BAC Information

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BAC

Clone NameB6Ng01-281M22
Chromosome1 (Build37)
Map Location 32,591,714 - 32,730,105
singlet/doubletdoublet
Overlap geneKhdrbs2, EG408191
Upstream geneLOC624275, LOC666056, LOC100041238
Downstream geneEG633498, LOC213711, LOC100040828, EG666108, Prim2, 1700001G17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281M22.bB6Ng01-281M22.g
ACCGA081188GA081189
length1,1761,142
definitionB6Ng01-281M22.b B6Ng01-281M22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,728,937 - 32,730,105)(32,591,714 - 32,592,856)
sequence
gaattctttcaactgctactatctgtgccatacataaaagtattgataaa
acaagtgaagttatttatatacacagaaacaacattgtgttatgtgatcc
attagtttaactgccattttctttacattattaatataagaattatacca
aattactgctggaattacatttattttggcatgtataacatattgatata
gtttatatatcattttataattttttagaatgtaaatagcttatatttcc
cattatttatttgacatatgatgctaaagaataaatatgaaaataaacat
ttcactagtgtgtttagcagtgaatagttaatccactttggttcccagtg
ggttgcacacacactgcacctgcccaagacctccctggattaagaaatga
cacatccacagccacacacacccacgcacacacacccacacacacacaca
cacatacacacacacacacacacacacacacacacacacgtgcaccagct
gattttgatatgcctggactagctcaattgttgggcacttctaaacctcc
ttgtggctagcaaacacttctctctgctattcctggtttaataccgtcta
aatctatgtcttatcttcctgccctgttatcttctgggcagctccccgcc
atagaactgcatttcctttccacctacattgttggattgtttctctcctg
cagctcttaaaactggtctctctccatcctagtcatgacgattctcctct
tcttttccctctctccctatgtcccttgcctgagcatcctaaaagttcat
tatccatgttcctgtctagtcattggctatatggcaattctttactacca
atcgaagtcagctggggggcagggactctcaggtctggaaggcagttttg
ggagccgaatttaagataaagcattagaacccaactcccaaacagctgtg
ttcccagaaataaactagatgggatattaatattattaaattatatatta
tatagtatatacttatttctaggagtaaattatttgttattttcttatag
atgatttttttatttgccctgccctggaaacaccaagttggaagaatgct
ttacaattgttagagttgtttgtaatgagaaagaaatcattcgggagcta
ctaagtaacttgggagcaaatattta

gaattccatttacagatctaagctatattctttcttctgtatcctcttag
ctaattaaataacttgtcctctgatttcacctaaaataatttaatattaa
aattattattaatcctgtacgtaataaaaatgagactgaatttttaccag
gtaaaaactgtaaatttagagatttaaagctgttataacatctgcctaat
tttaaaactagaaaatattcatttgtttaataatcagtcatttgaacata
atgatttatccctattcccattttaaaactatgtagaaaatttgattttt
aggcaagcccatgtaaccaaatgtggagtacattttgctgtcatattaaa
taaccaaatgaactaatatcttatttataactctcttttcccttcttata
taaacatcatatatgctaaatggaattaagtgtgttaaatttccttagga
atttgaaagtgctacagactttatacctagtgctctgatatactcataaa
gtgagccctatgctctcaaaagatatagagaaactaaataaaacagtaat
ataaaccttactagaatcagatgtgttaccagtagaaataagtcttttat
gctctctgaactttcttctatcattgaaagtcatgtaacttttgagttga
taaaatatcaagaaattgtcttctgggaaatctaaaaatgaacttgattt
ttttatcaccaaatttagtaaatatttatattaaacatttttaaatgatc
tgattttaagttacagagttaataatttacagtatgtttcttcattggaa
agctcgcataaatattttattggtcccaggttccttaaaattaattttgt
aatatccagtttttgtgttggtcaactatttttgaaaattgtaaattttt
aacaaccttgacttccaaaacaaagtcatcctaaacacacaatacttagg
aggcaagatgtatatcatacatgggaatcaatgccttttcttaacaatac
tcaagaaggaaaccactttcaagcatagcctaaaagatgactagaccatg
aaaatagctagtctgtttacaatgtatgtcatgttttgataggatgcaat
ccagataggaatattgggagaaaggacattcttgttctgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_32728937_32730105
seq2: B6Ng01-281M22.b_50_1225 (reverse)

