BAC Information

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BAC

Clone NameB6Ng01-283G10
Chromosome1 (Build37)
Map Location 58,778,769 - 58,779,917
singlet/doubletsinglet
Overlap geneCflar
Upstream gene2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12
Downstream geneLOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283G10.bB6Ng01-283G10.g
ACCGA082372GA082373
length1,1721,157
definitionB6Ng01-283G10.b B6Ng01-283G10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatgaaaatgatgacacaacatacccaaacttatggaaccatga
aagcaatgctaagaggaactttcatagtgctaagtgtcttgataaagaaa
ttggagagatctcagtctagcaattcaaaagcacacctaaaagttctaga
acaaaaaggagcaaacacacccaagaggagttaatggtaggaaaaattaa
acttggggctaaaatcgataaatcagaaacaaagagaactatacaaagaa
tcaacaaaaccaagagctggtttcttaagaacatcagcaagatagaaaaa
acccttaactaaactgactaaaaggcagagaaacagtacccaaattaaca
gactcagaaatgaaaagggggacataacaacagacactggggaaatgtaa
agaatctaaagcctgtactccacaaaattggaaaatttaagggacatgga
tgattttcttgatagattctacttaaccaaagttgaatcaagatcaggta
aacaatttaaatagtcctataactcctaaggaaatagaagcggtcattaa
aagtttcccaaccaaagaaagcccagagccagattgttttagcacagaat
tctacttgactttcaaagaagaggtaataatttgaggtagcactcctcaa
attattccacaaaatagaaacagaagaaacattgtcaaattcattttatg
aagtcccagtcactttaacacagaaaccacacaaagactcaacaaagaaa
cagaatttcagaccaatttcccttatgaacattgatgcaaaaatattcaa
taaaatactcacaaaccaaatctaagaacacatcataaagattatccact
atggtcaagtatacttcatctcaggatgcagggatcaacatttggaaatc
catcaatggaatctaccataaacaaacttaaaattaaaactaaaaccaca
tgatcatttcattagatgctgaaaaagccttgacaaatccaacatacctt
catgataaaggatacagtacgtacctaagcataataaagcaatttacagc
aggctgatagtcaccaattcaactaagtagagaaactaaggtatcactta
aattcaagacaaacaggcatctatctctcaatctatcatagttaggtcct
agcctagaagcaatagacacct
gaattctggtaccaaagctgaaaagttctaggtgtgtcccacttgtctac
ctactacctgaggggctatagcggtaggtgtcaggaagctaaaggtaaag
gaatttaagattctggccagagaatttggtttcaggcccagtacagagaa
aatgaagcgaagctgggtggtggtgcacacctttagtcccagcactcgga
ggtggggccaggtgaatctctgagtttgaggccaacacggtctacagagc
gagttccaggacagccagggctacatgaagagaagctcagtcttcagaga
ggggtggtgtcgaggtcatttcccggcactgtcacatgtaactcattcat
ccttttacattctgagtgctagctctgagtcacacactcatgtctgacca
ccaggttgcttctgctgtgatctaggcagggaggcccttggaccccagga
ccctttgccagaagcccgtcctgaagtctcttcagcacttccagccattt
tggagatacagatatcaagtggattaccactgacaggcccggagtgattc
tgtctccagacccatctcctttcctgagactgtgttgctattttaagcaa
ttacttcgatgttctcatgacttgctccagaaatgaaactgagactggtt
ttaggttttcggtactcagtcaaggttaaagacaatgtgtaccaaatggg
aaactatgtaggtgtggaaatgaaggggagacaatgagtgaaggtttcat
cagaagaaaggggaattccctttagaatctagaaaaggccagggtccagt
ttctgtctggctacagaagcagtactgaggggttaacatagttaaaggga
taggaacttgatcaatcaagatcgggtgtgtgaaaagcaggagagtctga
gcatgggagccttgtgaggctcttggagcaagagcaactgactgcagaaa
gaaaataagtgatgagctgcatggagtccacgaacaatgggctttgctac
tgacaagccatgactgagttctttccaattgaacttaaaacctctggtct
ggaatctgggctctgttgctctgttgatggtgcaatctgtaactgtggat
tttccacctgtctggactctggaactctttactatgaataaggccttaga
cctgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_58778769_58779917
seq2: B6Ng01-283G10.g_64_1220

seq1  GAATTCTGGTACCAAAGCTGAAAAGTTCTAGGTGTGTCCCACTTGTCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTACCAAAGCTGAAAAGTTCTAGGTGTGTCCCACTTGTCTAC  50

seq1  CTACTACCTGAGGGGCTATAGCGGTAGGTGTCAGGAAGCTAAAGGTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACCTGAGGGGCTATAGCGGTAGGTGTCAGGAAGCTAAAGGTAAAG  100

seq1  GAATTTAAGATTCTGGCCAGAGAATTTGGTTTCAGGCCCAGTACAGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAAGATTCTGGCCAGAGAATTTGGTTTCAGGCCCAGTACAGAGAA  150

seq1  AATGAAGCGAAGCTGGGTGGTGGTGCACACCTTTAGTCCCAGCACTCGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGCGAAGCTGGGTGGTGGTGCACACCTTTAGTCCCAGCACTCGGA  200

