BAC Information

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BAC

Clone NameB6Ng01-281D23
Chromosome1 (Build37)
Map Location 106,639,601 - 106,765,398
singlet/doubletdoublet
Overlap geneCdh20
Upstream geneLOC383546, LOC100041134
Downstream geneRnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281D23.bB6Ng01-281D23.g
ACCGA080774GA080775
length1,1251,174
definitionB6Ng01-281D23.b B6Ng01-281D23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,639,601 - 106,640,716)(106,764,228 - 106,765,398)
sequence
gaattcagagatttacctgcctctgcctgccttcataagagtaaaggctt
atgccaccaccacccagctgcctccagtgacttttaaaaaatagttgtat
cttccatccttttacctctctctctactctctatcacctcattcccaact
tcccattaaaacaggaggtaataggtgaaatatatggtttgtcaacaaaa
tattatagtcaagcaaaaagaaaaatagagctctaaaatctatatcaaat
agaattctttcacacacatacacacaaacacgaattggatgcacttaggc
aaatgcagagattgaaacagtgttgggcagtgccacactggcatgctttt
gccatgatggagccctgaacacaaaagaaggcaagcaagctagctgaaaa
gccaaagtaagaagaagccagatcccccaccccaacccccaccccgccct
gtgatccccaactgctttggttttttcattttagagcaggtagcctgcta
gccagcaagctttctagtaaattctaagctggggctcaaaggcaacattg
aagtcattggtgaaacccagagagatttgccaagatcctgcagggcagga
acacatgcaggaaaaacaagctagtactagggtggaggtttattttagag
taattgtctagtgctgtcttggctttctctagagaatgccacgggttgtt
catttgtactgttttctaaaacactaaaaaggcatttaaaaaatgggagt
cattgttccacaagacaaagtacccttgaacaggtttacaacttgtatgc
atattcagaatgtcttcatagatgtagaaacaaacaagccaaagagaggg
agagagggtgaaaggacaaagaggaacagaaggacggagggaggagggag
agaacaaaatgagacaggcaggtaggtaggaagagagagaaagtgagaac
tcctttcagtccaggtcgactgctaacatttaccatcctcattgtcaggt
tcttgaaaacacacgggccacgtaacttctcctaatctgtcacagcaaac
ttgaaagcattcaaaaaattcaattattaatcgaatttccttcaattttt
ttttcctaatagaaagcatattata

gaattccaaccttcacataaccacagaaattatcccctgctggcaaaacc
atgcttctgctcgagtctaaagcaaatcatagtcagctgttggggacagt
ccaaagtaggcccacattcctgaaactgagattgaaatgaaagcatattc
ttataatatttccgtgtttattaagaaaccaaaattcctgaaatctgaaa
gtagtcactacaccctttcatacaactcatacccaccactctccttatgg
cgaaggaagcctcagaagcatgcttccttcctgctcccttctttgagctt
tccatgttttagttgagatctgcatctctgtcagtcttactgcatctgat
agcactttgtgctctctgttggagtgcaaatttgaagagtaggctgagtt
ttcattattccttctgtgattccctctcccacaatttcccatcacaatac
tggaaagaaagcaggtactcctctgctttgaatataaagctggtatattg
atacatttctactcaattttaatgtcattcaaattttaatttatattgag
aaggtatcttgacagagttttgatatttgcctttgcaaaccagagagctg
gagcgaagtttgagatcactcaggtatacattgtctatagtatgatccat
aggccaaggcaggtatgacttgggcactggtgcagtaaagaagtacagag
atggagagcctttagagacttttatgatattttgacaccgctataacatc
caattttttctagcattttatatgtacagtattacattgcatacatgaaa
ttgtggtgctattttcaaccttttcagagaagcaagacagcactgtgggg
aagctccagactctagagttgggctatcttgggaatcttcctttctctgc
tttttaggcaggtgatcttggaaaattaacttccattccccagctttatc
atttgtaaatggactacatcaatggcagtatttctttggctattcattag
catcatatttgaaagaagaatggctgggctatgcatgcatttttaagcta
tatcctttttttactgatgaaactggattgaatagtaaagattgcctact
taaggtgcagagcttctcaatagaccttgtcatgtctactcatgctctct
ctctaatcttcaaagcccccttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_106639601_106640716
seq2: B6Ng01-281D23.b_42_1166

