BAC Information

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BAC

Clone NameB6Ng01-282M16
Chromosome1 (Build37)
Map Location 64,650,632 - 64,714,796
singlet/doubletdoublet
Overlap geneCreb1, 2310038H17Rik
Upstream geneGm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1, LOC100043124
Downstream geneCcnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282M16.bB6Ng01-282M16.g
ACCGA081915GA081916
length8041,064
definitionB6Ng01-282M16.b B6Ng01-282M16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,650,632 - 64,651,438)(64,713,729 - 64,714,796)
sequence
gaattctagacttccatgtgtttgttagatgggaagcacaggtcccaaac
agaacaaatttctcctccaaatctgtcccttcaggcattttccatgtcat
acacacggtgccactttccattaagttgactgtcaagcccaggaaagcac
tgttcgtccgtgccaccttgcctgagactgaattttcttcagttttaagc
attcttcagataaagacttagcatcaagtggaaggcaggctcatttccag
cgatgagtattatttttgctttttaactgataagtggttaacagaaccat
aaagtgacccatttgcgttcacacacttgggcaactaccattcctgtgca
gttcacagacatttccatcatctggataaaaccctacacctactaaatgg
ttatctttcccctttttccttctgcctctggcaaccagagtctgccttct
gtaaattgagaaatttcaaataaatggaatcataatgtgtatatgacttt
gtgtctagcttttttcatgaaacatgtttctatgacactggaattaaacc
cagtagtgttcacactagtcccgcgttctactccatcctccatcttcaag
tatgctgggattgaaccctgggttctatctgacttgctaagcaagtgatt
taacgctgaaaagcatccctaacttttatgtctgacgctgttgccaggtt
tacacaaggctatgatgtgtatacactttttctagtctgttggttttccc
ttctgcccccatattgacaatggtttggtttggttggttggttgggttgg
ttgg
gaattctcttggtttgtgcccaccttggttattggtgatgaaaattgtat
agggtagatagatgcaatgcagggccattgactgtaggttctgacgtttg
tttttgtcacttaatgaatattcttcaactacacaacatcttgaaaagac
tcatgataaaaaggaccatttgtatgttatataaatacaattttagtgtt
aattacatgtgtggtgggcaagtggtgtatgtacatgtgtgcagggtcct
gagaaggctttctggagctggagttacagtggtgtgtattacctcatgtg
gatgttaacaactgaacccagggcctctgtgaatgcagagggtgctctta
actgctaagccatctccatagcttcagtaggttatatttttctatataga
atatcaccaagattttggttaagttgtggtcacctggaattttactaaca
gtcataaggctgcctttgtccagaacccagagcttatccactgagtctca
ggtagctaacaaaatgctgatccgaaagcctcttgactcagtttctcctt
ttgcaaccataatcttaacctagttgttctaatgtttcctccattcctta
gtttcaccattgctgaaattctcatgtctcactgccttgccaccacaaat
ctttcctctcattcctgaagtaaatctgcgtggatgttcacatgagctgt
ccacacatttatcactatggcttgtgttaaccataggcagtaattctctt
gagctataacagatgaaccagcatgattcacacagaaatgggaagaatgg
ctgtgacaaatctctggaaaaataaacattactttgtacctcaattctga
tgggaaaaatggtcagtcttgcaaaaggcatctgagtttatcagcagatg
tagcaataatataactactagtatatgggaatttttctcacattctgatt
acagctttattgcgtatgtactagcctttattgggcattgctttctaggc
tataaaaacacaaagagcatgctctgttttcactgatgacttgatctgtg
atttatttgacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_64650632_64651438
seq2: B6Ng01-282M16.b_44_847

seq1  GAATTCTAGACTTCCATGTGTTTGTTAGATGGGAAGCACAGGTCCCAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGACTTCCATGTGTTTGTTAGATGGGAAGCACAGGTCCCAAAC  50

seq1  AGAACAAATTTCTCCTCCAAATCTGTCCCTTCAGGCATTTTCCATGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAATTTCTCCTCCAAATCTGTCCCTTCAGGCATTTTCCATGTCAT  100

