BAC Information

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BAC

Clone NameB6Ng01-282B11
Chromosome1 (Build37)
Map Location 185,754,368 - 185,857,064
singlet/doubletdoublet
Overlap gene1700056E22Rik
Upstream geneSusd4, Tlr5, EG666649
Downstream geneDusp10, EG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282B11.bB6Ng01-282B11.g
ACCGA081400GA081401
length1,1511,142
definitionB6Ng01-282B11.b B6Ng01-282B11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(185,754,368 - 185,755,518)(185,855,935 - 185,857,064)
sequence
gaattctagactgtacttcagaggggaagtatgtcaacctccttatgctc
gatggtttcttatcaattgttaaacattaaacactggtgaacacatgaag
agtcagcctgtgagtgcgtgtcattgcctggccctcctccctaactggtc
caggcctgcctgtagtgatcatctctcaacacctggaacaggagtagcat
ctggtactggatgagctctggctgtcctgccttctcactcctccttggca
ctggtgtgggcctgtgatgagtatggccactttgggagatgacatttgcc
ccagccagatgtcagctctaatctcgcttcctcttctttcatgtctccca
aggggcataatcccagttgctaaatatagtgtgtgtcatcttaaaatata
taccctctttggccagagttttatttttctctcaaatgacattaccaaac
tttctattaataaaaataaagctagatggccaaacatggctgtctaccca
tttattggaggacgccagggctcaaggtgtacagatatgagctacacctt
ggcttctttctgggaaaagctatgacattctgataaaaccatataaggcc
acattggtttacatcttcttcttgtcaccttgcatagagtcatggcacct
atgaagaaggatctccaggagatgggctgggccaggtgggtgtaataggg
accttgtaatgctggccaagctccagctacacagcataactgtcactcca
tatcttcttattcttactggccaatgtactaccaacttttcttaatgcca
gagagatgccaccactgggcagtttgatgggtcgtgtagtcttgggtcct
gtcctcagtctggccattccccagagaacactcagggaagaacttgagcc
tcatccccactgatctctgcccataccatccaagaaccctctaataaacc
cccgattactccacttcctaagaataaccaggtcgcattgaaagcttact
ctggggccagacactttcaacacatatgactaaatcattacaaggcctcc
aagctgacagccaattgtttctttttacggagcagagtcatgccctcaga
taggtggaggatagctaagtcattcagtctcagtctgaaaagaacttggg
a

gaattcaaaggagtggaaaagcccagatgaactgtgatgaagttgcgtta
aagaatcctaaagcaatagagctttttatacctccctaccccctcagaga
ggaagaccaaaatgtgaagtaattgaagtggaataaaacattatcagctc
cgtggcaggttcagatgtccttaatgatgggaggcgtttgctttaggccc
cagacattcaccattgctgttgatctaggatcataaggtgtccaaccatc
atcaccttcgctgactagctctgtcgattcagcatgatctcccttgagtt
gagcacttctacacaagtgcacactggggttggaaaaggattttctttag
ccccattctgtctacacacccaaatacacagcacccacacccgaatgtct
gcacacgagtgtccaggtcgcaccctttggtccttagatctttgaggatt
agcaggatcaggctagtggaggaggtaggctgtgcgcattttccgtggaa
cccagaaaagaatttcccagagcacttttgtaggttatctatatccctga
atatttactgctggggttcccatttacggtttgagttctaggtattaggt
ctgatgcttgtctgtccagccacatttgctgtgttcatcactgtgtacat
ttgtaaacagcaaactcccgtccttgctccgaaaaagatgaaaagatgct
tgtggaagtggttggggtatagtagagcgaggttctctattgaccgaagg
ctttgggaaggttgtgtttgctttaggctggaggagcctctgtctaaagg
tactgacaaccctgtaaattgtgattcacaaagcctgatgccggcaatgt
gagaaagaaatgtaactcatttaatgagatgattattatagtttcagact
aataagttatagtaattctgttaactaaaagtctgtcatccaggctgaaa
aatggggaaaactgacaaaatttacctcatccaatccaaacccgaaagca
ttggagttaattcccatgtcattgaccatatgccatggttaatttaccag
cccattaacattatgcctaaggatccggagctttcaattaggcagcgttt
gagtaggctatacctcaaaggagtcgatcccaggtaggtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_185754368_185755518
seq2: B6Ng01-282B11.b_46_1196