seq1  TAAATTATTTCCTCCCAAATTTACTTAGTAGGCTCCCAAATTGGTTCTTT  50
      |||| ||||| ||||| || |||||||||| |||||| |||   ||||||
seq2  TAAA-TATTTGCTCCC-AAGTTACTTAGTA-GCTCCCGAATGATTTCTTT  47

seq1  CTCATTACAACAAACTCT-ACA--TGTAAAGCA-TCTTCAAACT--GTGT  94
      ||||||||||  |||||| |||  ||||||||| ||||| ||||  ||||
seq2  CTCATTACAAACAACTCTAACAATTGTAAAGCATTCTTCCAACTTGGTGT  97

seq1  TTC--AGGCA-GGCAAAT-AAAAATTCATTCTATAAG-AAATACAAATTA  139
      |||   |||| ||||||| ||||| ||| |||||||| |||||  || ||
seq2  TTCCAGGGCAGGGCAAATAAAAAAATCA-TCTATAAGAAAATAACAAATA  146

seq1  ATTTACTCCTAGAAATAGTTAATATACTATTATTAATATTATAATTTTAA  189
      |||||||||||||||||  | |||||||||   ||||| ||||| |||||
seq2  ATTTACTCCTAGAAATAAGT-ATATACTAT--ATAATA-TATAA-TTTAA  191

seq1  TAATATTAATAT-CCATCTAGTTTATTTCTTGGAACACAGCTGTTT-GGA  237
      |||||||||||| ||||||||||||||||| ||||||||||||||| |||
seq2  TAATATTAATATCCCATCTAGTTTATTTCTGGGAACACAGCTGTTTGGGA  241

seq1  GTT-GGTTCTAATGCTTTATCTT-AATTCGGCTCCCAAAACTGCCTTCCA  285
      ||| ||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTTGGGTTCTAATGCTTTATCTTAAATTCGGCTCCCAAAACTGCCTTCCA  291

seq1  GACCTGAGAGTCCCTG-CCCCCAGCTGACTTCGATTGGTAGTAAAGAATT  334
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GACCTGAGAGTCCCTGCCCCCCAGCTGACTTCGATTGGTAGTAAAGAATT  341

seq1  GCCATATAGCCAATGACTAGACAGGAACATGGATAATGAACTTTTAGGAT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATAGCCAATGACTAGACAGGAACATGGATAATGAACTTTTAGGAT  391

seq1  GCTCAGGCAAGGGACATAGGGAGAGAGGGAAAAGAAGAGGAGAATCGTCA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGCAAGGGACATAGGGAGAGAGGGAAAAGAAGAGGAGAATCGTCA  441

seq1  TGACTAGGATGGAGAGAGACCAGTTTTAAGAGCTGCAGGAGAGAAACAAT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGGATGGAGAGAGACCAGTTTTAAGAGCTGCAGGAGAGAAACAAT  491

seq1  CCAACAATGTAGGTGGAAAGGAAATGCAGTTCTATGGCGGGGAGCTGCCC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAATGTAGGTGGAAAGGAAATGCAGTTCTATGGCGGGGAGCTGCCC  541

seq1  AGAAGATAACAGGGCAGGAAGATAAGACATAGATTTAGACGGTATTAAAC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATAACAGGGCAGGAAGATAAGACATAGATTTAGACGGTATTAAAC  591

seq1  CAGGAATAGCAGAGAGAAGTGTTTGCTAGCCACAAGGAGGTTTAGAAGTG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATAGCAGAGAGAAGTGTTTGCTAGCCACAAGGAGGTTTAGAAGTG  641

seq1  CCCAACAATTGAGCTAGTCCAGGCATATCAAAATCAGCTGGTGCACGTGT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAATTGAGCTAGTCCAGGCATATCAAAATCAGCTGGTGCACGTGT  691