seq1  ACACACGGTGCCACTTTCCATTAAGTTGACTGTCAAGCCCAGGAAAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGGTGCCACTTTCCATTAAGTTGACTGTCAAGCCCAGGAAAGCAC  150

seq1  TGTTCGTCCGTGCCACCTTGCCTGAGACTGAATTTTCTTCAGTTTTAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGTCCGTGCCACCTTGCCTGAGACTGAATTTTCTTCAGTTTTAAGC  200

seq1  ATTCTTCAGATAAAGACTTAGCATCAAGTGGAAGGCAGGCTCATTTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCAGATAAAGACTTAGCATCAAGTGGAAGGCAGGCTCATTTCCAG  250

seq1  CGATGAGTATTATTTTTGCTTTTTAACTGATAAGTGGTTAACAGAACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGAGTATTATTTTTGCTTTTTAACTGATAAGTGGTTAACAGAACCAT  300

seq1  AAAGTGACCCATTTGCGTTCACACACTTGGGCAACTACCATTCCTGTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGACCCATTTGCGTTCACACACTTGGGCAACTACCATTCCTGTGCA  350

seq1  GTTCACAGACATTTCCATCATCTGGATAAAACCCTACACCTACTAAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACAGACATTTCCATCATCTGGATAAAACCCTACACCTACTAAATGG  400

seq1  TTATCTTTCCCCTTTTTCCTTCTGCCTCTGGCAACCAGAGTCTGCCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTCCCCTTTTTCCTTCTGCCTCTGGCAACCAGAGTCTGCCTTCT  450

seq1  GTAAATTGAGAAATTTCAAATAAATGGAATCATAATGTGTATATGACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTGAGAAATTTCAAATAAATGGAATCATAATGTGTATATGACTTT  500

seq1  GTGTCTAGCTTTTTTCATGAAACATGTTTCTATGACACTGGAATTAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTAGCTTTTTTCATGAAACATGTTTCTATGACACTGGAATTAAACC  550

seq1  CAGTAGTGTTCACACTAGTCCCGCGTTCTACTCCATCCTCCATCTTCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTGTTCACACTAGTCCCGCGTTCTACTCCATCCTCCATCTTCAAG  600

seq1  TATGCTGGGATTGAACCCTGGGTTCTATCTGACTTGCTAAGCAAGTGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGGGATTGAACCCTGGGTTCTATCTGACTTGCTAAGCAAGTGATT  650

seq1  TAACGCTGAAAAGCATCCCTAACTTTTATGTCTGACGCTGTTGCCAGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGCTGAAAAGCATCCCTAACTTTTATGTCTGACGCTGTTGCCAGGTT  700

seq1  TACACAAGGCTATGATGTGTATACACTTTTTCTAGTCTGTTGGTTTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAGGCTATGATGTGTATACACTTTTTCTAGTCTGTTGGTTTTCCC  750

seq1  TTCTGCCCCCATATTGACAATGGTTTGGTTTGGTTGGTTGGTTGGTTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  TTCTGCCCCCATATTGACAATGGTTTGGTTTGGTTGGTTGGTTG---GGT  797

seq1  TGGTTGG  807
      |||||||
seq2  TGGTTGG  804

seq1: chr1_64713729_64714796
seq2: B6Ng01-282M16.g_66_1129 (reverse)

seq1  TCTGTCAAATAAATCACAGATTCAAGTCCACCAGTGAAAACAGAGCATGC  50
      |||||||||||||||||||| |||||| || |||||||||||||||||||
seq2  TCTGTCAAATAAATCACAGA-TCAAGT-CATCAGTGAAAACAGAGCATGC  48

seq1  TCTTTTGTGTTTTTATAGCCCTAGAAAGCAATGCCCAATAAAGGCTAGTA  100
      || ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TC-TTTGTGTTTTTATAG-CCTAGAAAGCAATGCCCAATAAAGGCTAGTA  96

seq1  CATACGCAATAAAGCTGTAATCAGAATGTGAGAAAAATT-CCATATACTA  149
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CATACGCAATAAAGCTGTAATCAGAATGTGAGAAAAATTCCCATATACTA  146

