BAC Information

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BAC

Clone NameB6Ng01-281D03
Chromosome1 (Build37)
Map Location 37,800,410 - 37,800,846
singlet/doubletsinglet
Overlap genenone
Upstream gene4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik
Downstream geneTsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123, Aff3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281D03.bB6Ng01-281D03.g
ACCGA080734GA080735
length4611,180
definitionB6Ng01-281D03.b B6Ng01-281D03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
actgaatcatcaaggagtaatctaaaggtctcttattttccagctctcac
acctacatagagcttcctggtccttattttgttttattttattttatttt
attttattttattttacttctgttttagttttttttctttcatcagtttt
tctatgcactttacatccccatctcaaccctgcctccctcctctctctct
tccctgtctcactcccacaaaccacttctcccattacctcctcccccttc
tcactcccccatgggtaacagcttgccctggtacatcacatcatagcaga
actaagcacatcttctcccactgaggcctgaccaagcagtctagctaggg
agaagggatccaaggcagacagtagtcagagacagcccctgctccaactg
ttaggggacccataggaaaaatcaagctgcacacctgctacaaatgtgtg
tgtgtgtgtgt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactatggaaatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtattcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtgaacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagataa
aaggatggaccatgtagacactagcatatccggggatccatcccataatc
agcttccaaatgctgacaccattgcatacactagcaagattatgctgaaa
ggaccctgatatagctgtctcttgtcagagtatgcctgggcctagcaaac
atagaagtggatgctcacagtcggcttattggatggatcacatggccccc
aatgaaggagctagagaaagtaccaaagagctaaagggatctgcacccta
tagtgacaacattatgaactaaccagtaccccgagctctgactctagctg
catattgcatcaaaagatgcttagtcgcatcacttgaaagaagagtccat
tgtaaccgctaactttaatgccagttccggatacgtcaagggtcataaaa
gggaagattgtcgtcgtgtctactgtgcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_37800410_37800846
seq2: B6Ng01-281D03.b_426_511 (reverse)

seq1  ACACACACACACACACATCACCGGACTGTGTAGTTACTAGAGTGTGTTTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAATGGCACTACAATACATCCAGCAGCTGTACTGAAGTCCATGTGAACCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  CAGTTTTAACTGTTCACTCACTCTTTGCTGGGGTCCTCACAATGGCCAGG  150
                                                        
seq2  --------------------------------------------------  0

seq1  CCTGCCTGGATTTCAGTATGAGTTAGCCTGCCTTTGATGTACAATTCTCA  200
                                                        
seq2  --------------------------------------------------  0

seq1  GCTTCTCAGGATGTGTTGTGTTCTTCCATTGTTATCCTGTTGTGACTCTC  250
                                                        
seq2  --------------------------------------------------  0

seq1  CCTTCAGATCTGCCTTTACCTCTCACTGTGAGGACCCACAGTTTGCTTTT  300
                                                        
seq2  --------------------------------------------------  0

seq1  TGTTTTTGTTGGTTGGTTGCATAAACCATGATATGGCCTTGTTAAATCTA  350
                         || | ||                 | |   |
seq2  ------------------ACACACAC-----------------ACACACA  15

seq1  TGTTTATTTATGAGGGAAATACCTTGATCTGCATTTAGGATGCTTTAGTG  400
        ||  | ||  |||     | ||||||               |||  | 
seq2  CATT--TGTAGCAGGTGTGCAGCTTGAT--------------TTTTCCTA  49

seq1  TAGATCTCTTAACAATTGGAACAGGGGCTGTCTCTGA  437
      | | || | ||||| ||||| ||||||||||||||||
seq2  TGGGTCCCCTAACAGTTGGAGCAGGGGCTGTCTCTGA  86