BAC Information

Click to search

BAC

Clone NameB6Ng01-283L23
Chromosome1 (Build37)
Map Location 14,619,924 - 14,775,286
singlet/doubletdoublet
Overlap geneMsc
Upstream geneLactb2, Xkr9, LOC100039843, EG433273, LOC100039859, LOC100039869, Eya1, LOC665391
Downstream geneSmt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959, Kcnb2, Ppia-ps1_109.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283L23.bB6Ng01-283L23.g
ACCGA082627GA082628
length1,0021,055
definitionB6Ng01-283L23.b B6Ng01-283L23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,774,422 - 14,775,286)(14,619,924 - 14,620,986)
sequence
gaattctttctggattttcttgagtctagagctctgcatctaagcctaca
tcctgagagaacgtatagtaagagtctctccaggatacccaagttgagag
ttctggttaatcagtgctaataccccacagttcatcactccagtcttctg
ccactctcttgtttcttcccacctctaggaaactgaattgactacaggga
gtcttttacacaatgtgcccttggcagatccaaatctgtagcaactttta
gagtgcccagcgttttattggaagtcagagtcagccctttccttctaggg
caagttgaatcaaaactgtttctggaaaggttgagcaatttcttttcaga
tatattatcaaacctctgttctattcagatttagaccagaataagttctg
aactggaaaatggctaaactaaatctataaacacaatatccaataatgta
tgttaaaagttatgtagcttaaagctatttgttttcttcattttaggcta
tattggaaataacttttaaagaacatataaaatagaaaaatgcaggagga
gggatgcaactgcatatcattgttttaggtgaaatcagctagactcaaaa
ggaaaaaatccctgactttatcttatatacagatcatcctgagtgaggta
acacattcacaaaggaactcacacaatatgtactcactgataagtggata
ttagcccaaaacctaggatacccaagatataagatacaatttcctaaaca
catgaaactcaagaaaaatgaagactgaagtgtggacactatgcccctcc
ttagaagtgggaacaaaacacccatggaaaggagttacagagacaaagtt
tggagctgagatgaaaggatggaccatgtagagactgccatatccaggga
tccaccccataatcagcatccaaacgctgacaccattgcatacactagca
agattttatcgaaaggacccagatgtagctgtctcttgtgagactatgcc
gg

gaattctgataaattttccctttacatgtgaaattgttgagcataatatt
ttatttcctttagatataagtaaagcgaaagtgaaagacacaaccaagta
tgaaatccataatttgtactagagaaatctccaaaaccattgttaaaaca
atcttcactcatatttttattaatacattgaggcaaaactattagtaaaa
atgtcatgaccaggcacagtggtggaaagacttggacaagccctactata
tatttgagaacatagacatcagtaaatgctgacagtaggaaatacaattc
aaacttctggtgacaggtgtgaagttgctgaaacaaaaggtctgtttttc
ctactgatgctatagaaaaatgtttacagaataggagccgctgtaccctt
gtgatgctgtgttagggccaggtcactcctcatagtgcagtgttataatg
accttgtctttttcatcaatttctttcgaaacctacctttcgtatttcat
tcacacttcatgtataattgggagagggaaactgctaaattgatcagttc
tacaagaggggaatatatcttgatatgaagtgttattactgttgacagtc
caataagcaaggcacagtgggagaatttatggcagtacttgaaatttgct
gaagcaattttcaacacactgtatttcattctcagacaaaactaaagcca
ttctttgcactctttttttttttttttttttaaaaagaagaagtcaggac
ataaagggcaacagagacttctccaaataacttgacactattcaatttca
tcaacattttaaaaccgggctatgtggggaactgggacttttaattggga
tgtctagccacttgataattgtagaggttattttacacagaatatctttg
gtaataacattacataagttgcataaatgccctagttttcaaattgcctt
ggtgggaatactgatagtcacacttcctgagcactgtgggcttgctgttg
gcacatagacaatcttactggctagagcttgagcatacataaactatgct
ctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_14774422_14775286
seq2: B6Ng01-283L23.b_64_929 (reverse)

seq1  TCTACATGGTCCATCCTTTCATCTCAGCTCCAAACTTTGTCTCTGTAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATGGTCCATCCTTTCATCTCAGCTCCAAACTTTGTCTCTGTAACT  50