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGG  741

seq1  GTGTGTGTGCGTGGGTGTGTGTGGCTGTGGATGTGTCATTTCTTAATCCA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGCGTGGGTGTGTGTGGCTGTGGATGTGTCATTTCTTAATCCA  791

seq1  GGGAGGTCTTGGGCAGGTGCAGTGTGTGTGCAACCCACTGGGAACCAAAG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTCTTGGGCAGGTGCAGTGTGTGTGCAACCCACTGGGAACCAAAG  841

seq1  TGGATTAACTATTCACTGCTAAACACACTAGTGAAATGTTTATTTTCATA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTAACTATTCACTGCTAAACACACTAGTGAAATGTTTATTTTCATA  891

seq1  TTTATTCTTTAGCATCATATGTCAAATAAATAATGGGAAATATAAGCTAT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTTTAGCATCATATGTCAAATAAATAATGGGAAATATAAGCTAT  941

seq1  TTACATTCTAAAAAATTATAAAATGATATATAAACTATATCAATATGTTA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTCTAAAAAATTATAAAATGATATATAAACTATATCAATATGTTA  991

seq1  TACATGCCAAAATAAATGTAATTCCAGCAGTAATTTGGTATAATTCTTAT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCCAAAATAAATGTAATTCCAGCAGTAATTTGGTATAATTCTTAT  1041

seq1  ATTAATAATGTAAAGAAAATGGCAGTTAAACTAATGGATCACATAACACA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAATGTAAAGAAAATGGCAGTTAAACTAATGGATCACATAACACA  1091

seq1  ATGTTGTTTCTGTGTATATAAATAACTTCACTTGTTTTATCAATACTTTT  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTTTCTGTGTATATAAATAACTTCACTTGTTTTATCAATACTTTT  1141

seq1  ATGTATGGCACAGATAGTAGCAGTTGAAAGAATTC  1169
      |||||||||||||||||||||||||||||||||||
seq2  ATGTATGGCACAGATAGTAGCAGTTGAAAGAATTC  1176


seq1: chr1_32591714_32592856
seq2: B6Ng01-281M22.g_69_1210

seq1  GAATTCCATTTACAGATCTAAGCTATATTCTTTCTTCTGTATCCTCTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTACAGATCTAAGCTATATTCTTTCTTCTGTATCCTCTTAG  50

seq1  CTAATTAAATAACTTGTCCTCTGATTTCACCTAAAATAATTTAATATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTAAATAACTTGTCCTCTGATTTCACCTAAAATAATTTAATATTAA  100

seq1  AATTATTATTAATCCTGTACGTAATAAAAATGAGACTGAATTTTTACCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTATTAATCCTGTACGTAATAAAAATGAGACTGAATTTTTACCAG  150

seq1  GTAAAAACTGTAAATTTAGAGATTTAAAGCTGTTATAACATCTGCCTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAACTGTAAATTTAGAGATTTAAAGCTGTTATAACATCTGCCTAAT  200

seq1  TTTAAAACTAGAAAATATTCATTTGTTTAATAATCAGTCATTTGAACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACTAGAAAATATTCATTTGTTTAATAATCAGTCATTTGAACATA  250

seq1  ATGATTTATCCCTATTCCCATTTTAAAACTATGTAGAAAATTTGATTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTATCCCTATTCCCATTTTAAAACTATGTAGAAAATTTGATTTTT  300

seq1  AGGCAAGCCCATGTAACCAAATGTGGAGTACATTTTGCTGTCATATTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGCCCATGTAACCAAATGTGGAGTACATTTTGCTGTCATATTAAA  350