seq1  GAATTCAGAGATTTACCTGCCTCTGCCTGCCTTCATAAGAGTAAAGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGATTTACCTGCCTCTGCCTGCCTTCATAAGAGTAAAGGCTT  50

seq1  ATGCCACCACCACCCAGCTGCCTCCAGTGACTTTTAAAAAATAGTTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACCACCACCCAGCTGCCTCCAGTGACTTTTAAAAAATAGTTGTAT  100

seq1  CTTCCATCCTTTTACCTCTCTCTCTACTCTCTATCACCTCATTCCCAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATCCTTTTACCTCTCTCTCTACTCTCTATCACCTCATTCCCAACT  150

seq1  TCCCATTAAAACAGGAGGTAATAGGTGAAATATATGGTTTGTCAACAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTAAAACAGGAGGTAATAGGTGAAATATATGGTTTGTCAACAAAA  200

seq1  TATTATAGTCAAGCAAAAAGAAAAATAGAGCTCTAAAATCTATATCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAGTCAAGCAAAAAGAAAAATAGAGCTCTAAAATCTATATCAAAT  250

seq1  AGAATTCTTTCACACACATACACACAAACACGAATTGGATGCACTTAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTTTCACACACATACACACAAACACGAATTGGATGCACTTAGGC  300

seq1  AAATGCAGAGATTGAAACAGTGTTGGGCAGTGCCACACTGGCATGCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGAGATTGAAACAGTGTTGGGCAGTGCCACACTGGCATGCTTTT  350

seq1  GCCATGATGGAGCCCTGAACACAAAAGAAGGCAAGCAAGCTAGCTGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGATGGAGCCCTGAACACAAAAGAAGGCAAGCAAGCTAGCTGAAAA  400

seq1  GCCAAAGTAAGAAGAAGCCAGATCCCCCACCCCAACCCCCACCCCGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGTAAGAAGAAGCCAGATCCCCCACCCCAACCCCCACCCCGCCCT  450

seq1  GTGATCCCCAACTGCTTTGGTTTTTTCATTTTAGAGCAGGTAGCCTGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCCCCAACTGCTTTGGTTTTTTCATTTTAGAGCAGGTAGCCTGCTA  500

seq1  GCCAGCAAGCTTTCTAGTAAATTCTAAGCTGGGGCTCAAAGGCAACATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCAAGCTTTCTAGTAAATTCTAAGCTGGGGCTCAAAGGCAACATTG  550

seq1  AAGTCATTGGTGAAACCCAGAGAGATTTGCCAAGATCCTGCAGGGCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATTGGTGAAACCCAGAGAGATTTGCCAAGATCCTGCAGGGCAGGA  600

seq1  ACACATGCAGGAAAAACAAGCTAGTACTAGGGTGGAGGTTTATTTTAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCAGGAAAAACAAGCTAGTACTAGGGTGGAGGTTTATTTTAGAG  650

seq1  TAATTGTCTAGTGCTGTCTTGGCTTTCTCTAGAGAATGCCACGGGTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTCTAGTGCTGTCTTGGCTTTCTCTAGAGAATGCCACGGGTTGTT  700

seq1  CATTTGTACTGTTTTCTAAAACACT-AAAAGGCATTTAAAAAATGGGAGT  749
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CATTTGTACTGTTTTCTAAAACACTAAAAAGGCATTTAAAAAATGGGAGT  750

seq1  CATTGTTCCACAAGACAAAGTACCCTTGAACAGGTTTACAACTTGTATGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTCCACAAGACAAAGTACCCTTGAACAGGTTTACAACTTGTATGC  800

