BAC Information

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BAC

Clone NameB6Ng01-281H01
Chromosome1 (Build37)
Map Location 74,078,454 - 74,079,489
singlet/doubletsinglet
Overlap geneTns1
Upstream genePinc, LOC672208, LOC100043291
Downstream geneRufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281H01.bB6Ng01-281H01.g
ACCGA080918GA080919
length1,0211,034
definitionB6Ng01-281H01.b B6Ng01-281H01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgatcgtgagcccactgtcgtacttctctggctgtgaaatga
gttccttggtcagaagcaatactgtgtggaataccatgacgatagatgag
gcattctgtcagtccgtgaatggtggttttagcagaggcattacgtgcag
gaaaggcaaatccataaccagaataagtatctactccagtaagaacaaaa
cgctgtcctttccacgaaggaagtggtccaatgtagtcaacctgccacca
ggttgctggctggtcacctcgaggaatggtgccatatctggggctcagtg
ttggtttctgctgttggcagatctggcaatcagcagcagctgtagccagg
tcagccttggtgagtggaagcccatgttgctgagcccaagcataacctcc
atctcgaccaccatggccactttgttcatgtgcccattgagcaatgacag
ggatggctggggagagaggctgattgtccacagaacgggtcatcttatcc
acttgattattgaactcctcctcagctgaagtcaccttttggtgagcatt
tacatgggacacaaatatcttcacatcctttgcccattttggagagatct
atccacatacttcttccccagatgtctttctcaccaattttccaattgtg
atctttccaagtccctgaccatccagccaatccattggctacagcccatg
agtcagtgtataatcgtacatctggccatttcttcttgcaaacaaactgt
aataccatgtgtactgcccgaagttcttgcccactgtgaagatttccctt
cacctgtgtctttcaagcgttgtcccagaaaggggtttgttaatgctgca
gctgtccacttctgggtgggtgcctgcataacgtgccagaagccatcagt
gaaccaggctctagtcttctcctcttcggtcagtttgatcatagggaaca
cccatgaaggctataggtgcatgcttgggcagcgatggcattgtaacagg
atgtagaaaccattaggcatt
gaattcattgatttaaagtgctttgatgtataggatgtagatcagctgga
gcaggcttgcatggcatgcacacaactctgggttctttccccagcactgt
gtaaattgggcatggtggtagaaacctttaatcccaacactcgtgaggct
acagatcagtggttcgagatcatctatgactataaagtaagttcaaggtt
agcttgggatacacaaaagcctgtctcaaaaacaaacaaacaaacaaaaa
aacaaacaaacaaacaagcaagcatccaaagcagagaagccaaaggtaat
ccttgtcagtgggtgtcattcattccggagcctgctgcctcttactggtc
ctgttctctttcatcacagttgtgacttccctatcctggatcgagagtgt
aggtcaggcttccacaggcttcctttaggggctgctaatatcagtgtttt
cctttcccaactttgcttctgtctgcagttaggaggcaggcctggagttg
aggggacctcagacttgtctccccagggagctggagcagatatgtgttta
tgtcggactctgagaaagttgccatcgcaagtccctctgggatcccttcc
cacccttcagacagccactgcctgcgttaggaccttccaggcctggcaag
ggcctggtcagcctccctccaaacaggctatccttgactgtagccatagg
aatggcatttatgttttagagtgacattcccaagtaaacactgagctggc
ttagaccctccagggctccttgaagtctacctggcatttctctctacaat
ctaattcagtcccttgttggtaaggggtggggataaccacccaagccctt
tctgtgtatacataagagccgagagctttgaagattggtcagtaggtctc
ctggccacactccattccctctcaggcctctacctctttggggtcatggc
tttctagtgactctgacattcctccacaaaggaccagcctctttggctgc
tcctttacccatagaatccccaccagaaggctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_74078454_74079489
seq2: B6Ng01-281H01.g_65_1098 (reverse)

seq1  TCAGCCTCCTGGGTGGGGA-TCTCTGGGTAAAAGAGCAGGCCAAGAGGCT  49
      ||||||| || |||||||| ||| |||||||| |||||| | ||||||||
seq2  TCAGCCTTCT-GGTGGGGATTCTATGGGTAAAGGAGCAGCCAAAGAGGCT  49

seq1  GGTCCTTGGTGGAGGAATGTCAGAGTCACTAGAAAGCCATGGACCCCAAA  99
      ||||||| |||||||||||||||||||||||||||||||| |||||||||
seq2  GGTCCTTTGTGGAGGAATGTCAGAGTCACTAGAAAGCCAT-GACCCCAAA  98