seq1  TAACCAAATGAACTAATATCTTATTTATAACTCTCTTTTCCCTTCTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAATGAACTAATATCTTATTTATAACTCTCTTTTCCCTTCTTATA  400

seq1  TAAACATCATATATGCTAAATGGAATTAAGTGTGTTAAATTTCCTTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATCATATATGCTAAATGGAATTAAGTGTGTTAAATTTCCTTAGGA  450

seq1  ATTTGAAAGTGCTACAGACTTTATACCTAGTGCTCTGATATACTCATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAGTGCTACAGACTTTATACCTAGTGCTCTGATATACTCATAAA  500

seq1  GTGAGCCCTATGCTCTCAAAAGATATAGAGAAACTAAATAAAACAGTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCCTATGCTCTCAAAAGATATAGAGAAACTAAATAAAACAGTAAT  550

seq1  ATAAACCTTACTAGAATCAGATGTGTTACCAGTAGAAATAAGTCTTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCTTACTAGAATCAGATGTGTTACCAGTAGAAATAAGTCTTTTAT  600

seq1  GCTCTCTGAACTTTCTTCTATCATTGAAAGTCATGTAACTTTTGAGTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTGAACTTTCTTCTATCATTGAAAGTCATGTAACTTTTGAGTTGA  650

seq1  TAAAATATCAAGAAATTGTCTTCTGGGAAATCTAAAAATGAACTTGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATCAAGAAATTGTCTTCTGGGAAATCTAAAAATGAACTTGATTT  700

seq1  TTTTATCACCAAATTTAGTAAATATTTATATTAAACATTTTTAAATGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCACCAAATTTAGTAAATATTTATATTAAACATTTTTAAATGATC  750

seq1  TGATTTTAAGTTACAGAGTTAATAATTTACAGTATGTTTCTTCATTGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTAAGTTACAGAGTTAATAATTTACAGTATGTTTCTTCATTGGAA  800

seq1  AGCTCGCATAAATATTTTATTGGTCCCAGGTTCCTTAAAATTAATTTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGCATAAATATTTTATTGGTCCCAGGTTCCTTAAAATTAATTTTGT  850

seq1  AATATCCAGTTTTTGTGTTGGTCAACTATTTTTGAAAATTGTAAA-TTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATATCCAGTTTTTGTGTTGGTCAACTATTTTTGAAAATTGTAAATTTTT  900

seq1  AACAACCTTGACTTCCAAAACAAAGTCATCCTAAACACACAAATACTTAG  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AACAACCTTGACTTCCAAAACAAAGTCATCCTAAACACAC-AATACTTAG  949

seq1  GAGGCAAGATGTATATCATACAT-GGAATCAATGCCTTTTCTTAACAATA  998
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAGGCAAGATGTATATCATACATGGGAATCAATGCCTTTTCTTAACAATA  999

seq1  CTCAAGAAGGGAAACCACTTTCAAGCAATAGCCTAAAAGATGACTAGAAC  1048
      |||||||| ||||||||||||||||| |||||||||||||||||||| ||
seq2  CTCAAGAA-GGAAACCACTTTCAAGC-ATAGCCTAAAAGATGACTAG-AC  1046

seq1  CATGAAAATAAGCTAGTCTGTTTACAATGTATGTCATGTTTTGATA-GAT  1097
      ||||||||| |||||||||||||||||||||||||||||||||||| |||
seq2  CATGAAAAT-AGCTAGTCTGTTTACAATGTATGTCATGTTTTGATAGGAT  1095

seq1  GCATCCCAGATTAGGATATT-GGAGAAAGAATATTCTTGTTCTGAGA  1143
      |||  ||||||  | ||||| |||||||| | |||||||||||||||
seq2  GCAATCCAGATAGGAATATTGGGAGAAAGGACATTCTTGTTCTGAGA  1142


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