MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-284N18
Chromosome	1 (Build37)
Map Location	54,007,357 - 54,172,326
singlet/doublet	doublet
Overlap gene	Hecw2
Upstream gene	1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b
Downstream gene	4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44, Sf3b1, Coq10b, Hspd1, Hspe1
Link	Open Mouse BAC browser

Click to get alignment info.

name	1700019D03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67080 MGI:1914330
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gdf8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17700 MGI:95691
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700019A02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69397 MGI:1916647
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 1 Protein

name	Pms1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227099 MGI:1202302
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC671024 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:671024
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs

name	Ormdl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227102 MGI:2181669
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Osgepl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72085 MGI:1919335
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Asnsd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70396 MGI:1917646
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG627858 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:627858 MGI:3646265
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	EG627866 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:627866 MGI:3643101
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 2 Proteins

name	LOC100042162 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042162
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 72 ESTs, 14 Proteins

name	Dnahc7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:627872 MGI:2685838
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Stk17b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:98267 MGI:2138162
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hecw2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329152 MGI:2685817
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	4930511H11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78016 MGI:1925266
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gtf3c3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:98488 MGI:2138383
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG627915 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:627915 MGI:3645540
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	D230012E17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:241062 MGI:2443342
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs, 3 Proteins

name	Ankrd44 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329154 MGI:3045243
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sf3b1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:81898 MGI:1932339
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Coq10b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67876 MGI:1915126
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Hspd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15510 MGI:96242
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hspe1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15528 MGI:104680
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700019D03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367422 GeneID:67080 MGI:1914330
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700019D03 gene transcript_id : NM_144953.2

name	Gdf8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130172 GeneID:17700 MGI:95691
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : growth differentiation factor 8 transcript_id : NM_010834.2

name	1700019A02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363375 GeneID:69397 MGI:1916647
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 1 Protein product : RIKEN cDNA 1700019A02 gene transcript_id : XM_892538.2

name	Pms1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956335 GeneID:227099 MGI:1202302
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : postmeiotic segregation increased 1 (S. cerevisiae) transcript_id : NM_153556.1

name	LOC671024 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149233834 GeneID:671024
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs product : hypothetical LOC671024 transcript_id : XM_001477620.1

name	Ormdl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803365 GeneID:227102 MGI:2181669
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ORM1-like 1 (S. cerevisiae) transcript_id : NM_145517.3

name	Osgepl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803430 GeneID:72085 MGI:1919335
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : O-sialoglycoprotein endopeptidase-like 1 transcript_id : NM_028091.3

name	Asnsd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981566 GeneID:70396 MGI:1917646
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : asparagine synthetase domain containing 1 transcript_id : NM_133728.2

name	EG627866 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149233836 GeneID:627866 MGI:3643101
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 2 Proteins product : predicted gene, EG627866 transcript_id : XM_892576.3

name	LOC100042162 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149233838 GeneID:100042162
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 72 ESTs, 14 Proteins product : similar to KIAA0944 protein transcript_id : XM_001477662.1

name	Dnahc7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363388 GeneID:627872 MGI:2685838
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : dynein, axonemal, heavy chain 7 transcript_id : XM_355197.5

name	Stk17b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31559987 GeneID:98267 MGI:2138162
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : serine/threonine kinase 17b (apoptosis-inducing) transcript_id : NM_133810.2

name	Hecw2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131081 GeneID:329152 MGI:2685817
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 transcript_id : NM_001001883.2

name	Hecw2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27369943 GeneID:329152 MGI:2685817
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 transcript_id : NM_172655.1

name	4930511H11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037516 GeneID:78016 MGI:1925266
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930511H11 gene transcript_id : NM_030025.1

name	Gtf3c3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802741 GeneID:98488 MGI:2138383
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : general transcription factor IIIC, polypeptide 3 transcript_id : NM_001033194.2

name	EG627915 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149233841 GeneID:627915 MGI:3645540
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : predicted gene, EG627915 transcript_id : XM_892615.3

name	D230012E17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149233879 GeneID:241062 MGI:2443342
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs, 3 Proteins product : RIKEN cDNA D230012E17 gene transcript_id : XM_892623.2