seq1  GTAGTTATATTATTGCTACATCTGCCTGATAAACTCAGATGCCTTTTGCA  199
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTAGTTATATTATTGCTACATCTG-CTGATAAACTCAGATGCCTTTTGCA  195

seq1  AGACTGACCATTTTTCCCATCAGAATTGAGGTACAAAGTAATGTTTATTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGACCATTTTTCCCATCAGAATTGAGGTACAAAGTAATGTTTATTT  245

seq1  TTCCAGAGATTTGTCACAGCCATTCTTCCCATTTCTGTGTGAATCATGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGATTTGTCACAGCCATTCTTCCCATTTCTGTGTGAATCATGCT  295

seq1  GGTTCATCTGTTATAGCTCAAGAGAATTACTGCCTATGGTTAACACAAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATCTGTTATAGCTCAAGAGAATTACTGCCTATGGTTAACACAAGC  345

seq1  CATAGTGATAAATGTGTGGACAGCTCATGTGAACATCCACGCAGATTTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGATAAATGTGTGGACAGCTCATGTGAACATCCACGCAGATTTAC  395

seq1  TTCAGGAATGAGAGGAAAGATTTGTGGTGGCAAGGCAGTGAGACATGAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAATGAGAGGAAAGATTTGTGGTGGCAAGGCAGTGAGACATGAGA  445

seq1  ATTTCAGCAATGGTGAAACTAAGGAATGGAGGAAACATTAGAACAACTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGCAATGGTGAAACTAAGGAATGGAGGAAACATTAGAACAACTAG  495

seq1  GTTAAGATTATGGTTGCAAAAGGAGAAACTGAGTCAAGAGGCTTTCGGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGATTATGGTTGCAAAAGGAGAAACTGAGTCAAGAGGCTTTCGGAT  545

seq1  CAGCATTTTGTTAGCTACCTGAGACTCAGTGGATAAGCTCTGGGTTCTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTTGTTAGCTACCTGAGACTCAGTGGATAAGCTCTGGGTTCTGG  595

seq1  ACAAAGGCAGCCTTATGACTGTTAGTAAAATTCCAGGTGACCACAACTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGCAGCCTTATGACTGTTAGTAAAATTCCAGGTGACCACAACTTA  645

seq1  ACCAAAATCTTGGTGATATTCTATATAGAAAAATATAACCTACTGAAGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAATCTTGGTGATATTCTATATAGAAAAATATAACCTACTGAAGCT  695

seq1  ATGGAGATGGCTTAGCAGTTAAGAGCACCCTCTGCATTCACAGAGGCCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGATGGCTTAGCAGTTAAGAGCACCCTCTGCATTCACAGAGGCCCT  745

seq1  GGGTTCAGTTGTTAACATCCACATGAGGTAATACACACCACTGTAACTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCAGTTGTTAACATCCACATGAGGTAATACACACCACTGTAACTCC  795

seq1  AGCTCCAGAAAGCCTTCTCAGGACCCTGCACACATGTACATACACCACTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGAAAGCCTTCTCAGGACCCTGCACACATGTACATACACCACTT  845

seq1  GCCCACCACACATGTAATTAACACTAAAATTGTATTTATATAACATACAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCACACATGTAATTAACACTAAAATTGTATTTATATAACATACAA  895

seq1  ATGGTCCTTTTTATCATGAGTCTTTTCAAGATGTTGTGTAGTTGAAGAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCTTTTTATCATGAGTCTTTTCAAGATGTTGTGTAGTTGAAGAAT  945

seq1  ATTCATTAAGTGACAAAAACAAACGTCAGAACCTACAGTCAATGGCCCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTAAGTGACAAAAACAAACGTCAGAACCTACAGTCAATGGCCCTG  995

seq1  CATTGCATCTATCTACCCTATACAATTTTCATCACCAATAACCAAGGTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCATCTATCTACCCTATACAATTTTCATCACCAATAACCAAGGTGG  1045

seq1  GCACAAACCAAGAGAATTC  1068
      |||||||||||||||||||
seq2  GCACAAACCAAGAGAATTC  1064