BAC Information

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BAC

Clone NameB6Ng01-281E06
Chromosome1 (Build37)
Map Location 115,683,069 - 115,684,230
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281E06.bB6Ng01-281E06.g
ACCGA080788GA080789
length1,2251,155
definitionB6Ng01-281E06.b B6Ng01-281E06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtattcaacatcaaagtaaattgtgagatgctggaagcaattccactaaa
atcagggactagaaaaggctgcccactttctccctatctcttcaacatag
tacttgaagtcctagccagagcaattagacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactctttgcagatgatat
gatagcatatataagtgaccctaaacattctaccagagaactcctaaacc
tgataaacagcttctgtgatgtagctggatataaaattaactcaaacaag
tcaatagcctttctccacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaaagaagtgaaagatctgtatgataagaacttcaagtct
ctgaagaaagaaattgaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggccatcatgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aatgaattagaaagagcaatctgcaaattcatctggaataacaaaaaaac
ctaggatagcaaaaactcttctcaaggataaaagaacctctggtgtaatc
accatgcctaacctaaagctttagtacagagcaattgtgataaaactaca
tggtactggtatagagacagacaagtagaccaatggaaaagaattgaaga
cccagaaattaacccacacacttatggtcacttgatcttcgacaagggag
ctaaaaccatcaagtggaagaaagacagcattttcagcaaatggtgctgg
cacactgggttgttaacattcagaagtatgctaatcggtccatgcctatt
atcctttgtactaatgtcaaatctaagtgatcaaggaacttcacatacac
caggagacactgaaactattagagaagaaagtggggacaaggcctcgaga
attgtgccacaggggcaaaatccttgaatgaacagcaattgcttgtgctg
gtatatgaaattggacaagtgggaactcatgaactgtccaaaagcctctc
tctggtttaaggcccataaggaaca

gaattccattttgttatccatttatctgtacttgtgtttttatttctgta
aagacttaaagattaagaattaaatactgaattttaagaaataaacatct
aaataatataaaaatgttatagtattgaaaaaatatgattgagcaatctt
tatcagcacatcgtattctaaactgttagtttgcttacattccagctcct
gccaaacactgtcctatttcatgcatctatgactttgtcattgcaaaaaa
tgttgatgtatgggaatggggttgtagacagaagcataaaagctggtgat
aacaactatagtggctaacaaagagaagtggcactttagaaattcagagg
tttatgaagtgctgttattttaagtgtgtgcaaagcacatatatgtacat
atatgtggtgactagagatcaaactcagatataattttcaagagctatac
atcttgttctttgagacagactctcccatgctttgaacacacaaaacagg
ctaaggctggctggccagtgagtctcagtgatctttctgtctcttcctct
actagtgctggttttccaagtgtgtattatgatccctggctatattttgg
gagctcaatctaggtctttgtgattgcactataaacacttacctgactaa
gccatcttcatagccctaaatagatgcatacatgaggcacattactacat
aggcagctaagctgagcttcattatgatgtactgcaacaattacagttag
aaatgaaggtgcttagcaacagcctggtcttgtcctcagttggattttct
taaggacaaccatccattcaaagcatctctctctgatacatgagcagtgc
aaaatctttgacaactctttgaagctgtctgatcctttttgggcaaggaa
ctatcatcctttgatctttgctgaccatggagaggaaagggcccaaatat
tgactattctttcatctcttttattctttgagattcagcctccttgcttt
ggtggtttaccacttagacagtgtcttaaaaagtaagtaatggttttagt
ttagtttttatgtacatttagacaaaacttgacacaaaacaaaaatattt
ttggaataattcattgtagacctgttaagttacttcaagtagttagttac
aaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_115683069_115684230
seq2: B6Ng01-281E06.g_68_1222

seq1  GAATTCCATTTTGTTATCCATTTATCTGTACTTGTGTTTTTATTTCTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTTGTTATCCATTTATCTGTACTTGTGTTTTTATTTCTGTA  50

seq1  AAGACTTAAAGATTAAGAATTAAATACTGAATTTTAAGAAATAAACATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTAAAGATTAAGAATTAAATACTGAATTTTAAGAAATAAACATCT  100

seq1  AAATAATATAAAAATGTTATAGTATTGAAAAAATATGATTGAGCAATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATAAAAATGTTATAGTATTGAAAAAATATGATTGAGCAATCTT  150

seq1  TATCAGCACATCGTATTCTAAACTGTTAGTTTGCTTACATTCCAGCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCACATCGTATTCTAAACTGTTAGTTTGCTTACATTCCAGCTCCT  200