seq1  GAGGGTAGAGGCCTGAGAGGGAATGGAGTGTGGCCAGGAGACCTACTGAC  149
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GA-GGTAGAGGCCTGAGAGGGAATGGAGTGTGGCCAGGAGACCTACTGAC  147

seq1  CAATCTTCAAAGCTCTCGGCTCTTATGTATACACAGAAAGGGCTTGGGTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTCAAAGCTCTCGGCTCTTATGTATACACAGAAAGGGCTTGGGTG  197

seq1  GTTATCCCCACCCCTTACCAACAAGGGACTGAATTAGATTGTAGAGAGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCCCACCCCTTACCAACAAGGGACTGAATTAGATTGTAGAGAGAA  247

seq1  ATGCCAGGTAGACTTCAAGGAGCCCTGGAGGGTCTAAGCCAGCTCAGTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGGTAGACTTCAAGGAGCCCTGGAGGGTCTAAGCCAGCTCAGTGT  297

seq1  TTACTTGGGAATGTCACTCTAAAACATAAATGCCATTCCTATGGCTACAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGGGAATGTCACTCTAAAACATAAATGCCATTCCTATGGCTACAG  347

seq1  TCAAGGATAGCCTGTTTGGAGGGAGGCTGACCAGGCCCTTGCCAGGCCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGATAGCCTGTTTGGAGGGAGGCTGACCAGGCCCTTGCCAGGCCTG  397

seq1  GAAGGTCCTAACGCAGGCAGTGGCTGTCTGAAGGGTGGGAAGGGATCCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCCTAACGCAGGCAGTGGCTGTCTGAAGGGTGGGAAGGGATCCCA  447

seq1  GAGGGACTTGCGATGGCAACTTTCTCAGAGTCCGACATAAACACATATCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACTTGCGATGGCAACTTTCTCAGAGTCCGACATAAACACATATCT  497

seq1  GCTCCAGCTCCCTGGGGAGACAAGTCTGAGGTCCCCTCAACTCCAGGCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGCTCCCTGGGGAGACAAGTCTGAGGTCCCCTCAACTCCAGGCCT  547

seq1  GCCTCCTAACTGCAGACAGAAGCAAAGTTGGGAAAGGAAAACACTGATAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTAACTGCAGACAGAAGCAAAGTTGGGAAAGGAAAACACTGATAT  597

seq1  TAGCAGCCCCTAAAGGAAGCCTGTGGAAGCCTGACCTACACTCTCGATCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCCCCTAAAGGAAGCCTGTGGAAGCCTGACCTACACTCTCGATCC  647

seq1  AGGATAGGGAAGTCACAACTGTGATGAAAGAGAACAGGACCAGTAAGAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGGGAAGTCACAACTGTGATGAAAGAGAACAGGACCAGTAAGAGG  697

seq1  CAGCAGGCTCCGGAATGAATGACACCCACTGACAAGGATTACCTTTGGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGCTCCGGAATGAATGACACCCACTGACAAGGATTACCTTTGGCT  747

seq1  TCTCTGCTTTGGATGCTTGCTTGTTTGTTTGTTTGTTTTTTTGTTTGTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTTTGGATGCTTGCTTGTTTGTTTGTTTGTTTTTTTGTTTGTTT  797

seq1  GTTTGTTTTTGAGACAGGCTTTTGTGTATCCCAAGCTAACCTTGAACTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTTGAGACAGGCTTTTGTGTATCCCAAGCTAACCTTGAACTTA  847

seq1  CTTTATAGTCATAGATGATCTCGAACCACTGATCTGTAGCCTCACGAGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAGTCATAGATGATCTCGAACCACTGATCTGTAGCCTCACGAGTG  897

seq1  TTGGGATTAAAGGTTTCTACCACCATGCCCAATTTACACAGTGCTGGGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATTAAAGGTTTCTACCACCATGCCCAATTTACACAGTGCTGGGGA  947

seq1  AAGAACCCAGAGTTGTGTGCATGCCATGCAAGCCTGCTCCAGCTGATCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCCAGAGTTGTGTGCATGCCATGCAAGCCTGCTCCAGCTGATCTA  997

seq1  CATCCTATACATCAAAGCACTTTAAATCAATGAATTC  1036
      |||||||||||||||||||||||||||||||||||||
seq2  CATCCTATACATCAAAGCACTTTAAATCAATGAATTC  1034