seq1  GGTGGGGCCAGGTGAATCTCTGAGTTTGAGGCCAACACGGTCTACAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGCCAGGTGAATCTCTGAGTTTGAGGCCAACACGGTCTACAGAGC  250

seq1  GAGTTCCAGGACAGCCAGGGCTACATGAAGAGAAGCTCAGTCTTCAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAGGACAGCCAGGGCTACATGAAGAGAAGCTCAGTCTTCAGAGA  300

seq1  GGGGTGGTGTCGAGGTCATTTCCCGGCACTGTCACATGTAACTCATTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGTGTCGAGGTCATTTCCCGGCACTGTCACATGTAACTCATTCAT  350

seq1  CCTTTTACATTCTGAGTGCTAGCTCTGAGTCACACACTCATGTCTGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTACATTCTGAGTGCTAGCTCTGAGTCACACACTCATGTCTGACCA  400

seq1  CCAGGTTGCTTCTGCTGTGATCTAGGCAGGGAGGCCCTTGGACCCCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTGCTTCTGCTGTGATCTAGGCAGGGAGGCCCTTGGACCCCAGGA  450

seq1  CCCTTTGCCAGAAGCCCGTCCTGAAGTCTCTTCAGCACTTCCAGCCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGCCAGAAGCCCGTCCTGAAGTCTCTTCAGCACTTCCAGCCATTT  500

seq1  TGGAGATACAGATATCAAGTGGATTACCACTGACAGGCCCGGAGTGATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATACAGATATCAAGTGGATTACCACTGACAGGCCCGGAGTGATTC  550

seq1  TGTCTCCAGACCCATCTCCTTTCCTGAGACTGTGTTGCTATTTTAAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCAGACCCATCTCCTTTCCTGAGACTGTGTTGCTATTTTAAGCAA  600

seq1  TTACTTCGATGTTCTCATGACTTGCTCCAGAAATGAAACTGAGACTGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCGATGTTCTCATGACTTGCTCCAGAAATGAAACTGAGACTGGTT  650

seq1  TTAGGTTTTCGGTACTCAGTCAAGGTTAAAGACAATGTGTACCAAATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTTTCGGTACTCAGTCAAGGTTAAAGACAATGTGTACCAAATGGG  700

seq1  AAACTATGTAGGTGTGGAAATGAAGGGGAGACAATGAGTGAAGGTTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATGTAGGTGTGGAAATGAAGGGGAGACAATGAGTGAAGGTTTCAT  750

seq1  CAGAAGAAAGGGGAATT-CCTTTAGAATCTAGAAAAGGCCAGGGTCCAG-  798
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  CAGAAGAAAGGGGAATTCCCTTTAGAATCTAGAAAAGGCCAGGGTCCAGT  800

seq1  TTCTGTCTGGCTACAGAAGCAGTACTGAGGGGTTAACATAGTT-AAGGGA  847
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTCTGTCTGGCTACAGAAGCAGTACTGAGGGGTTAACATAGTTAAAGGGA  850

seq1  TAGGAACTTGATCAATCAAGATCGGGTGTGTGAAAAGCAGGGAGGAGTCT  897
      |||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  TAGGAACTTGATCAATCAAGATCGGGTGTGTGAAAAGCAGG--AGAGTCT  898

seq1  GAGCAT-GGAGCCTTGTGAGGCTCTTGGGAGCAAGAGCAACTGACTGCAG  946
      |||||| ||||||||||||||||||| |||||||||||||||||||||||
seq2  GAGCATGGGAGCCTTGTGAGGCTCTT-GGAGCAAGAGCAACTGACTGCAG  947

seq1  AA--GAAATAAGTGATGAGCTGCATGGAGTCCACGAACA--TGGCTTGGC  992
      ||   ||||||||||||||||||||||||||||||||||   ||||| ||
seq2  AAAGAAAATAAGTGATGAGCTGCATGGAGTCCACGAACAATGGGCTTTGC  997

seq1  TACTGAC-AGCCATGACTGAGTCCTT--CCATTGAACTTAAAAACCTCTG  1039
      ||||||| |||||||||||||| |||  | ||||||||| ||||||||||
seq2  TACTGACAAGCCATGACTGAGTTCTTTCCAATTGAACTT-AAAACCTCTG  1046

seq1  GTCTGGAATCT-GGCTCTGTTGCTCTGTTGATGGTGCCATCTGTAACCTT  1088
      ||||||||||| ||||||||||||||||||||||||| |||||||||  |
seq2  GTCTGGAATCTGGGCTCTGTTGCTCTGTTGATGGTGCAATCTGTAACTGT  1096

seq1  GTGATTTTCCACCTGTCT-GACTCTGGGACTTCTTATATATGAATAAATG  1137
      | |||||||||||||||| |||||||| || ||||   |||||||||   
seq2  G-GATTTTCCACCTGTCTGGACTCTGGAAC-TCTTTACTATGAATAAGGC  1144

seq1  CTTAGA-CTGATA  1149
      |||||| ||||||
seq2  CTTAGACCTGATA  1157