BAC Information

Click to search

BAC

Clone NameB6Ng01-283H08
Chromosome1 (Build37)
Map Location 148,338,608 - 148,476,997
singlet/doubletdoublet
Overlap geneB830045N13Rik
Upstream geneLOC383571
Downstream geneLOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283H08.bB6Ng01-283H08.g
ACCGA082414GA082415
length1,1211,136
definitionB6Ng01-283H08.b B6Ng01-283H08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,475,879 - 148,476,997)(148,338,608 - 148,339,762)
sequence
gaattcagaaggaaaatttggacagtacttaaatcaggatggaaagagaa
acgcagtggaccataacttaagaaagaccgcaaaacattgctaacaggaa
ggttcatcaaaatgagtatctatatgggtaaatgtagtactgtctaatga
gcaacctgatgatgcatcttttggaactagaaaggaaaggaaatattaaa
attagtatggaaaaatagattattaatgccagggaaattcagattgtgaa
acacagtaaaaagataaaataaaacatcgattctttgaaaagttaagttc
aatggaaatttgtcagctagcctaattaaaaatgattatgagttttgatc
attatgacaattttttagtttaagtaataaatgtttaattaaagaatttt
atatattattaacagcattcatttggccaaatatctacaggtctgtagaa
tcctactgtatataaagtgggaaatatatcaagtatagactatgaaagtg
caaatagcaagtcaaggttagattaaatttttttacactataaaattaac
ttgtttacaaaataggctttgccaatttattattttgaattagaaagtcg
atgactgtgattttttaaaaaaatatgtaccaaagaaatacaaactggat
agccatagtttttcccactcagtaacccagcccatcataatagacactgc
ataaggtaagggagtaggagtccagcactcatggatctccacccctcctc
tccatacactccctccacaggaacccctcctatccactgggcacaccctc
tcctaatcatggatgtgcaagatgttaattagtgatgttaatgatgatga
tgatgacaggaagatgacaacgagtcaatgactatgatcttaacgttgaa
agtgattaagagaactataaaaaggataaaaattataggtagccataata
tatcacagcagaaaaatttcatggtgataaaatgaaaaaaaatggacaga
tttttgaacacacataatctataaagtcaggagagaccaagtacaaaaca
gtgagtgaagcagataaataaccacccaacaagaatagcaaagattagaa
aatattttcacttactgtgct

gaattcacagtagctgaaaagcccagaagatgcatctcgggtcccctaga
ttactccgtggcatatgctgataataaccaagtcacctttagttcttaac
ttcttcattagtgtgagagaacagaataaattatctttataaacgggcta
gtaccaatttttttttacttgagattcaatacacttaatcagtttattta
acagcatcttgatcttataaattaaatgtgaaaattactataaacagagg
tactaaagcaacttcgaatactttcgatgtgaaagctctgaagacaaagt
aaacagcaaggagactaaagtaagtaaacttcaatattgtagtgaggaca
aatatgcatgcataaatttgtgtcaaatttcatctgtaagtaataatata
tattcatatttacatatccagttcatatacatatataaaattttccttaa
tgggttcttaattttatattttcttataacttagatttaatattaaaaat
aacatgacatatagatactttctgtgtaagcaacctgcagcatgatttct
gtatttattttgaggacaatgttgagacagcacagcagggttaattctta
tcaccaagccccaaaagtgaggggtcaatcttggaaccctacatggtgga
aaaggtgattccccatgtgagcttctgcacacacacacacacacacacac
acacacacacacacacaaccaaataatataaaaagaatatgaatgtgttt
ctgttttttcagagggggctctgaatgaccaatccacagatccagctata
tgaagaaccttctctaattctacaatccatctctagcattaaatcatttg
aatgctgctgtggcagattttttttagtgaggtaatatgtgaaatatatt
tatttgtagctatgaaggaagatacgacagaaggcaaagaacacccatca
cttgcttgaatccactaatgagcaccttcagatgagcaccctggatgaaa
gagctaccctctcagcttagactaaacatcctacatcacagcattgtaaa
aaagacatttgctctgaaacagacaggggaccatgtctatggacttacat
gagtatattagagtatcttagattaacgcttactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_148475879_148476997
seq2: B6Ng01-283H08.b_44_1164 (reverse)

seq1  AGCACAGT-AGTGAA---ATATTCTAATCTTTGGCTTATTCTTGTTGGGT  46
      |||||||| ||||||   || ||||||||||||   ||||||||||||||
seq2  AGCACAGTAAGTGAAAATATTTTCTAATCTTTG--CTATTCTTGTTGGGT  48

seq1  -GTTATTTATCTGCTTCAACCTCACTG-TTTGTACTTGGTCTCTCCTGAC  94
       |||||||||||||||||  ||||||| ||||||||||||||||||||||
seq2  GGTTATTTATCTGCTTCA--CTCACTGTTTTGTACTTGGTCTCTCCTGAC  96

seq1  TTTATAGATTATGTGTGTTCAAAAATCTGTCCATTTTTTTTCATTTTATC  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGATTATGTGTGTTCAAAAATCTGTCCATTTTTTTTCATTTTATC  146

