacatattgaactaatcaatacccagagctcttgtctttagc
tgcaatatgttatcaaagaatggcctagtcggccatcactgccaaagaga
aggcccaattggactttgccaaccttcctttggccagtacaggaacgcgt
cagggccaaaaaaagggcgaaatatgtggatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_105907900_105909045
seq2: B6Ng01-281C15.b_42_1198

seq1  GAATTCTTTCCCATGCTCATTAATCATTAATGGGTTCTTATGTATGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCATGCTCATTAATCATTAATGGGTTCTTATGTATGCTGA  50

seq1  ATAATTATTCTTTCTTGATTCAGGTCATTGGAAGTGAATTCTACAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATTCTTTCTTGATTCAGGTCATTGGAAGTGAATTCTACAAATAT  100

seq1  ATGGTTTATCTTTTCATTTTTATATTATCTTTTCACTTAGTTATGATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTATCTTTTCATTTTTATATTATCTTTTCACTTAGTTATGATCTT  150

seq1  CAAATTTTCAGGTATAGATAATTATTGATAATAAATTAAATCACACATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTCAGGTATAGATAATTATTGATAATAAATTAAATCACACATGG  200

seq1  AAAATTTTCAGGTAATGACAGTTTTCCTAACTGATATTTGTTGTGTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTCAGGTAATGACAGTTTTCCTAACTGATATTTGTTGTGTCAAA  250

seq1  TAATCAATCAGTTAATTAATGTAAATGAGCAATGAATTGAATAATTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAATCAGTTAATTAATGTAAATGAGCAATGAATTGAATAATTAAAA  300

seq1  TATGAAGTTGAACATCTCCAGCATGTTCCAAAGTGGAATATCACTTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGTTGAACATCTCCAGCATGTTCCAAAGTGGAATATCACTTTACA  350

seq1  GAGTTCTCCTGTGGGGAAGAAAGCAAATAACAGAGAAACTGAAGGAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTCCTGTGGGGAAGAAAGCAAATAACAGAGAAACTGAAGGAGTTC  400

seq1  TATGCAACCTGGAGGATGACATTGGCCTAGTAGAATGTGACTTTAGAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAACCTGGAGGATGACATTGGCCTAGTAGAATGTGACTTTAGAGTA  450

seq1  ATGTTTGTTTGCCTTTCTAAAGCTGAACTGAGCATCCAAAGTGAGAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTTTGCCTTTCTAAAGCTGAACTGAGCATCCAAAGTGAGAGGGA  500

seq1  CACAGTGCACACCGAAATAAACTGAGCATACATAGTGAAAGCCTACCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGCACACCGAAATAAACTGAGCATACATAGTGAAAGCCTACCAGG  550

seq1  AACATAGAAATTTTTTTCAGCGCTTAGATTTCTAGGAGGCTAAATTATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGAAATTTTTTTCAGCGCTTAGATTTCTAGGAGGCTAAATTATAG  600

seq1  AGACATCCAGAGACAAGAGTACTCACATGAAACTTTGAAAGATGTGTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCCAGAGACAAGAGTACTCACATGAAACTTTGAAAGATGTGTTCA  650

seq1  GAAAATAGCATGAAATAATGACACTGTTACCATACCAAAAATAATTGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGCATGAAATAATGACACTGTTACCATACCAAAAATAATTGAAC  700

seq1  CCCGTCTCCAATTCTTATGTTTAAAATCTAGTTTCCTATTTTTGGTAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTCTCCAATTCTTATGTTTAAAATCTAGTTTCCTATTTTTGGTAAGA  750

seq1  ACCTTCAATGCCATGAGAATGAACAGTATCATGAGTATGGTGGACACTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAATGCCATGAGAATGAACAGTATCATGAGTATGGTGGACACTCA  800

seq1  CATAAAGGAATCTGTGACTACTATAGAAGAAATAGTGGTGCCAGCAAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGGAATCTGTGACTACTATAGAAGAAATAGTGGTGCCAGCAAACT  850

seq1  CCCATTCTCCCTACCCTATAACTCTACAATTCCAGGAGACCTTCATCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCTCCCTACCCTATAACTCTACAATTCCAGGAGACCTTCATCACA  900

seq1  AATTAACTTGTTGCACTTCTGTGTTGGACTTCTGGACTCCAGAATGTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACTTGTTGCACTTCTGTGTTGGACTTCTGGACTCCAGAATGTGAG  950

seq1  AGTAGAATTTTCTGGAATATAGAGAGTCTTACTATGACATTCTTTTATGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAATTTTCTGGAATATAGAGAGTCTTACTATGACATTCTTTTATGA  1000

seq1  TAGTGAGAGCACACAGTAAGACATGGGGTAA-GGAAAATGATCCCTCTCC  1049
      ||||||||||||||||| ||||||||||||| |||||||||||||||  |
seq2  TAGTGAGAGCACACAGTTAGACATGGGGTAAGGGAAAATGATCCCTCCTC  1050

seq1  AACTGACAGATCGCAGTATGAAC-TGCATGTCCAAGGAAGGGTAAGGCTT  1098
      ||||||||||||||||||||||| ||||||||||||| | ||| ||||||
seq2  AACTGACAGATCGCAGTATGAACTTGCATGTCCAAGGGAAGGTTAGGCTT  1100

seq1  CT-GGAGGTCTTTGGAG--ACAG-AACCTGC--GAACACAGA---TCAAG  1139
      || |||| |||||||||  |||| |||||||   ||||||||    || |
seq2  CTGGGAGTTCTTTGGAGAAACAGAAACCTGCCGAAACACAGAATTCCAGG  1150

seq1  CTTCCCT  1146
      |||||||
seq2  CTTCCCT  1157


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