seq1  ATATTCAGAATGTCTTCATAGATGTAGAAACAAACAAGCCAAAGAGAGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAGAATGTCTTCATAGATGTAGAAACAAACAAGCCAAAGAGAGGG  850

seq1  AGAGAGGGTGAAAGGACAAAGAGGAACAGAAGGACGGAGGGAGGAGGGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGTGAAAGGACAAAGAGGAACAGAAGGACGGAGGGAGGAGGGAG  900

seq1  AGAACAAAATGAGACAGGCAGGTAGGTAGGAAGAGAGAGAAAGTGAG-AC  948
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGAACAAAATGAGACAGGCAGGTAGGTAGGAAGAGAGAGAAAGTGAGAAC  950

seq1  TCC-TTCAGTCCAGGTCCACTGCTAACATTTACCATCCTCATTTGTCA-G  996
      ||| ||||||||||||| ||||||||||||||||||||||| |||||| |
seq2  TCCTTTCAGTCCAGGTCGACTGCTAACATTTACCATCCTCA-TTGTCAGG  999

seq1  TTCCTG-AAACACAC-GGCCACCTTACTTCTCCTATTCTGTCACAGCAAA  1044
      ||| || |||||||| |||||| | |||||||||| ||||||||||||||
seq2  TTCTTGAAAACACACGGGCCACGTAACTTCTCCTAATCTGTCACAGCAAA  1049

seq1  CCTG-AAGCATTC-AAAAATTCCATTATTAATCGAATTTCTTTCA---TT  1089
      | || |||||||| |||||||| ||||||||||||||||| ||||   ||
seq2  CTTGAAAGCATTCAAAAAATTCAATTATTAATCGAATTTCCTTCAATTTT  1099

seq1  TTTTTTCTTATAGAAAGCATATATATA  1116
      ||||| || ||||||||||||| ||||
seq2  TTTTTCCTAATAGAAAGCATAT-TATA  1125


seq1: chr1_106764228_106765398
seq2: B6Ng01-281D23.g_64_1237 (reverse)

seq1  GGAAGGAGGGGCTTGAGG----TAGAGAGAGGAAGAGTAGACATGACAA-  45
      |||||| |||  |||| |     |||||||| | ||||||||||||||| 
seq2  GGAAGG-GGGCTTTGAAGATTAGAGAGAGAGCATGAGTAGACATGACAAG  49

seq1  GTCTA-TGAGAAGCTCTGCAACCTTAGGTA-GCCATCTTTACTATCCAAA  93
      ||||| ||||||||||||| |||||| ||| || ||||||||||| | ||
seq2  GTCTATTGAGAAGCTCTGC-ACCTTAAGTAGGCAATCTTTACTATTC-AA  97

seq1  TCCAGTTTTCATCAGT-AAAAAAGGATAATAGCCTAAAAATGCCATGCAT  142
      ||||| |||||||||| |||||||||| ||||| |||||||| |||||||
seq2  TCCAG-TTTCATCAGTAAAAAAAGGAT-ATAGCTTAAAAATG-CATGCAT  144

seq1  AG-CCAGCCATTC-TCTTTCAAATATGATGCTAATGAATAGCCAAAGAAA  190
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGCCATTCTTCTTTCAAATATGATGCTAATGAATAGCCAAAGAAA  194

seq1  TACTGCCATTGATGTAGTCCATTTTACAAATGATAAAGCTGGGGAATGGA  240
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TACTGCCATTGATGTAGTCCA-TTTACAAATGATAAAGCTGGGGAATGGA  243

seq1  AGTTAATTTTCCAAGATCACCTGCCTAAAAAGCAGAGAAAGGAAGATTCC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATTTTCCAAGATCACCTGCCTAAAAAGCAGAGAAAGGAAGATTCC  293

seq1  CAAGATAGCCCAACTCTAGAGTCTGGAGCTTCCCCACAGTGCTGTCTTGC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAGCCCAACTCTAGAGTCTGGAGCTTCCCCACAGTGCTGTCTTGC  343

