BAC Information

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BAC

Clone NameB6Ng01-281P20
Chromosome1 (Build37)
Map Location 169,620,206 - 169,763,804
singlet/doubletdoublet
Overlap geneLmx1a
Upstream geneLOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg
Downstream geneLOC100039879, Pbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281P20.bB6Ng01-281P20.g
ACCGA081324GA081325
length1,1931,142
definitionB6Ng01-281P20.b B6Ng01-281P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(169,762,618 - 169,763,804)(169,620,206 - 169,621,341)
sequence
gaattctgttgcagaattgcgacttaatgagaagggtaatttatcaccat
ctaaggactgggaagatagctcagtttgcaaagtgatgctgagtaagcac
agacctgagttcaatgtttaagaactagagcaaaaagtattggtacgcac
tgttacccagtgctgaggaatggggacaaagaggatgcctagggctgcct
ggaccccaggatctgactaattgaggaactctaggtcctagagagacatt
ctgttcaaaagaacaaaaaccaaggtgagttactatcctgaagacctctg
gccttcgtgtaaatgcacacacttccatgcacataactccatgtacactc
catgtccatgaacatacatgaaagaaagaaggataaataaaaccaagatt
atgggaaaatggccagggcatgtatatttttagagtctggaagaaaataa
gtaacccaggacttgtctgttacctaggacactaaggctggagttagaga
ggccagacactgaaggctgggagtggacacatgcattctgcctgccacaa
caaaaacaactgtttcactgtttgactaaccactaacacagacacttcgc
ttctcccttcctccaggcgctgtggctgaaataattgctgatgataggcg
tttttaatcaagagaacgactctaccccataagttagcttagaaaggctg
acagcaagtccgatgtccatcggctgttgttggaagaaaccagtaagaca
aagacagataaagatgagaagcaggttaccttggctcgctggttctggaa
ccacacctgaaccacacggacactcagccctgtctccgcagccagagtct
ccctcaccttgaagaaattgaatacatgagtataacacacacatacacat
acacacacacacacacacacacacacacacacactgaccgcttagagtag
ggaggtaaaccattcctgggtggtgccggggtggggggcataggtcacat
tccctaagtagagactagatcatgataaatgttcaaatatgccaaacaca
gaacttctttctttctggcagaaaaggcattcttttcacaatgtagaaga
aaagaaaaaagaatggcctccatttatttagaatgccattttccataagg
acttggtctggaactcgaagaatggctttataggatctactgg
gaattccccaaagccttgaggggcgggcgagcatgttcacaaggcatttg
agtggcaagtgattaataatacccagggctggatttttaatcacggagct
gatcgacggctcataaatgccaccggtttctcagaggcctgtgtcctagc
atgagagatccgaggcccagagcgcccaggttcttctcttcccccaccaa
ctgcagccccaattttagtattgggcatggccgagaggcttttccgggct
ggtgggcagcgctgcgctgggattagcttgcacggcggggcccttgcctg
gtctttaattaactgaagccggacccctgttccgcaagcttggtatccct
ctacccccaacccagccacttcgaaggagcagagaatagagagatccaaa
gagtcatacccatgggtctttcagagttcaggcttgttttgccagtgtct
cttcaactctccctttggaattttcaagtttggagaaaaaaatgttttgt
tttgttttgtttttaaattttctttcttcctgtgtttcttcccgcttctt
tctgaaggagagatttttcttttatttaaacctcttgcctctttctctaa
ctttagaaccaatagagtggggctgaaaaaatttcgattatagaaaccat
gtccagagagaaatcgcccactccaccccaacagttcagaggaaacgaaa
ttacaaaacccatgccctcttctttcaacctccctttcgaaattgtcagg
attttctccccagagcaagaaggaagacgcaggctagagcctgtgtgcgg
actcaggcacactgggtttggttctctgcaccatgagacccgcgacccat
cctatggtttgtcccaaccataggatgggggtgctgagaccaagacaaca
gaaatttacaattgagaacgaccactttctccccagggccttcttgctgg
cttcccaccacacaaacgacctgtccagcttaacaaagcagaagtgagat
tagtgtagtggtatgggagaaggatccgtccctttggacatcacagaaca
aggaagtgtttcttgtgggaacaaagggcttcctttaacggttgtgaaaa
ttggtcaacaaggcggccagtattctcctttgcttgttgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_169762618_169763804
seq2: B6Ng01-281P20.b_44_1236 (reverse)