seq1  ACCATGAAATTTTTCTGCTGTGATATATTTATGGCTACCTATAA-TTTTA  193
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  ACCATGAAATTTTTCTGCTGTGATATA-TTATGGCTACCTATAATTTTTA  195

seq1  TCCTTTTTATAGTTCTCTTAATCACTTTCAACGTTAAGATCATAGTCATT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTATAGTTCTCTTAATCACTTTCAACGTTAAGATCATAGTCATT  245

seq1  GACTCGTTGTCATCTTCCTGTCATCATCATCATCATTAACATCACTAATT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCGTTGTCATCTTCCTGTCATCATCATCATCATTAACATCACTAATT  295

seq1  AACATCTTGCACATCCATGATTAGGAGAGGGTGTGCCCAGTGGATAGGAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTTGCACATCCATGATTAGGAGAGGGTGTGCCCAGTGGATAGGAG  345

seq1  GGGTTCCTGTGGAGGGAGTGTATGGAGAGGAGGGGTGGAGATCCATGAGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCTGTGGAGGGAGTGTATGGAGAGGAGGGGTGGAGATCCATGAGT  395

seq1  GCTGGACTCCTACTCCCTTACCTTATGCAGTGTCTATTATGATGGGCTGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGACTCCTACTCCCTTACCTTATGCAGTGTCTATTATGATGGGCTGG  445

seq1  GTTACTGAGTGGGAAAAACTATGGCTATCCAGTTTGTATTTCTTTGGTAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGAGTGGGAAAAACTATGGCTATCCAGTTTGTATTTCTTTGGTAC  495

seq1  ATATTTTTTTAAAAAATCACAGTCATCGACTTTCTAATTCAAAATAATAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTTTAAAAAATCACAGTCATCGACTTTCTAATTCAAAATAATAA  545

seq1  ATTGGCAAAGCCTATTTTGTAAACAAGTTAATTTTATAGTGTAAAAAAAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCAAAGCCTATTTTGTAAACAAGTTAATTTTATAGTGTAAAAAAAT  595

seq1  TTAATCTAACCTTGACTTGCTATTTGCACTTTCATAGTCTATACTTGATA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTAACCTTGACTTGCTATTTGCACTTTCATAGTCTATACTTGATA  645

seq1  TATTTCCCACTTTATATACAGTAGGATTCTACAGACCTGTAGATATTTGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCCACTTTATATACAGTAGGATTCTACAGACCTGTAGATATTTGG  695

seq1  CCAAATGAATGCTGTTAATAATATATAAAATTCTTTAATTAAACATTTAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGAATGCTGTTAATAATATATAAAATTCTTTAATTAAACATTTAT  745

seq1  TACTTAAACTAAAAAATTGTCATAATGATCAAAACTCATAATCATTTTTA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAACTAAAAAATTGTCATAATGATCAAAACTCATAATCATTTTTA  795

seq1  ATTAGGCTAGCTGACAAATTTCCATTGAACTTAACTTTTCAAAGAATCGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGCTAGCTGACAAATTTCCATTGAACTTAACTTTTCAAAGAATCGA  845

seq1  TGTTTTATTTTATCTTTTTACTGTGTTTCACAATCTGAATTTCCCTGGCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTTTATCTTTTTACTGTGTTTCACAATCTGAATTTCCCTGGCA  895

seq1  TTAATAATCTATTTTTCCATACTAATTTTAATATTTCCTTTCCTTTCTAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATCTATTTTTCCATACTAATTTTAATATTTCCTTTCCTTTCTAG  945

seq1  TTCCAAAAGATGCATCATCAGGTTGCTCATTAGACAGTACTACATTTACC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAAGATGCATCATCAGGTTGCTCATTAGACAGTACTACATTTACC  995

seq1  CATATAGATACTCATTTTGATGAACCTTCCTGTTAGCAATGTTTTGCGGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGATACTCATTTTGATGAACCTTCCTGTTAGCAATGTTTTGCGGT  1045

seq1  CTTTCTTAAGTTATGGTCCACTGCGTTTCTCTTTCCATCCTGATTTAAGT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTAAGTTATGGTCCACTGCGTTTCTCTTTCCATCCTGATTTAAGT  1095

seq1  ACTGTCCAAATTTTCCTTCTGAATTC  1119
      ||||||||||||||||||||||||||
seq2  ACTGTCCAAATTTTCCTTCTGAATTC  1121


seq1: chr1_148338608_148339762
seq2: B6Ng01-283H08.g_63_1198

seq1  GAATTCACAGTAGCTGAAAAGCCCAGAAGATGCATCTCGGGTCCCCTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTAGCTGAAAAGCCCAGAAGATGCATCTCGGGTCCCCTAGA  50

seq1  TTACTCCGTGGCATATGCTGATAATAACCAAGTCACCTTTAGTTCTTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCGTGGCATATGCTGATAATAACCAAGTCACCTTTAGTTCTTAAC  100

