BAC Information

Click to search

BAC

Clone NameB6Ng01-284J01
Chromosome1 (Build37)
Map Location 31,428,190 - 31,429,332
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262
Downstream geneLOC624275, LOC666056, LOC100041238, Khdrbs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284J01.bB6Ng01-284J01.g
ACCGA083234GA083235
length1,1351,181
definitionB6Ng01-284J01.b B6Ng01-284J01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccatgctctctagtgaaaacatgagccagggtacattgacactg
atccctgctgttggatagctacagacccaagcatggccctcagcagcagc
ttgggctgggacttcaccatggcctcaggtggcagggatggccactcaga
acaggcttctcctcttcactcttgagtctccggtaccatttctcttcata
acactcatgctgctccacatctctttctctaccatctgaccaccatatat
gcatatattgtggtggctctactgtggactggacatgtagccagaagggc
cctgcgtgacaccctctttctgtgctttgtgacatggtaggaagaaaata
ttgatggcctacctgtgctgtgtgctggaaggcaggtttgtgggtggtat
ggtcattggaaggctctgtctgttttccttctcccaagaaaattaaataa
aatctgtcttctctgttggtgctgcctgaacttgacttgatttttctttt
atgagtcctatgcaaaagacagttttggtcaccaagtcaggcatcaggct
acaatgaacaaaggactaccatctgctctgcctttgactgatgaaagaac
accaccaccaacaaggtgtctctttgcttatttcaagggattatgaacat
acattattataaacaggatttccttttaggatgagaactggcccaagttg
gaaggtaataacttctacaacatgaatgcaaaaatcttcaggggaggact
gattttggcatagacatacacttgggtttaagtgcatatacttagcttaa
aaggctggcatattagaaaagcaaatattatttaaaaacagtgaaacagc
acatctggtgccacagcctgaacaatctgagcattagaaattaatagtgt
gtttcctttgtagaaaagacatgtgataaattgagttgctgttcaattcc
ccttctccatcttaggtagccagcatctgcccagggaactgtctgtcaca
tttaaatgggttacatcagttaaagtcatcagataaccctcacagagtct
cagtgctaactcagttccagtgaatccctcgaaggtgtggtctagcttac
ctcctaggtgatttgacaggtctgtcagagacaac
gaattctcacctgaggaataccgaatggctgagaagcatctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacttaactccaatcagaatggctaagatgaaaaattcaggtgacatc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcctgcagtacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
ggaactcgcacaatatgtactcactgataagtggatattagcccagaaac
ttaggatacccaagatataagatacaatttgctaaacacatgaaattcaa
gaagaacgaagaccaaagtgtgcacactttgccccttcttagaaatggga
acaaaacacccatggaaggagttacagagacaaaatttggagctgcgacg
aaagaatggaccatctagtgattgccatatgcacggatccataccataat
cagcttccaaatgctgacaccattgcatacattagcaagattttgctgaa
aggatccagatatagttgtctcttgtgagactatgccggggcctagcaaa
cacagaagtggatatcacagtcagctaattggatggatcaccacgggccc
ccaatgggaggagctagagaagccaccaaggaagcttaaaggatcttgca
acccctataggtggaacaatatgaactaaccagttaccccgagctctggt
cttctagcctgcattatgtatcaaaaggatgccttagttcaggcaatcac
tgccaaggaaaggccatgtttgtgcagctgaatgcctagtacaaggtacc
ccatggactaacaatagtggaattgtgtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_31428190_31429332
seq2: B6Ng01-284J01.b_51_1185

seq1  GAATTCCCATGCTCTCTAGTGAAAACATGAGCCAGGG-ACATTGACACTG  49
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAATTCCCATGCTCTCTAGTGAAAACATGAGCCAGGGTACATTGACACTG  50

seq1  ATCCCTGCTGTTGGATAGCTACAGACCCAAGCATGGCCCTCAGCAGCAGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGCTGTTGGATAGCTACAGACCCAAGCATGGCCCTCAGCAGCAGC  100

seq1  TTGGGCTGGGACTTCACCATGGCCTCAGGTGGCAGGGATGGCCACTCAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTGGGACTTCACCATGGCCTCAGGTGGCAGGGATGGCCACTCAGA  150

seq1  ACAGGCTTCTCCTCTTCACTCTTGAGTCTCCGGTACCATTTCTCTTCATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTTCTCCTCTTCACTCTTGAGTCTCCGGTACCATTTCTCTTCATA  200