seq1  CCAGTAGATCATATAAAGCCATACCTTCCGAGTACAAGAAACCCAAAGTT  50
      |||||||||| ||||||||||| |  | ||||| | |||   ||||   |
seq2  CCAGTAGATCCTATAAAGCCATTC--TTCGAGTTCCAGA---CCAA--GT  43

seq1  CCTCCTGGAAATGTGCA-TCTAAATAAAT-GAG--CAT--CTTTTTCTTT  94
      |||  ||||||   ||| ||||||||||| |||  |||   |||||||||
seq2  CCTTATGGAAAATGGCATTCTAAATAAATGGAGGCCATTCTTTTTTCTTT  93

seq1  --CTCTACCTTGTGAAA--GATGCCTTTTCTGCCAGAAAGAA--GAGTTC  138
         ||||| ||||||||   ||||||||||||||||||||||   |||||
seq2  TCTTCTACATTGTGAAAAGAATGCCTTTTCTGCCAGAAAGAAAGAAGTTC  143

seq1  TTGTGTTTGGGCATATTTGAACATTAATCATGATCTAGTCTCTACTTA-G  187
       ||||||| |||||||||||||||| |||||||||||||||||||||| |
seq2  -TGTGTTT-GGCATATTTGAACATTTATCATGATCTAGTCTCTACTTAGG  191

seq1  GAATGTGACCTATGCCCCC--ACCCGGCACCACCCAGGAAATGGTTTACC  235
      |||||||||||||||||||   |||||||||||||||| |||||||||||
seq2  GAATGTGACCTATGCCCCCCACCCCGGCACCACCCAGG-AATGGTTTACC  240

seq1  T-CCTACTCTAAGCGGTCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  284
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACTCTAAGCGGTCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  290

seq1  TGTATGTGTATGTGTGTGTTATACTCATGTATTCAATTTCTTCAAGGTGA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGTATGTGTGTGTTATACTCATGTATTCAATTTCTTCAAGGTGA  340

seq1  GGGAGACTCTGGCTGCGGAGACAGGGCTGAGTGTCCGTGTGGTTCAGGTG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACTCTGGCTGCGGAGACAGGGCTGAGTGTCCGTGTGGTTCAGGTG  390

seq1  TGGTTCCAGAACCAGCGAGCCAAGGTAACCTGCTTCTCATCTTTATCTGT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCAGAACCAGCGAGCCAAGGTAACCTGCTTCTCATCTTTATCTGT  440

seq1  CTTTGTCTTACTGGTTTCTTCCAACAACAGCCGATGGACATCGGACTTGC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTTACTGGTTTCTTCCAACAACAGCCGATGGACATCGGACTTGC  490

seq1  TGTCAGCCTTTCTAAGCTAACTTATGGGGTAGAGTCGTTCTCTTGATTAA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCCTTTCTAAGCTAACTTATGGGGTAGAGTCGTTCTCTTGATTAA  540

seq1  AAACGCCTATCATCAGCAATTATTTCAGCCACAGCGCCTGGAGGAAGGGA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCCTATCATCAGCAATTATTTCAGCCACAGCGCCTGGAGGAAGGGA  590

seq1  GAAGCGAAGTGTCTGTGTTAGTGGTTAGTCAAACAGTGAAACAGTTGTTT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCGAAGTGTCTGTGTTAGTGGTTAGTCAAACAGTGAAACAGTTGTTT  640

seq1  TTGTTGTGGCAGGCAGAATGCATGTGTCCACTCCCAGCCTTCAGTGTCTG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTGGCAGGCAGAATGCATGTGTCCACTCCCAGCCTTCAGTGTCTG  690