name	Ankrd44 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487460 GeneID:329154 MGI:3045243
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat domain 44 transcript_id : NM_001081433.1

name	Sf3b1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:14042920 GeneID:81898 MGI:1932339
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : splicing factor 3b, subunit 1 transcript_id : NM_031179.1

name	Coq10b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89337273 GeneID:67876 MGI:1915126
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coenzyme Q10 homolog B (S. cerevisiae) transcript_id : NM_001039710.1

name	Coq10b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89337265 GeneID:67876 MGI:1915126
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coenzyme Q10 homolog B (S. cerevisiae) transcript_id : NM_026424.3

name	Hspd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366334 GeneID:15510 MGI:96242
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heat shock protein 1 (chaperonin) transcript_id : NM_010477.3

name	Hspe1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892401 GeneID:15528 MGI:104680
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heat shock protein 1 (chaperonin 10) transcript_id : NM_008303.3

name	Gdf8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754752 CCDS:CCDS14950.1 GeneID:17700 MGI:95691
definition	GO_component : GO:0005615 - extracellular space [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IEA]; GO:0008083 - growth factor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0005102 - receptor binding [Evidence IPI] GO_process : GO:0040007 - growth [Evidence IEA]; GO:0007179 - transforming growth factor beta receptor signaling pathway [Evidence IDA] codon_start : 1 note : myostatin product : growth differentiation factor 8 protein_id : NP_034964.1

name	1700019A02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82879250 GeneID:69397 MGI:1916647
definition	codon_start : 1 product : hypothetical protein LOC69397 protein_id : XP_897631.1

name	Pms1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956336 CCDS:CCDS14951.1 GeneID:227099 MGI:1202302
definition	GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 product : postmeiotic segregation increased 1 protein_id : NP_705784.1

name	LOC671024 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149233835 GeneID:671024
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477670.1

name	Ormdl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981801 CCDS:CCDS14952.1 GeneID:227102 MGI:2181669
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 exception : mismatches in translation product : ORM1-like 1 protein_id : NP_663492.2

name	Osgepl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560081 CCDS:CCDS14953.1 GeneID:72085 MGI:1919335
definition	GO_function : GO:0008233 - peptidase activity [Evidence IEA] codon_start : 1 product : O-sialoglycoprotein endopeptidase-like 1 protein_id : NP_082367.2

name	Asnsd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981567 CCDS:CCDS14954.1 GeneID:70396 MGI:1917646
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : asparagine synthetase domain containing 1 protein_id : NP_598489.2

name	EG627866 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149233837 GeneID:627866 MGI:3643101
definition	codon_start : 1 product : hypothetical protein protein_id : XP_897669.3

name	LOC100042162 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149233839 GeneID:100042162
definition	codon_start : 1 product : similar to KIAA0944 protein protein_id : XP_001477712.1

name	Dnahc7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82879258 GeneID:627872 MGI:2685838
definition	codon_start : 1 product : similar to dynein, axonemal, heavy polypeptide 7 protein_id : XP_355197.4

name	Stk17b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31559988 CCDS:CCDS14955.1 GeneID:98267 MGI:2138162
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0005524 - ATP binding [Evidence ISS] [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006917 - induction of apoptosis [Evidence ISS]; GO:0006468 - protein amino acid phosphorylation [Evidence ISS]; GO:0007243 - protein kinase cascade [Evidence ISS] codon_start : 1 product : serine/threonine kinase 17b (apoptosis-inducing) protein_id : NP_598571.2

name	Hecw2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:49457861 CCDS:CCDS14956.1 GeneID:329152 MGI:2685817
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; NEDD4-related E3 ubiquitin ligase NEDL2; HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2, isoform 2 product : HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 isoform 1 protein_id : NP_001001883.1

name	Hecw2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369944 CCDS:CCDS14957.1 GeneID:329152 MGI:2685817
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 2 is encoded by transcript variant 2; NEDD4-related E3 ubiquitin ligase NEDL2; HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2, isoform 2 product : HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 isoform 2 protein_id : NP_766243.1