seq1  ACACTCATGCTGCTCCACATCTCTTTCTCTACCATCTGACCACCATATAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCATGCTGCTCCACATCTCTTTCTCTACCATCTGACCACCATATAT  250

seq1  GCATATATTGTGGTGGCTCTACTGTGGACTGGACATGTAGCCAGAAGGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATATTGTGGTGGCTCTACTGTGGACTGGACATGTAGCCAGAAGGGC  300

seq1  CCTGCGTGACACCCTCTTTCTGTGCTTTGTGACATGGTAGGAAGAAAATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGTGACACCCTCTTTCTGTGCTTTGTGACATGGTAGGAAGAAAATA  350

seq1  TTGATGGCCTACCTGTGCTGTGTGCTGGAAGGCAGGTTTGTGGGTGGTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGCCTACCTGTGCTGTGTGCTGGAAGGCAGGTTTGTGGGTGGTAT  400

seq1  GGTCATTGGAAGGCTCTGTCTGTTTTCCTTCTCCCAAGAAAATTAAATAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTGGAAGGCTCTGTCTGTTTTCCTTCTCCCAAGAAAATTAAATAA  450

seq1  AATCTGTCTTCTCTGTTGGTGCTGCCTGAACTTGACTTGATTTTTCTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTCTTCTCTGTTGGTGCTGCCTGAACTTGACTTGATTTTTCTTTT  500

seq1  ATGAGTCCTATGCAAAAGACAGTTTTGGTCACCAAGTCAGGCATCAGGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCCTATGCAAAAGACAGTTTTGGTCACCAAGTCAGGCATCAGGCT  550

seq1  ACAATGAACAAAGGACTACCATCTGCTCTGCCTTTGACTGATGAAAGAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAACAAAGGACTACCATCTGCTCTGCCTTTGACTGATGAAAGAAC  600

seq1  ACCACCACCAACAAGGTGTCTCTTTGCTTATTTCAAGGGATTATGAACAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCACCAACAAGGTGTCTCTTTGCTTATTTCAAGGGATTATGAACAT  650

seq1  ACATTATTATAAACAGGATTTCCTTTTAGGATGAGAACTGGCCCAAGTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTATAAACAGGATTTCCTTTTAGGATGAGAACTGGCCCAAGTTG  700

seq1  GAAGGTAATAACTTCTACAACATGAATGCAAAAATCTTCAGGGGAGGACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTAATAACTTCTACAACATGAATGCAAAAATCTTCAGGGGAGGACT  750

seq1  GATTTTGGCATAGACATACACTTGGGTTTAAGTGCATATACTTAGCTTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGGCATAGACATACACTTGGGTTTAAGTGCATATACTTAGCTTAA  800

seq1  AAGGCTGGCATATTAGAAAAGCAAATATTATTTAAAAACAGTGAAACAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGGCATATTAGAAAAGCAAATATTATTTAAAAACAGTGAAACAGC  850

seq1  ACATCTGGTGCCACAGCCTGAACAATCTGAGCATTAGAAATTAATAGTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGGTGCCACAGCCTGAACAATCTGAGCATTAGAAATTAATAGTGT  900

seq1  GTTTCCTTTGTAGAAAAGACATGTGATAAATTGAGTTGCTGTTCAATTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTTGTAGAAAAGACATGTGATAAATTGAGTTGCTGTTCAATTCC  950

seq1  CCTTCTCCATCTTAGGTAGCCAGCATCTGCCCAGGGAACTGTCTGTCCAC  999
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTTCTCCATCTTAGGTAGCCAGCATCTGCCCAGGGAACTGTCTGT-CAC  999

seq1  AATTTAAATGGGTTAACATCAGTTAAAGTCATCAAGATAAACCCTCACAG  1049
       ||||||||||||| |||||||||||||||||| |||| |||||||||||
seq2  -ATTTAAATGGGTT-ACATCAGTTAAAGTCATC-AGAT-AACCCTCACAG  1045

seq1  AGTCTCAGTGGCTAACCTCAGTCCAAGTGAAATCCCTCAAAGGTGT-GTC  1098
      ||||||||| ||||| |||||| | |||| |||||||| ||||||| |||
seq2  AGTCTCAGT-GCTAA-CTCAGTTCCAGTG-AATCCCTCGAAGGTGTGGTC  1092

seq1  TAAAGCCTAACTCCTAGGTGATTTGACA-GTCTGTCAAGAGACAAC  1143
      |  ||| || |||||||||||||||||| ||||||| |||||||||
seq2  T--AGCTTACCTCCTAGGTGATTTGACAGGTCTGTC-AGAGACAAC  1135