seq1  GCCTCTCTAACTCCAGCCTTAGTGTCCTAGGTAACAGACAAGTCCTGGGT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTAACTCCAGCCTTAGTGTCCTAGGTAACAGACAAGTCCTGGGT  740

seq1  TACTTATTTTCTTCCAGACTCTAAAAATATACATGCCCTGGCCATTTTCC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATTTTCTTCCAGACTCTAAAAATATACATGCCCTGGCCATTTTCC  790

seq1  CATAATCTTGGTTTTATTTATCCTTCTTTCTTTCATGTATGTTCATGGAC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCTTGGTTTTATTTATCCTTCTTTCTTTCATGTATGTTCATGGAC  840

seq1  ATGGAGTGTACATGGAGTTATGTGCATGGAAGTGTGTGCATTTACACGAA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTGTACATGGAGTTATGTGCATGGAAGTGTGTGCATTTACACGAA  890

seq1  GGCCAGAGGTCTTCAGGATAGTAACTCACCTTGGTTTTTGTTCTTTTGAA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAGGTCTTCAGGATAGTAACTCACCTTGGTTTTTGTTCTTTTGAA  940

seq1  CAGAATGTCTCTCTAGGACCTAGAGTTCCTCAATTAGTCAGATCCTGGGG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTCTCTCTAGGACCTAGAGTTCCTCAATTAGTCAGATCCTGGGG  990

seq1  TCCAGGCAGCCCTAGGCATCCTCTTTGTCCCCATTCCTCAGCACTGGGTA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCAGCCCTAGGCATCCTCTTTGTCCCCATTCCTCAGCACTGGGTA  1040

seq1  ACAGTGCGTACCAATACTTTTTGCTCTAGTTCTTAAACATTGAACTCAGG  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCGTACCAATACTTTTTGCTCTAGTTCTTAAACATTGAACTCAGG  1090

seq1  TCTGTGCTTACTCAGCATCACTTTGCAAACTGAGCTATCTTCCCAGTCCT  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTTACTCAGCATCACTTTGCAAACTGAGCTATCTTCCCAGTCCT  1140

seq1  TAGATGGTGATAAATTACCCTTCTCATTAAGTCGCAATTCTGCAACAGAA  1184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGTGATAAATTACCCTTCTCATTAAGTCGCAATTCTGCAACAGAA  1190

seq1  TTC  1187
      |||
seq2  TTC  1193

seq1: chr1_169620206_169621341
seq2: B6Ng01-281P20.g_67_1208

seq1  GAATTCCCCAAAGCCTTGAGGGGCGGGCGAGCATGTTCACAAGGCATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAAAGCCTTGAGGGGCGGGCGAGCATGTTCACAAGGCATTTG  50

seq1  AGTGGCAAGTGATTAATAATACCCAGGGCTGGATTTTTAATCACGGAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCAAGTGATTAATAATACCCAGGGCTGGATTTTTAATCACGGAGCT  100

seq1  GATCGACGGCTCATAAATGCCACCGGTTTCTCAGAGGCCTGTGTCCTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGACGGCTCATAAATGCCACCGGTTTCTCAGAGGCCTGTGTCCTAGC  150

seq1  ATGAGAGATCCGAGGCCCAGAGCGCCCAGGTTCTTCTCTTCCCCCACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGATCCGAGGCCCAGAGCGCCCAGGTTCTTCTCTTCCCCCACCAA  200

seq1  CTGCAGCCCCAATTTTAGTATTGGGCATGGCCGAGAGGCTTTTCCGGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCCCCAATTTTAGTATTGGGCATGGCCGAGAGGCTTTTCCGGGCT  250

seq1  GGTGGGCAGCGCTGCGCTGGGATTAGCTTGCACGGCGGGGCCCTTGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCAGCGCTGCGCTGGGATTAGCTTGCACGGCGGGGCCCTTGCCTG  300

seq1  GTCTTTAATTAACTGAAGCCGGACCCCTGTTCCGCAAGCTTGGTATCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAATTAACTGAAGCCGGACCCCTGTTCCGCAAGCTTGGTATCCCT  350