name	4930511H11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037517 GeneID:78016 MGI:1925266
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC78016 protein_id : NP_084301.1

name	Gtf3c3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677510 CCDS:CCDS14958.1 GeneID:98488 MGI:2138383
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 note : transcription factor IIIC-gamma subunit; TFIIIC 102 kDa subunit product : general transcription factor 3C polypeptide 3 protein_id : NP_001028366.1

name	EG627915 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149233842 GeneID:627915 MGI:3645540
definition	codon_start : 1 product : similar to IIDS6411 protein_id : XP_897708.3

name	D230012E17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149233880 GeneID:241062 MGI:2443342
definition	codon_start : 1 product : GPI deacylase protein_id : XP_897716.2

name	Ankrd44 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487461 GeneID:329154 MGI:3045243
definition	GO_function : GO:0003677 - DNA binding [Evidence IEA] codon_start : 1 product : ankyrin repeat domain 44 protein_id : NP_001074902.1

name	Sf3b1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:14042921 GeneID:81898 MGI:1932339
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005681 - spliceosome complex [Evidence ISS] [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0003682 - chromatin binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0031202 - RNA splicing factor activity, transesterification mechanism [Evidence ISS] GO_process : GO:0009952 - anterior/posterior pattern formation [Evidence IGI]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA] [Evidence ISS] codon_start : 1 exception : mismatches in translation note : transforming growth factor alpha regulated gene 4; splicing factor 3b, subunit 1, 155 kDa product : splicing factor 3b, subunit 1 protein_id : NP_112456.1

name	Coq10b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:89337274 GeneID:67876 MGI:1915126
definition	GO_component : GO:0005739 - mitochondrion [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : coenzyme Q10 homolog B isoform 1 protein_id : NP_001034799.1

name	Coq10b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:89337266 CCDS:CCDS14959.1 GeneID:67876 MGI:1915126
definition	GO_component : GO:0005739 - mitochondrion [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : coenzyme Q10 homolog B isoform 2 protein_id : NP_080700.3

name	Hspd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981679 GeneID:15510 MGI:96242
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA] GO_process : GO:0044267 - cellular protein metabolism [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]; GO:0006986 - response to unfolded protein [Evidence IEA] codon_start : 1 exception : mismatches in translation note : heat shock protein, 60 kDa; heat shock 60kDa protein 1 (chaperonin) product : heat shock protein 1 (chaperonin) protein_id : NP_034607.2

name	Hspe1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680309 GeneID:15528 MGI:104680
definition	GO_component : GO:0005739 - mitochondrion [Evidence ISS] [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0051087 - chaperone binding [Evidence ISS]; GO:0051082 - unfolded protein binding [Evidence ISS] GO_process : GO:0006919 - caspase activation [Evidence ISS]; GO:0006457 - protein folding [Evidence IEA]; GO:0006986 - response to unfolded protein [Evidence IEA] codon_start : 1 note : heat shock 10 kDa protein 1 (chaperonin 10); mitochondrial chaperonin 10 product : heat shock protein 1 (chaperonin 10) protein_id : NP_032329.1

name	EG627858 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:627858
definition	number : 1 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:142259
definition	standard_name : D1Mit545

name	(CDS detail)
type	STS
link
xref	UniSTS:496661
definition	standard_name : Mstn

name	(CDS detail)
type	STS
link
xref	UniSTS:161204
definition	standard_name : RH124382

name	(CDS detail)
type	STS
link
xref	UniSTS:216850
definition	standard_name : RH133567

name	(CDS detail)
type	STS
link
xref	UniSTS:124038
definition	standard_name : 33.MMHAP34FRC12.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:128913
definition	standard_name : D1Mit544

name	(CDS detail)
type	STS
link
xref	UniSTS:165730
definition	standard_name : AW046457

name	(CDS detail)
type	STS
link
xref	UniSTS:498358
definition	standard_name : Stk17b

name	(CDS detail)
type	STS
link
xref	UniSTS:209899
definition	standard_name : RH135901

name	(CDS detail)
type	STS
link
xref	UniSTS:224479
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:162180
definition	standard_name : RH125358