seq1  CC-TTCCATGGGTGTTTTGTTCCCACTTCTAAGGAGGGGCATAGTGTCCA  99
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCATGGGTGTTTTGTTCCCACTTCTAAGGAGGGGCATAGTGTCCA  100

seq1  CACTTCAGTCTTCATTTTTCTTGAGTTTCATGTGTTTAGGAAATTGTATC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAGTCTTCATTTTTCTTGAGTTTCATGTGTTTAGGAAATTGTATC  150

seq1  TTATATCTTGGGTATCCTAGGTTTTGGGCTAATATCCACTTATCAGTGAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCTTGGGTATCCTAGGTTTTGGGCTAATATCCACTTATCAGTGAG  200

seq1  TACATATTGTGTGAGTTCCTTTGTGAATGTGTTACCTCACTCAGGATGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTGTGTGAGTTCCTTTGTGAATGTGTTACCTCACTCAGGATGAT  250

seq1  CTGTATATAAGATAAAGTCAGGGATTTTTTCCTTTTGAGTCTAGCTGATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATATAAGATAAAGTCAGGGATTTTTTCCTTTTGAGTCTAGCTGATT  300

seq1  TCACCTAAAACAATGATATGCAGTTGCATCCCTCCTCCTGCATTTTTCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTAAAACAATGATATGCAGTTGCATCCCTCCTCCTGCATTTTTCTA  350

seq1  TTTTATATGTTCTTTAAAAGTTATTTCCAATATAGCCTAAAATGAAGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATGTTCTTTAAAAGTTATTTCCAATATAGCCTAAAATGAAGAAA  400

seq1  ACAAATAGCTTTAAGCTACATAACTTTTAACATACATTATTGGATATTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAGCTTTAAGCTACATAACTTTTAACATACATTATTGGATATTGT  450

seq1  GTTTATAGATTTAGTTTAGCCATTTTCCAGTTCAGAACTTATTCTGGTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAGATTTAGTTTAGCCATTTTCCAGTTCAGAACTTATTCTGGTCT  500

seq1  AAATCTGAATAGAACAGAGGTTTGATAATATATCTGAAAAGAAATTGCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGAATAGAACAGAGGTTTGATAATATATCTGAAAAGAAATTGCTC  550

seq1  AACCTTTCCAGAAACAGTTTTGATTCAACTTGCCCTAGAAGGAAAGGGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTCCAGAAACAGTTTTGATTCAACTTGCCCTAGAAGGAAAGGGCT  600

seq1  GACTCTGACTTCCAATAAAACGCTGGGCACTCTAAAAGTTGCTACAGATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGACTTCCAATAAAACGCTGGGCACTCTAAAAGTTGCTACAGATT  650

seq1  TGGATCTGCCAAGGGCACATTGTGTAAAAGACTCCCTGTAGTCAATTCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTGCCAAGGGCACATTGTGTAAAAGACTCCCTGTAGTCAATTCAG  700

seq1  TTTCCTAGAGGTGGGAAGAAACAAGAGAGTGGCAGAAGACTGGAGTGATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAGAGGTGGGAAGAAACAAGAGAGTGGCAGAAGACTGGAGTGATG  750

seq1  AACTGTGGGGTATTAGCACTGATTAACCAGAACTCTCAACTTGGGTATCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGGGGTATTAGCACTGATTAACCAGAACTCTCAACTTGGGTATCC  800

seq1  TGGAGAGACTCTTACTATACGTTCTCTCAGGATGTAGGCTTAGATGCAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGACTCTTACTATACGTTCTCTCAGGATGTAGGCTTAGATGCAGA  850

seq1  GCTCTAGACTCAAGAA  865
      ||||||||||||||||
seq2  GCTCTAGACTCAAGAA  866


seq1: chr1_14619924_14620986
seq2: B6Ng01-283L23.g_68_1122

seq1  GAATTCTGATAAATTTTCCCTTTACATGTGAAATTGTTGAGCATAATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATAAATTTTCCCTTTACATGTGAAATTGTTGAGCATAATATT  50

seq1  TTATTTCCTTTAGATATAAGTAAAGCGAAAGTGAAAGACACAACCAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCTTTAGATATAAGTAAAGCGAAAGTGAAAGACACAACCAAGTA  100

seq1  TGAAATCCATAATTTGTACTAGAGAAATCTCCAAAACCATTGTTAAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCCATAATTTGTACTAGAGAAATCTCCAAAACCATTGTTAAAACA  150

