BAC Information

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BAC

Clone NameB6Ng01-281D08
Chromosome1 (Build37)
Map Location 103,559,558 - 103,741,971
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041909, LOC100040993, LOC383650
Downstream geneLOC100041056, LOC100041067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281D08.bB6Ng01-281D08.g
ACCGA080744GA080745
length5091,095
definitionB6Ng01-281D08.b B6Ng01-281D08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,741,457 - 103,741,971)(103,559,558 - 103,560,665)
sequence
tgacattcctaacaataggagcaagaatgtctctgacacatttgtctgca
cttgtgaccctttcctcatgttgggttgccttgtccagcctctatatgaa
atctttccctttgtcttgttttatcttgttttgtcctatttggctgtcat
tcttggtggactgttttgtgttgttgttgttgttgttgttgttgttgttg
ttgtttcagctttggcagaggaagcatagttgggtttgatctgagggcgg
ttattggtggaatgggcaaccaggaagagttgagtgagaggaaacagtgt
tctagatgtattctatgagaagaatctattttcaatataagtaaataaaa
attaagctatgctaaaagtagaaatgcccctgatggatcttgttcataag
ttttaatattatacatccgctctataatgctcactctatgccagacaatc
cctagtagcatgtgtcacataatgacactgtgtgatccttgcccatactg
gtggctttg

gaattcaccattaggatatagacacacatgtacacacacacacacacaca
cacacacacacacacacacacacacacacacatacttattgctggttttt
gaaagcagcatgaatttgaactcagggtctcatgttgtcacagcagtatt
ttacccactgaatgatttccccagacagatttatttttagtaagcagaac
atctacctttcagtttctctgattcatgtagccatctttgattcactcag
ccatcagttgctctgattactgtgaacagaagtatcaattaaatactttc
aattacttcatcaatttttactaccctttttatgaatctcctccctacct
tggcatcctcacactctcatttcttcactgaaaccaccttggttgtgttc
aaaggatcagagaaagttaattaaaatattatctttgaggtccaagaaag
gttaggagtaaacaagaatcaggtttgacatccagaataaagttgtggat
tttgaagccataattgatacttaaccaatatccctcaaaattatatatga
aaatggaaagtaagaattcttcgatattgaagttcatttacttataaatt
ttgtatttatttatccattggggagaaaaacaccaatgctataatatgcc
tgtgtagttcagagaacagcttgtaagaaatcatttctcttcttcaactt
tgtgggtttggggatagaactcagatcatcatctctggtagcaaacacca
tctaagatgttgttattcgcttaaaattaatgaaagtctgttttgaaaac
agtggtgtcttaaatgaattttcaacagcaagtattcaagggtttaactg
aggggacttaatttagtttttcctaaattaagagaccttgtccttatgtc
cctaaacttctcaaattcgttctaaactagatataatatgaggaaatggt
gaggaaatacatacatttattgtccccagtagtctgtgccttgatcacat
atgtgcagatgtaaatgctgagtcagtctttcttgcatgtcatctgcatc
tttctgttttctgttccttctatataataagtatggaatttacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_103741457_103741971
seq2: B6Ng01-281D08.b_44_558 (reverse)

seq1  CAAAGCCACCAGTATGGGCAAGGATCACACAGTGTCATTATGTGACACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCACCAGTATGGGCAAGGATCACACAGTGTCATTATGTGACACAT  50

seq1  GCTACTAGGGATTGTCTGGCATAGAGTGAGCATTATAGAGCGGATGTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTAGGGATTGTCTGGCATAGAGTGAGCATTATAGAGCGGATGTATA  100

seq1  ATATTAAAACTTATGAACAAGATCCATCAGGGGCATTTCTACTTTTAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAACTTATGAACAAGATCCATCAGGGGCATTTCTACTTTTAGCA  150

seq1  TAGCTTAATTTTTATTTACTTATATTGAAAATAGATTCTTCTCATAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTAATTTTTATTTACTTATATTGAAAATAGATTCTTCTCATAGAAT  200

seq1  ACATCTAGAACACTGTTTCCTCTCACTCAACTCTTCCTGGTTGCCCATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTAGAACACTGTTTCCTCTCACTCAACTCTTCCTGGTTGCCCATTC  250

seq1  CACCAATAACCGCCCTCAGATCAAACCCAACTATGCTTCCTCTGCCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATAACCGCCCTCAGATCAAACCCAACTATGCTTCCTCTGCCAAAG  300

seq1  CTGAAACAACAACAACAACAACAACAACAACAACAACAACACAAAACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACAACAACAACAACAACAACAACAACAACAACAACACAAAACAGT  350

seq1  CCACCAAGAATGACAGCCAAATAGGACAAAACAAGATAAAACAAGACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAGAATGACAGCCAAATAGGACAAAACAAGATAAAACAAGACAAA  400

seq1  GGGAAAGATTTCATATAGAGGCTGGACAAGGCAACCCAACATGAGGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGATTTCATATAGAGGCTGGACAAGGCAACCCAACATGAGGAAAG  450

seq1  GGTCACAAGTGCAGACAAATGTGTCAGAGACATTCTTGCTCCTATTGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAAGTGCAGACAAATGTGTCAGAGACATTCTTGCTCCTATTGTTA  500