seq1  GAATTCTAGACTGTACTTCAGAGGGGAAGTATGTCAACCTCCTTATGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGACTGTACTTCAGAGGGGAAGTATGTCAACCTCCTTATGCTC  50

seq1  GATGGTTTCTTATCAATTGTTAAACATTAAACACTGGTGAACACATGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTCTTATCAATTGTTAAACATTAAACACTGGTGAACACATGAAG  100

seq1  AGTCAGCCTGTGAGTGCGTGTCATTGCCTGGCCCTCCTCCCTAACTGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCCTGTGAGTGCGTGTCATTGCCTGGCCCTCCTCCCTAACTGGTC  150

seq1  CAGGCCTGCCTGTAGTGATCATCTCTCAACACCTGGAACAGGAGTAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTGCCTGTAGTGATCATCTCTCAACACCTGGAACAGGAGTAGCAT  200

seq1  CTGGTACTGGATGAGCTCTGGCTGTCCTGCCTTCTCACTCCTCCTTGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACTGGATGAGCTCTGGCTGTCCTGCCTTCTCACTCCTCCTTGGCA  250

seq1  CTGGTGTGGGCCTGTGATGAGTATGGCCACTTTGGGAGATGACATTTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGGGCCTGTGATGAGTATGGCCACTTTGGGAGATGACATTTGCC  300

seq1  CCAGCCAGATGTCAGCTCTAATCTCGCTTCCTCTTCTTTCATGTCTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGATGTCAGCTCTAATCTCGCTTCCTCTTCTTTCATGTCTCCCA  350

seq1  AGGGGCATAATCCCAGTTGCTAAATATAGTGTGTGTCATCTTAAAATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCATAATCCCAGTTGCTAAATATAGTGTGTGTCATCTTAAAATATA  400

seq1  TACCCTCTTTGGCCAGAGTTTTATTTTTCTCTCAAATGACATTACCAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCTTTGGCCAGAGTTTTATTTTTCTCTCAAATGACATTACCAAAC  450

seq1  TTTCTATTAATAAAAATAAAGCTAGATGGCCAAACATGGCTGTCTACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTAATAAAAATAAAGCTAGATGGCCAAACATGGCTGTCTACCCA  500

seq1  TTTATTGGAGGACGCCAGGGCTCAAGGTGTACAGATATGAGCTACACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGGAGGACGCCAGGGCTCAAGGTGTACAGATATGAGCTACACCTT  550

seq1  GGCTTCTTTCTGGGAAAAGCTATGACATTCTGATAAAACCATATAAGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTTTCTGGGAAAAGCTATGACATTCTGATAAAACCATATAAGGCC  600

seq1  ACATTGGTTTACATCTTCTTCTTGTCACCTTGCATAGAGTCATGGCACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGTTTACATCTTCTTCTTGTCACCTTGCATAGAGTCATGGCACCT  650

seq1  ATGAAGAAGGATCTCCAGGAGATGGGCTGGGCCAGGTGGGTGTAATAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAGGATCTCCAGGAGATGGGCTGGGCCAGGTGGGTGTAATAGGG  700

seq1  ACCTTGTAATGCTGGCCAAGCTCCAGCTACACAGCATAACTGTCACTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTAATGCTGGCCAAGCTCCAGCTACACAGCATAACTGTCACTCCA  750

seq1  TATCTTCTTATTCTTACTGGCCAATGTACTACCAACTTTTCTTAATGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCTTATTCTTACTGGCCAATGTACTACCAACTTTTCTTAATGCCA  800