seq1  TTCTCTGAAAAGGTTGAAAATAGCACCACAATTTCATGTATGCAATGTAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGAAAAGGTTGAAAATAGCACCACAATTTCATGTATGCAATGTAA  393

seq1  TACTGTACATATAAAATGCTAGAAAAAATTGGATGTTATAGCGGTGTCAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTACATATAAAATGCTAGAAAAAATTGGATGTTATAGCGGTGTCAA  443

seq1  AATATCATAAAAGTCTCTAAAGGCTCTCCATCTCTGTACTTCTTTACTGC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATAAAAGTCTCTAAAGGCTCTCCATCTCTGTACTTCTTTACTGC  493

seq1  ACCAGTGCCCAAGTCATACCTGCCTTGGCCTATGGATCATACTATAGACA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGCCCAAGTCATACCTGCCTTGGCCTATGGATCATACTATAGACA  543

seq1  ATGTATACCTGAGTGATCTCAAACTTCGCTCCAGCTCTCTGGTTTGCAAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATACCTGAGTGATCTCAAACTTCGCTCCAGCTCTCTGGTTTGCAAA  593

seq1  GGCAAATATCAAAACTCTGTCAAGATACCTTCTCAATATAAATTAAAATT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATATCAAAACTCTGTCAAGATACCTTCTCAATATAAATTAAAATT  643

seq1  TGAATGACATTAAAATTGAGTAGAAATGTATCAATATACCAGCTTTATAT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGACATTAAAATTGAGTAGAAATGTATCAATATACCAGCTTTATAT  693

seq1  TCAAAGCAGAGGAGTACCTGCTTTCTTTCCAGTATTGTGATGGGAAATTG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCAGAGGAGTACCTGCTTTCTTTCCAGTATTGTGATGGGAAATTG  743

seq1  TGGGAGAGGGAATCACAGAAGGAATAATGAAAACTCAGCCTACTCTTCAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAGGGAATCACAGAAGGAATAATGAAAACTCAGCCTACTCTTCAA  793

seq1  ATTTGCACTCCAACAGAGAGCACAAAGTGCTATCAGATGCAGTAAGACTG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCACTCCAACAGAGAGCACAAAGTGCTATCAGATGCAGTAAGACTG  843

seq1  ACAGAGATGCAGATCTCAACTAAAACATGGAAAGCTCAAAGAAGGGAGCA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATGCAGATCTCAACTAAAACATGGAAAGCTCAAAGAAGGGAGCA  893

seq1  GGAAGGAAGCATGCTTCTGAGGCTTCCTTCGCCATAAGGAGAGTGGTGGG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGCATGCTTCTGAGGCTTCCTTCGCCATAAGGAGAGTGGTGGG  943

seq1  TATGAGTTGTATGAAAGGGTGTAGTGACTACTTTCAGATTTCAGGAATTT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTTGTATGAAAGGGTGTAGTGACTACTTTCAGATTTCAGGAATTT  993

seq1  TGGTTTCTTAATAAACACGGAAATATTATAAGAATATGCTTTCATTTCAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTTAATAAACACGGAAATATTATAAGAATATGCTTTCATTTCAA  1043

seq1  TCTCAGTTTCAGGAATGTGGGCCTACTTTGGACTGTCCCCAACAGCTGAC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTTTCAGGAATGTGGGCCTACTTTGGACTGTCCCCAACAGCTGAC  1093

seq1  TATGATTTGCTTTAGACTCGAGCAGAAGCATGGTTTTGCCAGCAGGGGAT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTGCTTTAGACTCGAGCAGAAGCATGGTTTTGCCAGCAGGGGAT  1143

seq1  AATTTCTGTGGTTATGTGAAGGTTGGAATTC  1171
      |||||||||||||||||||||||||||||||
seq2  AATTTCTGTGGTTATGTGAAGGTTGGAATTC  1174


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