name	(CDS detail)
type	STS
link
xref	UniSTS:224299
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:160910
definition	standard_name : RH114823

name	(CDS detail)
type	STS
link
xref	UniSTS:234126
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:234128
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:209419
definition	standard_name : BB257479

name	(CDS detail)
type	STS
link
xref	UniSTS:161646
definition	standard_name : RH124824

name	(CDS detail)
type	STS
link
xref	UniSTS:207157
definition	standard_name : AW990637

name	(CDS detail)
type	STS
link
xref	UniSTS:226068
definition	standard_name : Sf3b1

name	(CDS detail)
type	STS
link
xref	UniSTS:167578
definition	standard_name : D8Ertd563e

name	(CDS detail)
type	STS
link
xref	UniSTS:178391
definition	standard_name : AV002237

name	(CDS detail)
type	STS
link
xref	UniSTS:217066
definition	standard_name : RH133783

name	(CDS detail)
type	STS
link
xref	UniSTS:210798
definition	standard_name : RH127488

name	(CDS detail)
type	STS
link
xref	UniSTS:181116
definition	standard_name : AW108200

clone name	MSMg01-140M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-113C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-099I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292C15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-154G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436G13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-202J15
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-407J13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-263L04
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-341P09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-316E18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-422J07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-291O05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-452O14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-354F06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-370I03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-479H09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-513L13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-493C10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-161P18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-160O23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-479E01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-232O15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-343L07
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-500O12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-095N21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-140D02
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-452L01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-474I18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-054B10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-483E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-190H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-309F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-305N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-097C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058I18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-215P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-214H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408O12