seq1  TTCTTCATTAGTGTGAGAGAACAGAATAAATTATCTTTATAAACGGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATTAGTGTGAGAGAACAGAATAAATTATCTTTATAAACGGGCTA  150

seq1  GTACCAATTTTTTTTTACTTGAGATTCAATACACTTAATCAGTTTATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAATTTTTTTTTACTTGAGATTCAATACACTTAATCAGTTTATTTA  200

seq1  ACAGCATCTTGATCTTATAAATTAAATGTGAAAATTACTATAAACAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATCTTGATCTTATAAATTAAATGTGAAAATTACTATAAACAGAGG  250

seq1  TACTAAAGCAACTTCGAATACTTTCGATGTGAAAGCTCTGAAGACAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAGCAACTTCGAATACTTTCGATGTGAAAGCTCTGAAGACAAAGT  300

seq1  AAACAGCAAGGAGACTAAAGTAAGTAAACTTCAATATTGTAGTGAGGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCAAGGAGACTAAAGTAAGTAAACTTCAATATTGTAGTGAGGACA  350

seq1  AATATGCATGCATAAATTTGTGTCAAATTTCATCTGTAAGTAATAATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCATGCATAAATTTGTGTCAAATTTCATCTGTAAGTAATAATATA  400

seq1  TATTCATATTTACATATCCAGTTCATATACATATATAAAATTTTCCTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATATTTACATATCCAGTTCATATACATATATAAAATTTTCCTTAA  450

seq1  TGGGTTCTTAATTTTATATTTTCTTATAACTTAGATTTAATATTAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCTTAATTTTATATTTTCTTATAACTTAGATTTAATATTAAAAAT  500

seq1  AACATGACATATAGATACTTTCTGTGTAAGCAACCTGCAGCATGATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGACATATAGATACTTTCTGTGTAAGCAACCTGCAGCATGATTTCT  550

seq1  GTATTTATTTTGAGGACAATGTTGAGACAGCACAGCAGGGTTAATTCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATTTTGAGGACAATGTTGAGACAGCACAGCAGGGTTAATTCTTA  600

seq1  TCACCAAGCCCCAAAAGTGAGGGGTCAATCTTGGAACCCTACATGGTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAGCCCCAAAAGTGAGGGGTCAATCTTGGAACCCTACATGGTGGA  650

seq1  AAAGGTGATTCCCCATGTGAGCTTCTGCACACACACACACACACACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGATTCCCCATGTGAGCTTCTGCACACACACACACACACACACAC  700

seq1  ACACACACACACACACAACCAAATAATATAAAAAGAATATGAATGTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACAACCAAATAATATAAAAAGAATATGAATGTGTTT  750

seq1  CTGTTTTTTCAGAGGGGGCTCTGAATGACCAATCCACAGATCCAGCTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTTCAGAGGGGGCTCTGAATGACCAATCCACAGATCCAGCTATA  800

seq1  TGAAGAACCTTCTCTAATTCTACAATCCATCTCTAGCATTAAATCATTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAACCTTCTCTAATTCTACAATCCATCTCTAGCATTAAATCATTTG  850

seq1  AATGCTGCTGTGGCAGA-TTTTTTTAGTGAGGTAATATGTGAAATATATT  899
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATGCTGCTGTGGCAGATTTTTTTTAGTGAGGTAATATGTGAAATATATT  900

seq1  TATTTGTAGCTATGAAGGAAGATACGACAAGAAGGCAAAGAACACCCATC  949
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TATTTGTAGCTATGAAGGAAGATACGAC-AGAAGGCAAAGAACACCCATC  949

seq1  ACTTGCTTGAAATCCACTAAATGAGCACCTTCAGATGAGCACCCTGGAAT  999
      ||||||||| |||||||| |||||||||||||||||||||||||||| ||
seq2  ACTTGCTTG-AATCCACT-AATGAGCACCTTCAGATGAGCACCCTGG-AT  996

seq1  GAAAGAAGCTACCCTCTCAGCTTAGAACCAAAACATCTTACATTCACAAG  1049
      ||||| ||||||||||||||||||||  | ||||||| |||| |||||  
seq2  GAAAG-AGCTACCCTCTCAGCTTAGA--CTAAACATCCTACA-TCACA--  1040

seq1  GCATTGTAAAAAAGACATTTGCTCTGAAAACAAGACAGGGGACACAATGT  1099
      |||||||||||||||||||||||||||||   |||||||||  || ||||
seq2  GCATTGTAAAAAAGACATTTGCTCTGAAA--CAGACAGGGG--ACCATGT  1086

seq1  CTATGACATTACATGAAGGTATATTTGAGTAATCATATAGTTTAACAGCT  1149
      |||||   ||||||||  ||||||| |||| |||   ||| ||||| |||
seq2  CTATGGACTTACATGA--GTATATTAGAGT-ATC--TTAGATTAAC-GCT  1130

seq1  TACTCT  1155
      ||||||
seq2  TACTCT  1136


| Home | SequenceCutter | Blast | Download |