seq1  GAGAGATGCCACCACTGGGCAGTTTGATGGGTCGTGTAGTCTTGGGTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGCCACCACTGGGCAGTTTGATGGGTCGTGTAGTCTTGGGTCCT  850

seq1  GTCCTCAGTCTGGCCATTCCCCAGAGAACACTCAGGGAAGAACTTGAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGTCTGGCCATTCCCCAGAGAACACTCAGGGAAGAACTTGAGCC  900

seq1  TCATCCCCACTGATCTCTGCCCATACCATCCAAGAA-CCTCTAAATAAAC  949
      |||||||||||||||||||||||||||||||||||| ||||| |||||||
seq2  TCATCCCCACTGATCTCTGCCCATACCATCCAAGAACCCTCT-AATAAAC  949

seq1  CCCCGATTACTCCAC-TCCTAAGAATAACCAGGTCGCATTGAAAGCTTAC  998
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCCCGATTACTCCACTTCCTAAGAATAACCAGGTCGCATTGAAAGCTTAC  999

seq1  TCT-GGGCCAGACACTTCAAACACATATGACT-AATCATTACAAGGCCCT  1046
      ||| |||||||||||||  ||||||||||||| ||||||||||||| |||
seq2  TCTGGGGCCAGACACTTTCAACACATATGACTAAATCATTACAAGG-CCT  1048

seq1  CCAAAGGCTGACAGCC-ATTGTTCTTTTTAACAGAGGCAGAGGTCATG-C  1094
      ||||  |||||||||| ||||||  |||| || || ||||| |||||| |
seq2  CCAA--GCTGACAGCCAATTGTTTCTTTTTACGGA-GCAGA-GTCATGCC  1094

seq1  CTCAGATAGGTTGAAGAATAAGCTAATTCA-TCAGTCTCAGTCTAAAAAG  1143
      ||||||||||| || ||   |||||| ||| ||||||||||||| |||||
seq2  CTCAGATAGGTGGAGGA--TAGCTAAGTCATTCAGTCTCAGTCTGAAAAG  1142

seq1  AAC-TGGGA  1151
      ||| |||||
seq2  AACTTGGGA  1151


seq1: chr1_185855935_185857064
seq2: B6Ng01-282B11.g_69_1210 (reverse)

seq1  AAAACCTACCTGGAATCTGACTTCTTTGA-GTATAG-CTACTCAAACTGC  48
      ||||||||||||| ||| |||| |||||| |||||| |||||||||| ||
seq2  AAAACCTACCTGGGATC-GACTCCTTTGAGGTATAGCCTACTCAAAC-GC  48

seq1  TGCCTAATTTAAAAAGCCTCCGGATCTTTA-GCAT-ATGTTAAT-GGCTG  95
      ||||||||| |||    ||||||||| ||| |||| |||||||| |||||
seq2  TGCCTAATTGAAA---GCTCCGGATCCTTAGGCATAATGTTAATGGGCTG  95

seq1  GTAA--TTACCAT-GCATAT-GTTAATGACATGGAAATT-ACT-CAATGC  139
      ||||  | ||||| |||||| || |||||||||| |||| ||| ||||||
seq2  GTAAATTAACCATGGCATATGGTCAATGACATGGGAATTAACTCCAATGC  145

seq1  -TTCGGGTTT-GATT-GATGAG--TAATTTTGTCAGTTTTCCCAATTTTT  184
       ||||||||| |||| ||||||   |||||||||||||||||| ||||||
seq2  TTTCGGGTTTGGATTGGATGAGGTAAATTTTGTCAGTTTTCCCCATTTTT  195

seq1  CAGCCTGGATGACAGACTTTTAGTTAACAGAATTACTATAACTTATTAGT  234
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGATGACAGACTTTTAGTTAACAGAATTACTATAACTTATTAGT  245

seq1  CTGAAACTATAATAATCATCTCATTAAATGAGTTACATTTCTTTCTCACA  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACTATAATAATCATCTCATTAAATGAGTTACATTTCTTTCTCACA  295