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-097N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379J03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-265P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007G20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099C03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326C06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274K15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309G24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021C21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259M19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012B09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178M24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182C12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-088F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-280B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149A20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237C21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-014D12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211P11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-350P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-311O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120J01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-298A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198C12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340A12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159C11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226K16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-291E19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210L14
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-284N18.b	B6Ng01-284N18.g
ACC	GA083457	GA083458
length	1,183	749
definition	B6Ng01-284N18.b	B6Ng01-284N18.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(54,007,357 - 54,008,547)	(54,171,585 - 54,172,326)
sequence	gaattcctaaattaatcacaacattgaactctctgattcctaaaatgaat actagttacagttgtatataatctccagtgaacattttctaaacaacata tcttctatatgggacttcttgacataaatatataaatatataaataagag cctagaacttcaataatgttcaaatatgattccataggttcaacacacgt acactacttagtctcatactgtgtcacattcatgattctacagattcact catatgcacactactcagtctcatactgtatcatgttcatcgattactta cgttccatgaagtagggcccaggctcaattcgccatacaatttgtccttt ttgggttccagtcacacccctgtttttagagtcccagaagttggctggag aattctcatctggtaaaaaccaaagagacagttttagcttaattatcacc tgccatcccttagctcaaagatcaacataagttctaaaataagcagaaaa aaagataaagaaggcagaccatcagtgaacactgtttctaatgactacct cctagcatatcatcctaaaactctgtgtttctacatttgcatctatttgg aaaaaatggaggtctaatagggaagatggtggcacctttaggtgtggcca ggatgttgccaaaatataatattgcaatgaaccaagggttgatttactac agcttcagtgatgggctgatttgtaagaaagaagctgaggtaaacttgca tctatgaaatctttatcaaaagttgaagagttaagctgagagaattcaac aaaacccatggtgggtgaacaaaagactcaagctcaggaagctgatccag gcaacagcgtggccttgtgggaacagtgctaagcagcactggccaatgcc tcatgtcttccaggtcacccgcttgcaaagtcaaaggcaacagagctaga gctaacataagaacagttaaaggacagtgattcactttgggtacaggagg aaagatagaagtgaaagtggcccagagaacaggcagtggacacacttctc agatttcacatggaactgcaatattccctcatgcttatgatgcaggatgc tctgctgcatctgtctgactgcaatgcctgaagactaagggagtccatag actagaactgttccattatacggaccttaaaac	gaattcatctgtaaaactatttaaaatttttggagaatttctggttttta aagatgcttttctaaattctttcaaatgtattggtctatgcaatattttt aactttgaggttctttttttattaaaaaattaagttgtaatggcatatac acacaaataatgactttaaagttattttaagtttgtttgttattgttgtt gttagtgagtgtgtgtgtgtctattgggtgacacagtgcatgtggaggtc agaagataacttcagaagtttttttttttctctttctagggtgacatcta aactcagatgtgtatggcaagtgtagtcacttgctgcaccatctagttga ccctgaaagttcatttttaaactataaagtgtggttattgttatgctatt actgttattttgagttagtcattaaaagcctgtttaaaacactatggagt catggctgaccattctttctgtagattcctatgaccatctggaggcgcag cccaccagcaggaaactcaggagtggggctaccgtaactatagttttcca gactcatgtagaactgtggtgtgttctgggctttctggctttatgcttct caggaacttgcataccctttgtgagttcagggtttaatttttgtattttt ttttttttgaataaaaaattgtagatagtgggggctggtgagatggctca gtggtttggggtgattattctttatgcaaaagaccccaaattttggttt
