BAC Information

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BAC

Clone NameB6Ng01-284H17
Chromosome14 (Build37)1 (Build37)
Map Location 54,441,668 - 54,442,45617,310,306 - 17,310,831
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777
Downstream geneA630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284H17.bB6Ng01-284H17.g
ACCGA083172GA083173
length1,192940
definitionB6Ng01-284H17.b B6Ng01-284H17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,441,668 - 54,442,456)(17,310,306 - 17,310,831)
sequence
gaattcctttagcctattttagcctatttttatcatggaaagttttattt
ttccttcaattttgacatatagctttgctgggtatagtggcctggatctg
tagctattgtctctcagagctttaaatatatctgtccagacccttctggc
ctttaaagtttcagttgaatgaactgctggcatcttgatgccctgcattc
atatgtgacttggagtttctctctggctggtttcaacatgctttctttgt
gttgtgtatatagtgttttagttacaacataacaagaggaattttttatg
atcttatctgtttggaatcctaaatgcctcctggatctagactggaattt
cttttcctacctctgacatttcacatattcttctaaaaacatggactgtg
cctttggaactatattcttcttcagagcctacaaacaaaattttctcctt
tcacagtgtcacccatatcttgcagttcccacgggtgcctttctttgtct
ttgttgatggctctttcttccaccttgtccccacagtccctctcttgatc
cattctactgctgacactttctacagtcttttgtccctagcatttcagat
tggctttcttcagtgttgccatccctttattgaactcctctttcatcact
tcttcatttcattgatgtgtttgtgttctctgccagcagcttatgttctc
ctttgatttctttcaacacacttattacaagctctgtctgagattgcatc
tggctctgtctgtcttgatgcctttactgtaggattagcgcttttttttt
tttttgaagagttacattatcttgatttttcgtgtttcttgtgttgttgt
gctgagatttacatatcttgtgttctttctttgatttgcttatgtctttt
aaacagttatattcttttaaaatattagcaatgttcatgtgggggcttgg
gatatagtagattcccagaaggatactataaatcttagaatggaaggatg
cttgatataaatttttatattttgagtatgacttgtacatatggagcccc
caccctccttttttatatttaccactaccataggatattatggccttatc
agtatggataatgccatcaattggaccttcattacctggtggggccaggg
acacaaccatattagtatggcatataccttggtgtttaagtt
gaattcagtaacactaagacagctttccaaaaacaaacaaaaccaaaatt
ggacagaaaatttctgatttaatataaaaacacatgcaaaactttttaat
aataattccaaatattagtaatcttaattcactaatcaaaaaaaccacag
actagttgattgggtacaaaaacaggaaccttcctttttttttttttttt
tttgcctccaacaatcacaaaagacagacactgccttacactgaaaggat
gagaaaggtattccaagcaaatggatccaggaaaaaagcaggagttgctg
ttctaatttttgattaaatggacttcaaaaccattgagcaaagataaaga
tggccacttcatattgattaaggtaacaatccatcaggagggcatgacaa
ttatgaacatatggtgcaaacacagacacactcaattttataaagcaaag
ctgttagattatagaactcatagttaagacactttggactttcaaagtgt
tgaaatttttagaaatttggggaacttttgaattggattgtgtgttatat
tatgaaaaaaaaaaacccagcaatgtgggacacttcagctaagtggcaga
aggttatggtttaaaagtgacatgtcaggttaagtagattggtgttgtga
caattcaagttgttaaatttgtatagtacatagtaacctaggaaaaaccc
ccaaatgaaagactgtgtagattatgttggcctgtgtgcatgtttatggg
ggccttgtcttcattacatattactcgatggttgaagactcaactcgtga
ccagcatcattccctggttctagagctttgggttgcatagagtaaagaaa
gatagtggagtactaaacacgcatgcactcagtcttttctgctcttgact
gcgggtattggctagctgctcaagatcctgccattgtgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_54441668_54442456
seq2: B6Ng01-284H17.b_424_1238

seq1  TTCTTCTAAAAACATGGACTGTGCCTTTGGAACTATATTCTTCTTCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTAAAAACATGGACTGTGCCTTTGGAACTATATTCTTCTTCAGAG  50

seq1  CCTACAAACAAAATTTTCTCCTTTCACAGTGTCACCCATATCTTGCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAAACAAAATTTTCTCCTTTCACAGTGTCACCCATATCTTGCAGTT  100

seq1  CCCACGGGTGCCTTTCTTTGTCTTTGTTGATGGCTCTTTCTTCCACCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGGGTGCCTTTCTTTGTCTTTGTTGATGGCTCTTTCTTCCACCTTG  150

seq1  TCCCCACAGTCCCTCTCTTGATCCATTCTACTGCTGACACTTTCTACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACAGTCCCTCTCTTGATCCATTCTACTGCTGACACTTTCTACAGT  200

seq1  CTTTTGTCCCTAGCATTTCAGATTGGCTTTCTTCAGTGTTGCCATCCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTCCCTAGCATTTCAGATTGGCTTTCTTCAGTGTTGCCATCCCTT  250

seq1  TATTGAACTCCTCTTTCATCACTTCTTCATTTCATTGATGTGTTTGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAACTCCTCTTTCATCACTTCTTCATTTCATTGATGTGTTTGTGTT  300

seq1  CTCTGCCAGCAGCTTATGTTCTCCTTTGATTTCTTTCAACACACTTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCAGCAGCTTATGTTCTCCTTTGATTTCTTTCAACACACTTATTA  350