seq1  TTGCCGGCATCAGGCTTTGTGAATCACAATTTACA-GGTTGTCAGTACCT  333
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTGCCGGCATCAGGCTTTGTGAATCACAATTTACAGGGTTGTCAGTACCT  345

seq1  TTAGACAGAGGCTCCTCCAGCCTAAAGCAAACACAACCTTCCCAAAGCCT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAGAGGCTCCTCCAGCCTAAAGCAAACACAACCTTCCCAAAGCCT  395

seq1  TCGGTCAATAGAGAACCTCGCTCTACTATACCCCAACCACTTCCACAAGC  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTCAATAGAGAACCTCGCTCTACTATACCCCAACCACTTCCACAAGC  445

seq1  ATCTTTTCATCTTTTTCGGAGCAAGGACGGGAGTTTGCTGTTTACAAATG  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTCATCTTTTTCGGAGCAAGGACGGGAGTTTGCTGTTTACAAATG  495

seq1  TACACAGTGATGAACACAGCAAATGTGGCTGGACAGACAAGCATCAGACC  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGTGATGAACACAGCAAATGTGGCTGGACAGACAAGCATCAGACC  545

seq1  TAATACCTAGAACTCAAACCGTAAATGGGAACCCCAGCAGTAAATATTCA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCTAGAACTCAAACCGTAAATGGGAACCCCAGCAGTAAATATTCA  595

seq1  GGGATATAGATAACCTACAAAAGTGCTCTGGGAAATTCTTTTCTGGGTTC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATAGATAACCTACAAAAGTGCTCTGGGAAATTCTTTTCTGGGTTC  645

seq1  CACGGAAAATGCGCACAGCCTACCTCCTCCACTAGCCTGATCCTGCTAAT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGAAAATGCGCACAGCCTACCTCCTCCACTAGCCTGATCCTGCTAAT  695

seq1  CCTCAAAGATCTAAGGACCAAAGGGTGCGACCTGGACACTCGTGTGCAGA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAGATCTAAGGACCAAAGGGTGCGACCTGGACACTCGTGTGCAGA  745

seq1  CATTCGGGTGTGGGTGCTGTGTATTTGGGTGTGTAGACAGAATGGGGCTA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGGGTGTGGGTGCTGTGTATTTGGGTGTGTAGACAGAATGGGGCTA  795

seq1  AAGAAAATCCTTTTCCAACCCCAGTGTGCACTTGTGTAGAAGTGCTCAAC  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATCCTTTTCCAACCCCAGTGTGCACTTGTGTAGAAGTGCTCAAC  845

seq1  TCAAGGGAGATCATGCTGAATCGACAGAGCTAGTCAGCGAAGGTGATGAT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGAGATCATGCTGAATCGACAGAGCTAGTCAGCGAAGGTGATGAT  895

seq1  GGTTGGACACCTTATGATCCTAGATCAACAGCAATGGTGAATGTCTGGGG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGACACCTTATGATCCTAGATCAACAGCAATGGTGAATGTCTGGGG  945

seq1  CCTAAAGCAAACGCCTCCCATCATTAAGGACATCTGAACCTGCCACGGAG  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGCAAACGCCTCCCATCATTAAGGACATCTGAACCTGCCACGGAG  995

seq1  CTGATAATGTTTTATTCCACTTCAATTACTTCACATTTTGGTCTTCCTCT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAATGTTTTATTCCACTTCAATTACTTCACATTTTGGTCTTCCTCT  1045

seq1  CTGAGGGGGTAGGGAGGTATAAAAAGCTCTATTGCTTTAGGATTCTTTAA  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGGGTAGGGAGGTATAAAAAGCTCTATTGCTTTAGGATTCTTTAA  1095

seq1  CGCAACTTCATCACAGTTCATCTGGGCTTTTCCACTCCTTTGAATTC  1130
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAACTTCATCACAGTTCATCTGGGCTTTTCCACTCCTTTGAATTC  1142


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