quality values	Open. Hide. 58 33 33 37 58 58 46 46 52 62 62 62 54 62 62 49 38 39 47 47 62 41 42 62 62 62 35 62 62 62 62 38 38 21 27 24 35 56 38 38 56 56 62 59 62 62 62 62 62 62 62 59 59 59 62 54 54 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 54 42 42 54 62 59 62 54 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 49 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 47 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 53 62 62 58 58 58 58 58 58 58 58 52 58 43 40 54 58 58 58 58 54 58 58 58 58 52 58 58 58 58 58 58 58 54 58 58 58 58 58 58 58 58 58 52 54 52 47 54 54 54 58 54 58 58 58 58 54 58 58 58 58 54 58 58 54 58 58 58 58 58 53 58 53 58 58 58 58 49 51 46 58 58 58 58 58 52 58 58 51 51 58 58 58 58 51 51 58 58 58 58 50 48 58 58 46 35 41 48 51 53 58 58 51 54 46 58 49 58 54 50 51 34 58 46 49 58 54 50 33 28 41 49 50 50 43 29 49 51 58 52 58 33 31 51 50 58 58 39 29 51 41 58 46 43 35 27 58 58 37 53 53 53 53 54 52 42 37 58 58 42 32 49 49 54 49 49 50 39 22 37 50 54 54 45 54 54 50 29 49 50 40 49 49 39 51 34 52 51 54 50 39 34 42 39 50 39 25 49 54 54 45 45 37 33 30 54 47 52 39 37 51 33 49 54 51 40 46 46 37 52 53 45 46 7 49 37 40 49 32 39 41 54 47 32 21 52 41 40 32 42 32 47 49 45 32 32 32 53 42 34 45 35 31 51 53 40 40 53 39 32 33 35 37 46 20 26 41 33 51 31 42 31 31 34 10 33 30 37 36 31 31 31 30 31 33 31 51 45 32 31 40 32 32 25 46 36 22 51 47 46 32 45 41 32 22 19 46 46 46 31 42 30 36 32 32 31 31 31 42 31 19 6 32 34 41 27 25 41 27 25 25 33 42 23 31 33 32 24 37 41 31 22 26 25 18 28 41 32 29 20 24 30 27 31 48 46 22 33 27 26 27 27 36 32 31 13 31 21 31 26 17 31 31 29 31 20 30 15 31 20 19 19 32 20 17 17 20 22 31 42 32 34 31 25 21 24 22 24 18 30 24 35 6 28 14 17 27 22 25 33 17 9 41 34 33 31 27 25 48 25 24 23 16 13 14 24 21 9 26 8 26 31 22 22 21 13 32 25 34 16 23 19 33 26 17 32 30 17 29 31 31 11 10 33 47 43 11 10 32 13 11 16 18 28 21 10 31 11 16 6 15 40 15 14 40 13 28 18 8 3 6 7 38 7 8 30 40 17 16 17 10 10 19 21 20 7 11 9 15 30 17 14 6 5 19 3 16 13 6 5 18 4 13 9 8 20 5 6 28 6 5 6 8 24 12 7 3 9 8 7 21 18 16 17 12 8 11 5 5 17 10 5 5 6 8 20 13 17 12 13 6 10 15 17 16 13 11 15 11 13 18 14 6 7 10 18 16 21 21 14 7 14 16 16 26 9 13 18 18 17 17 4 10 15 14 6 5 3 6 15 13 13 16 8 7 9 4 3 2 3 6 5 1 3 2 2 2 4 5 17 5 5 5 11 4 4 15 17 3 3 2 7 14 9 16 4 6 3 3 8 5 6 4 7 5 12 15 13 21 8 14 11 9 16 5 5 8 11 7 1 3 2 7 7 6 8 4 5 10 7 12 2 3 6 17 9 8 7	Open. Hide. 62 47 39 47 62 59 44 59 62 62 29 18 19 18 18 23 23 28 34 34 43 33 56 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 59 59 59 43 43 43 38 59 59 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 54 62 62 59 62 62 62 62 62 62 62 59 59 62 62 62 62 54 54 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 51 56 59 56 59 51 62 62 62 59 62 62 62 62 49 59 62 59 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 54 59 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 56 59 50 56 48 54 56 59 62 62 62 51 62 54 56 62 54 62 56 59 56 54 50 56 62 62 62 51 43 27 54 59 56 54 56 51 51 49 62 62 62 62 62 62 62 62 62 62 59 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 43 51 56 50 54 48 48 34 48 59 51 59 59 59 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 59 62 62 59 49 62 62 62 62 62 62 54 62 62 62 62 62 62 59 62 62 62 62 62 56 59 59 46 46 59 59 56 62 59 62 62 62 62 59 62 59 50 59 56 39 59 59 59 56 59 59 59 43 59 59 56 62 62 62 62 62 62 62 56 26 62 54 47 62 62 49 49 62 56 62 44 62 62 56 56 62 44 47 62 51 62 51 62 62 62 62 62 62 42 47 42 62 51 62 42 34 37 50 42 42 31 47 62 56 62 62 62 49 38 62 62 56 62 62 56 56 56 62 62 41 56 62 62 62 62 56 62 62 47 56 56 47 50 62 56 42 56 56 48 52 42 34 18 48 41 43 34 47 62 62 48 31 42 43 46 52 62 52 52 54 52 35 52 48 28 52 39 54 30 47 39 22 43 52 34 37 47 15 54 52 54 47 52 35 41 45 46 54 47 42 52 34 52 32 52 52 47 28 18 54 54 18 14 54 58 54 52 52 35 38 52 46 52 32 54 39 47 39 32 46 37 27 42 27 28 39 41 41 24 30 26 20 45 17 22 12 16 21 30 40 7 12 20 21 16 18 22 32 34 29 32 18 26 30 19 49 40 39 46 22 8 7 7 6 6 10 16 30 9 31 12 7 19 10 8 13 7 15 13 31 29 16 19 18 26 17 32 10 19