seq1  CAAGCTCTGTCTGAGATTGCATCTGGCTCTGTCTGTCTTGATGCCTTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCTGTCTGAGATTGCATCTGGCTCTGTCTGTCTTGATGCCTTTAC  400

seq1  TGTAGGATTAGCGC--TTTTTTTTTTTTGAAGAGTTACATTATCTTGATT  448
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  TGTAGGATTAGCGCTTTTTTTTTTTTTTGAAGAGTTACATTATCTTGATT  450

seq1  TTTCGTGTTTCTTGTGTTGTTGTGCTGAGATTTACATATCTTGTGTTCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTGTTTCTTGTGTTGTTGTGCTGAGATTTACATATCTTGTGTTCTT  500

seq1  TCTTTGATTTGCTTATGTCTTTTAAACAGTTATATTCTTTTAAAATATTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGATTTGCTTATGTCTTTTAAACAGTTATATTCTTTTAAAATATTA  550

seq1  GCAATGTTCATGT-GGGGCTT-GGATATAGTAGATT-CCAGAAGATAACT  595
      ||||||||||||| ||||||| |||||||||||||| |||||||   |||
seq2  GCAATGTTCATGTGGGGGCTTGGGATATAGTAGATTCCCAGAAGGATACT  600

seq1  ATAAATCTTAGAATGGAA-GATGCTTGATATAAA-TTTTATA-TTTGAGT  642
      |||||||||||||||||| ||||||||||||||| ||||||| |||||||
seq2  ATAAATCTTAGAATGGAAGGATGCTTGATATAAATTTTTATATTTTGAGT  650

seq1  ATGAC-TGTACATAT-GAG-CACCACC--TCTTTTTAATATTTA-CACTA  686
      ||||| ||||||||| ||| | |||||   |||||| ||||||| |||||
seq2  ATGACTTGTACATATGGAGCCCCCACCCTCCTTTTTTATATTTACCACTA  700

seq1  -CATA-GATATTATG---CTATCAATTAATGATAATG-CATCATTTG--A  728
       |||| |||||||||    |||| | ||  ||||||| ||||| |||   
seq2  CCATAGGATATTATGGCCTTATC-AGTATGGATAATGCCATCAATTGGAC  749

seq1  CTTCAATAACTGTTGGG--CAGGAACA-ACCAATATTAGTATGGCATATA  775
      ||||| || ||| ||||  |||| ||| | | ||||||||||||||||||
seq2  CTTCATTACCTGGTGGGGCCAGGGACACAACCATATTAGTATGGCATATA  799

seq1  C--TTGTGTTTTAGTT  789
      |  | |||||| ||||
seq2  CCTTGGTGTTTAAGTT  815

seq1: chr1_17310306_17310831
seq2: B6Ng01-284H17.g_117_640 (reverse)

seq1  TGCTGGG-GTTTTTTTTTCATAATATAACACACAATCCAATTCAAAAGTT  49
      |||||||  |||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGTTTTTTTTTTTCATAATATAACACACAATCCAATTCAAAAGTT  50

seq1  CCCCAAATTTCTAAAAATTTCAACACTTTGAAAGTCCAAAGTGTCTTAAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAATTTCTAAAAATTTCAACACTTTGAAAGTCCAAAGTGTCTTAAC  100

seq1  TATGAGTTCTATAATCTAACAGCTTTGCTTTATAAAATTGAGTGTGTCTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTTCTATAATCTAACAGCTTTGCTTTATAAAATTGAGTGTGTCTG  150

seq1  TGTTTGCACCATATGTTCATAATTGTCATGCCCTCCTGATGGATTGTTAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCACCATATGTTCATAATTGTCATGCCCTCCTGATGGATTGTTAC  200

seq1  CTTAATCAATATGAAGTGGCCATCTTTATCTTTGCTCAATGGTTTTGAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCAATATGAAGTGGCCATCTTTATCTTTGCTCAATGGTTTTGAAG  250

seq1  TCCATTTAATCAAAAATTAGAACAGCAACTCCTGCTTTTTTCCTGGATCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTAATCAAAAATTAGAACAGCAACTCCTGCTTTTTTCCTGGATCC  300

seq1  ATTTGCTTGGAATACCTTTCTCATCCTTTCAGTGTAAGGCAGTGTCTGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTGGAATACCTTTCTCATCCTTTCAGTGTAAGGCAGTGTCTGTC  350

seq1  TTTTGTGATTGTTGGAGGCAAAAAAAAAAAAAAAAAAAAAAAGGAAGGTT  399
      |||||||||||||||||||    |||||||||||||||||||||||||||
seq2  TTTTGTGATTGTTGGAGGC----AAAAAAAAAAAAAAAAAAAGGAAGGTT  396

seq1  CCTGTTTTTGTACCCAATCAACTAGTCTGTGG-CTTTTTGATTAGTGAAT  448
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  CCTGTTTTTGTACCCAATCAACTAGTCTGTGGTTTTTTTGATTAGTGAAT  446

seq1  TAAGATTACTAATATTTGGAATTATTATTAAAAAGTTTTGCATGTGTTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTACTAATATTTGGAATTATTATTAAAAAGTTTTGCATGTGTTTT  496

seq1  TATATTAAATCAGAAATTTTCTGTCCAA  526
      ||||||||||||||||||||||||||||
seq2  TATATTAAATCAGAAATTTTCTGTCCAA  524