seq1  CTACCCCCAACCCAGCCACTTCGAAGGAGCAGAGAATAGAGAGATCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCCAACCCAGCCACTTCGAAGGAGCAGAGAATAGAGAGATCCAAA  400

seq1  GAGTCATACCCATGGGTCTTTCAGAGTTCAGGCTTGTTTTGCCAGTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATACCCATGGGTCTTTCAGAGTTCAGGCTTGTTTTGCCAGTGTCT  450

seq1  CTTCAACTCTCCCTTTGGAATTTTCAAGTTTGGAGAAAAAAATGTTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACTCTCCCTTTGGAATTTTCAAGTTTGGAGAAAAAAATGTTTTGT  500

seq1  TTTGTTTTGTTTTTAAATTTTCTTTCTTCCTGTGTTTCTTCCCGCTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTTAAATTTTCTTTCTTCCTGTGTTTCTTCCCGCTTCTT  550

seq1  TCTGAAGGAGAGATTTTTCTTTTATTTAAACCTCTTGCCTCTTTCTCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGAGAGATTTTTCTTTTATTTAAACCTCTTGCCTCTTTCTCTAA  600

seq1  CTTTAGAACCAATAGAGTGGGGCTGAAAAAATTTCGATTATAGAAACCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAACCAATAGAGTGGGGCTGAAAAAATTTCGATTATAGAAACCAT  650

seq1  GTCCAGAGAGAAATCGCCCACTCCACCCCAACAGTTCAGAGGAAACGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAGAGAAATCGCCCACTCCACCCCAACAGTTCAGAGGAAACGAAA  700

seq1  TTACAAAACCCATGCCCTCTTCTTTCAACCTCCCTTTCGAAATTGTCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAACCCATGCCCTCTTCTTTCAACCTCCCTTTCGAAATTGTCAGG  750

seq1  ATTTTCTCCCCAGAGCAAGAAGGAAGACGCAGGCTAGAGCCTGTGTGCGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCCCCAGAGCAAGAAGGAAGACGCAGGCTAGAGCCTGTGTGCGG  800

seq1  ACTCAGGCACACTGGGTTTGGTTCTCTGCACCATGAGACCCGCGACCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGCACACTGGGTTTGGTTCTCTGCACCATGAGACCCGCGACCCAT  850

seq1  CCTATGGTTTGTCCCAACCATAGGAT-GGGGTGCTGAGACCAAGACAACA  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCTATGGTTTGTCCCAACCATAGGATGGGGGTGCTGAGACCAAGACAACA  900

seq1  GAAATTTACAATTGAGAACGACCACTTTCTCCCCA-GGCCTTCTTGCTGG  948
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAAATTTACAATTGAGAACGACCACTTTCTCCCCAGGGCCTTCTTGCTGG  950

seq1  CTTCCCACCACACAAAACGACCTGTCCAGCTT-ACAAAGCAGAAAGTGAG  997
      ||||||||||||| |||||||||||||||||| ||||||||| |||||||
seq2  CTTCCCACCACAC-AAACGACCTGTCCAGCTTAACAAAGCAG-AAGTGAG  998

seq1  ATTAGTGTAGTGGTAT-GGAGAAGGAT-CGTCCCTTTGGGACATCACAG-  1044
      |||||||||||||||| |||||||||| ||||||||| ||||||||||| 
seq2  ATTAGTGTAGTGGTATGGGAGAAGGATCCGTCCCTTT-GGACATCACAGA  1047

seq1  ACAAG--AGTG-TTCTTGTGGGA--CAAGGGCTTCTTTAAACGGTTGTGA  1089
      |||||  |||| |||||||||||   ||||||||| || |||||||||||
seq2  ACAAGGAAGTGTTTCTTGTGGGAACAAAGGGCTTCCTTTAACGGTTGTGA  1097

seq1  AAATT-GTCAACAAAGGCGGCCAAGTATTTCTCCCTTGCTTGTTGGGG  1136
      ||||| |||||| ||||||||| |||| |||||| |||||||||||||
seq2  AAATTGGTCAAC-AAGGCGGCC-AGTA-TTCTCCTTTGCTTGTTGGGG  1142