seq1  ATCTTCACTCATATTTTTATTAATACATTGAGGCAAAACTATTAGTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCACTCATATTTTTATTAATACATTGAGGCAAAACTATTAGTAAAA  200

seq1  ATGTCATGACCAGGCACAGTGGTGGAAAGACTTGGACAAGCCCTACTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATGACCAGGCACAGTGGTGGAAAGACTTGGACAAGCCCTACTATA  250

seq1  TATTTGAGAACATAGACATCAGTAAATGCTGACAGTAGGAAATACAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAGAACATAGACATCAGTAAATGCTGACAGTAGGAAATACAATTC  300

seq1  AAACTTCTGGTGACAGGTGTGAAGTTGCTGAAACAAAAGGTCTGTTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCTGGTGACAGGTGTGAAGTTGCTGAAACAAAAGGTCTGTTTTTC  350

seq1  CTACTGATGCTATAGAAAAATGTTTACAGAATAGGAGCCGCTGTACCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGATGCTATAGAAAAATGTTTACAGAATAGGAGCCGCTGTACCCTT  400

seq1  GTGATGCTGTGTTAGGGCCAGGTCACTCCTCATAGTGCAGTGTTATAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGCTGTGTTAGGGCCAGGTCACTCCTCATAGTGCAGTGTTATAATG  450

seq1  ACCTTGTCTTTTTCATCAATTTCTTTCGAAACCTACCTTTCGTATTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTCTTTTTCATCAATTTCTTTCGAAACCTACCTTTCGTATTTCAT  500

seq1  TCACACTTCATGTATAATTGGGAGAGGGAAACTGCTAAATTGATCAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTTCATGTATAATTGGGAGAGGGAAACTGCTAAATTGATCAGTTC  550

seq1  TACAAGAGGGGAATATATCTTGATATGAAGTGTTATTACTGTTGACAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAGGGGAATATATCTTGATATGAAGTGTTATTACTGTTGACAGTC  600

seq1  CAATAAGCAAGGCACAGTGGGAGAATTTATGGCAGTACTTGAAATTTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGCAAGGCACAGTGGGAGAATTTATGGCAGTACTTGAAATTTGCT  650

seq1  GAAGCAATTTTCAACACACTGTATTTCATTCTCAGACAAAACTAAAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAATTTTCAACACACTGTATTTCATTCTCAGACAAAACTAAAGCCA  700

seq1  TTCTTTGCACTCTTTTTTTTTTTTTTTTTTTTAAAAAGAAGAAGTCAGGA  750
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGCACTC-TTTTTTTTTTTTTTTTTTTAAAAAGAAGAAGTCAGGA  749

seq1  CATAAAGGGCAACAGAGACTTCTCCAAATAACTTGACACTATTCAATTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGGGCAACAGAGACTTCTCCAAATAACTTGACACTATTCAATTTC  799

seq1  ATCAACATTTTAAAACCGGGCTATGT-GGGAACTGGGACTTTTAATTGGG  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATCAACATTTTAAAACCGGGCTATGTGGGGAACTGGGACTTTTAATTGGG  849

seq1  ATGTCTAGCCACTTGATAATTGTAAGAGGTTATTTTACACAGAATATCTT  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATGTCTAGCCACTTGATAATTGT-AGAGGTTATTTTACACAGAATATCTT  898

seq1  TGGTAATAACATTACAT-AGTTGCATAAATGCCCTAGTTTTCAAATTGCC  948
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGGTAATAACATTACATAAGTTGCATAAATGCCCTAGTTTTCAAATTGCC  948

seq1  T--GTGGGAATACTGATAGTCACACCTTCCTTGAGCACTGTGGGCTTGCT  996
      |  ||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  TTGGTGGGAATACTGATAGTCACA-CTTCC-TGAGCACTGTGGGCTTGCT  996

seq1  GGTTGGCACATAGACAAATCTTAACTGGCTAGAAAGCCTTGAGGCATACA  1046
       |||||||||||||| |||||| ||||||||||    ||||| |||||||
seq2  -GTTGGCACATAGAC-AATCTT-ACTGGCTAGA---GCTTGA-GCATACA  1039

seq1  TAAACCTATGCTCTAGA  1063
      |||| ||||||||||||
seq2  TAAA-CTATGCTCTAGA  1055


| Home | SequenceCutter | Blast | Download |