seq1  GCCAAACACTGTCCTATTTCATGCATCTATGACTTTGTCATTGCAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACACTGTCCTATTTCATGCATCTATGACTTTGTCATTGCAAAAAA  250

seq1  TGTTGATGTATGGGAATGGGGTTGTAGACAGAAGCATAAAAGCTGGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATGTATGGGAATGGGGTTGTAGACAGAAGCATAAAAGCTGGTGAT  300

seq1  AACAACTATAGTGGCTAACAAAGAGAAGTGGCACTTTAGAAATTCAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTATAGTGGCTAACAAAGAGAAGTGGCACTTTAGAAATTCAGAGG  350

seq1  TTTATGAAGTGCTGTTATTTTAAGTGTGTGCAAAGCACATATATGTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAAGTGCTGTTATTTTAAGTGTGTGCAAAGCACATATATGTACAT  400

seq1  ATATGTGGTGACTAGAGATCAAACTCAGATATAATTTTCAAGAGCTATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGGTGACTAGAGATCAAACTCAGATATAATTTTCAAGAGCTATAC  450

seq1  ATCTTGTTCTTTGAGACAGACTCTCCCATGCTTTGAACACACAAAACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTTCTTTGAGACAGACTCTCCCATGCTTTGAACACACAAAACAGG  500

seq1  CTAAGGCTGGCTGGCCAGTGAGTCTCAGTGATCTTTCTGTCTCTTCCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCTGGCTGGCCAGTGAGTCTCAGTGATCTTTCTGTCTCTTCCTCT  550

seq1  ACTAGTGCTGGTTTTCCAAGTGTGTATTATGATCCCTGGCTATATTTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGCTGGTTTTCCAAGTGTGTATTATGATCCCTGGCTATATTTTGG  600

seq1  GAGCTCAATCTAGGTCTTTGTGATTGCACTATAAACACTTACCTGACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAATCTAGGTCTTTGTGATTGCACTATAAACACTTACCTGACTAA  650

seq1  GCCATCTTCATAGCCCTAAATAGATGCATACATGAGGCACATTACTACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTTCATAGCCCTAAATAGATGCATACATGAGGCACATTACTACAT  700

seq1  AGGCAGCTAAGCTGAGCTTCATTATGATGTACTGCAACAATTACAGTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCTAAGCTGAGCTTCATTATGATGTACTGCAACAATTACAGTTAG  750

seq1  AAATGAAGGTGCTTAGCAACAGCCTGGTCTTGTCCTCAGTTGGATTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGGTGCTTAGCAACAGCCTGGTCTTGTCCTCAGTTGGATTTTCT  800

seq1  TAAGGACAACCATCCATTCAAAGCATCTCTCTCTGATACATGAGCAGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACAACCATCCATTCAAAGCATCTCTCTCTGATACATGAGCAGTGC  850

seq1  AAAATCTTTGACAACTCTTTGAAGCTGTCTGATCC-TTTTGGGCAAGGAA  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAATCTTTGACAACTCTTTGAAGCTGTCTGATCCTTTTTGGGCAAGGAA  900

seq1  CTATCATCCTTTGATCTTTGCTGACCATGGAGAGG-AAGGGCCCAAATAT  948
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTATCATCCTTTGATCTTTGCTGACCATGGAGAGGAAAGGGCCCAAATAT  950

seq1  TGACTATTCTTTCATCTCTTTTATTCTTTTGAGATTCAGCCTCCTTGCTT  998
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGACTATTCTTTCATCTCTTTTATTC-TTTGAGATTCAGCCTCCTTGCTT  999

seq1  TGGTGGTTTAACACTTAGGACAGTGTCTTAAAAAGTAAGTAATGGGTTTT  1048
      |||||||||| |||||| ||||||||||||||||||||||||| ||||||
seq2  TGGTGGTTTACCACTTA-GACAGTGTCTTAAAAAGTAAGTAAT-GGTTTT  1047

seq1  AGTTTAATTTTTATGTAACATTTAGACAAAACTTGGACA-AAAACAAAAA  1097
      |||||| ||||||||| ||||||||||||||||| |||| ||||||||||
seq2  AGTTTAGTTTTTATGT-ACATTTAGACAAAACTT-GACACAAAACAAAAA  1095

seq1  TATTTTT-GAATATATCAT--GAGA-CTGTTAAGGTTTAATTTCCCAAGT  1143
      ||||||| |||||  ||||   ||| ||||||||  ||| ||   |||||
seq2  TATTTTTGGAATAATTCATTGTAGACCTGTTAAG--TTACTT---CAAGT  1140

seq1  AGTTAAAGTTTAACAAATT  1162
      ||||  ||||  |||||||
seq2  AGTT--AGTT--ACAAATT  1155


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