seq1  GGAATGTCAGAATTC  515
      |||||||||||||||
seq2  GGAATGTCAGAATTC  515


seq1: chr1_103559558_103560665
seq2: B6Ng01-281D08.g_65_1159

seq1  GAATTCACCATTAGGATATAGACACACATGTACACACACACACACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATTAGGATATAGACACACATGTACACACACACACACACACA  50

seq1  CACACACACACACACACACACACACACACACATACTTATTGCTGGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACATACTTATTGCTGGTTTTT  100

seq1  GAAAGCAGCATGAATTTGAACTCAGGGTCTCATGTTGTCACAGCAGTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGCATGAATTTGAACTCAGGGTCTCATGTTGTCACAGCAGTATT  150

seq1  TTACCCACTGAATGATTTCCCCAGACAGATTTATTTTTAGTAAGCAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCACTGAATGATTTCCCCAGACAGATTTATTTTTAGTAAGCAGAAC  200

seq1  ATCTACCTTTCAGTTTCTCTGATTCATGTAGCCATCTTTGATTCACTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCTTTCAGTTTCTCTGATTCATGTAGCCATCTTTGATTCACTCAG  250

seq1  CCATCAGTTGCTCTGATTACTGTGAACAGAAGTATCAATTAAATACTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGTTGCTCTGATTACTGTGAACAGAAGTATCAATTAAATACTTTC  300

seq1  AATTACTTCATCAATTTTTACTACCCTTTTTATGAATCTCCTCCCTACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTCATCAATTTTTACTACCCTTTTTATGAATCTCCTCCCTACCT  350

seq1  TGGCATCCTCACACTCTCATTTCTTCACTGAAACCACCTTGGTTGTGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCCTCACACTCTCATTTCTTCACTGAAACCACCTTGGTTGTGTTC  400

seq1  AAAGGATCAGAGAAAGTTAATTAAAATATTATCTTTGAGGTCCAAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATCAGAGAAAGTTAATTAAAATATTATCTTTGAGGTCCAAGAAAG  450

seq1  GTTAGGAGTAAACAAGAATCAGGTTTGACATCCAGAATAAAGTTGTGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGAGTAAACAAGAATCAGGTTTGACATCCAGAATAAAGTTGTGGAT  500

seq1  TTTGAAGCCATAATTGATACTTAACCAATATCCCTCAAAATTATATATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGCCATAATTGATACTTAACCAATATCCCTCAAAATTATATATGA  550

seq1  AAATGGAAAGTAAGAATTCTTCGATATTGAAGTTCATTTACTTATAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAAAGTAAGAATTCTTCGATATTGAAGTTCATTTACTTATAAATT  600

seq1  TTGTATTTATTTATCCATTGGGGAGAAAAACACCAATGCTATAATATGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTATTTATCCATTGGGGAGAAAAACACCAATGCTATAATATGCC  650

seq1  TGTGTAGTTCAGAGAACAGCTTGTAAGAAATCATTTCTCTTCTTCAACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGTTCAGAGAACAGCTTGTAAGAAATCATTTCTCTTCTTCAACTT  700

seq1  TGTGGGTTTGGGGATAGAACTCAGATCATCATCTCTGGTAGCAAACACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTTTGGGGATAGAACTCAGATCATCATCTCTGGTAGCAAACACCA  750

seq1  TCTAAGATGTTGTTATTCGCTTAAAATTAATGAAAGTCTGTTTTGAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGATGTTGTTATTCGCTTAAAATTAATGAAAGTCTGTTTTGAAAAC  800

seq1  AGTGGTGTCTTAAATGAATTTTCAACAGCAAGTATTCAAGGGGTTTAACT  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGTGGTGTCTTAAATGAATTTTCAACAGCAAGTATTCAA-GGGTTTAACT  849

seq1  GAGGGGACTTAATTTAG-TTTTCCTAAATTAAGAGACCTTGTCCTTATGT  899
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAGGGGACTTAATTTAGTTTTTCCTAAATTAAGAGACCTTGTCCTTATGT  899

seq1  CCCTAAACTTCTCAAATTCGTTCTAAACTAGATATAAATATGAGGAAATG  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCCTAAACTTCTCAAATTCGTTCTAAACTAGATAT-AATATGAGGAAATG  948

seq1  GTGAGGAAATACAATACA-TTATTGTCCCCAGTAAGTCTGTGCCTTGATC  998
      |||||||||||| ||||| |||||||||||||| ||||||||||||||||
seq2  GTGAGGAAATAC-ATACATTTATTGTCCCCAGT-AGTCTGTGCCTTGATC  996

seq1  ACAATATGTGCAGATTGGTAAATGCTGAAGTTCAGTCTTTCTGCAATGGT  1048
      || ||||||||||||  |||||||||||   |||||||||||   || ||
seq2  AC-ATATGTGCAGAT--GTAAATGCTGA--GTCAGTCTTTCTTGCAT-GT  1040

seq1  CATCTGCATCTTTTCTTGTTTTCTGTTCCTTCTATTATAATAAAGTTAAT  1098
      |||||||||||||   |||||||||||||||||| |||||| ||||  ||
seq2  CATCTGCATCTTT--CTGTTTTCTGTTCCTTCTA-TATAAT-AAGT--AT  1084

seq1  GG-ATTTACCT  1108
      || ||||||||
seq2  GGAATTTACCT  1095


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