Alignment Information

BAC End 1

BAC End 2

seq1: chr1_54007357_54008547
seq2: B6Ng01-284N18.b_48_1230

seq1  GAATTCCTAAATTAATCACAACATTGAACTCTCTGATTCCTAAAATGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAATTAATCACAACATTGAACTCTCTGATTCCTAAAATGAAT  50

seq1  ACTAGTTACAGTTGTATATAATCTCCAGTGAACATTTTCTAAACAACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTACAGTTGTATATAATCTCCAGTGAACATTTTCTAAACAACATA  100

seq1  TCTTCTATATGGGACTTCTTGACATAAATATATAAATATATAAATAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTATATGGGACTTCTTGACATAAATATATAAATATATAAATAAGAG  150

seq1  CCTAGAACTTCAATAATGTTCAAATATGATTCCATAGGTTCAACACACGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAACTTCAATAATGTTCAAATATGATTCCATAGGTTCAACACACGT  200

seq1  ACACTACTTAGTCTCATACTGTGTCACATTCATGATTCTACAGATTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACTTAGTCTCATACTGTGTCACATTCATGATTCTACAGATTCACT  250

seq1  CATATGCACACTACTCAGTCTCATACTGTATCATGTTCATCGATTACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCACACTACTCAGTCTCATACTGTATCATGTTCATCGATTACTTA  300

seq1  CGTTCCATGAAGTAGGGCCCAGGCTCAATTCGCCATACAATTTGTCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCATGAAGTAGGGCCCAGGCTCAATTCGCCATACAATTTGTCCTTT  350

seq1  TTGGGTTCCAGTCACACCCCTGTTTTTAGAGTCCCAGAAGTTGGCTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTCCAGTCACACCCCTGTTTTTAGAGTCCCAGAAGTTGGCTGGAG  400

seq1  AATTCTCATCTGGTAAAAACCAAAGAGACAGTTTTAGCTTAATTATCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCATCTGGTAAAAACCAAAGAGACAGTTTTAGCTTAATTATCACC  450

seq1  TGCCATCCCTTAGCTCAAAGATCAACATAAGTTCTAAAATAAGCAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCCCTTAGCTCAAAGATCAACATAAGTTCTAAAATAAGCAGAAAA  500

seq1  AAAGATAAAGAAGGCAGACCATCAGTGAACACTGTTTCTAATGACTACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAAAGAAGGCAGACCATCAGTGAACACTGTTTCTAATGACTACCT  550

seq1  CCTAGCATATCATCCTAAAACTCTGTGTTTCTACATTTGCATCTATTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCATATCATCCTAAAACTCTGTGTTTCTACATTTGCATCTATTTGG  600

seq1  AAAAAATGGAGGTCTAATAGGGAAGATGGTGGCACCTTTAGGTGTGGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGGAGGTCTAATAGGGAAGATGGTGGCACCTTTAGGTGTGGCCA  650

seq1  GGATGTTGCCAAAATATAATATTGCAATGAACCAAGGGTTGATTTACTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTGCCAAAATATAATATTGCAATGAACCAAGGGTTGATTTACTAC  700

seq1  AGCTTCAGTGATGGGCTGATTTGTAAGAAAGAAGCTGAGGTAAACTTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAGTGATGGGCTGATTTGTAAGAAAGAAGCTGAGGTAAACTTGCA  750

seq1  TCTATGAAATCTTTATCAAAAGTTGAAGAGTTAAGCTGAGAGAATTCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAAATCTTTATCAAAAGTTGAAGAGTTAAGCTGAGAGAATTCAAC  800

seq1  AAAACCCATGGTGGGTGAACAAAAGACTCAAGCTCAGGAAGCTGATCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCATGGTGGGTGAACAAAAGACTCAAGCTCAGGAAGCTGATCCAG  850

seq1  GCAACAGCGTGGCCTTGTGGGAACAGTGCTAAGCAGCACTGGCCAATGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGCGTGGCCTTGTGGGAACAGTGCTAAGCAGCACTGGCCAATGCC  900

seq1  TCATGTCTTCCAGGTCAACCGCTTGCAAAGTCAAAGGCAACAGAGCTAGA  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCATGTCTTCCAGGTCACCCGCTTGCAAAGTCAAAGGCAACAGAGCTAGA  950

seq1  GCTAACATAAGAACAG-TAAAAGACAGTGATTCAACTTTGGTACA-GAAG  998
      |||||||||||||||| |||| ||||||||||||  || |||||| || |
seq2  GCTAACATAAGAACAGTTAAAGGACAGTGATTCACTTTGGGTACAGGAGG  1000

seq1  AAAGATAGAAGTGAAAGTGGCCCAGAGAACAAGCCAGTGGACCACACTTC  1048
      |||||||||||||||||||||||||||||| || ||||||| ||||||||
seq2  AAAGATAGAAGTGAAAGTGGCCCAGAGAAC-AGGCAGTGGA-CACACTTC  1048

seq1  TCAGGATTTCCACATGGAAACTGCAATATTCCCCTCATGCTTATGATGCA  1098
      ||| ||||| ||||||| |||||||||||| |||||||||||||||||||
seq2  TCA-GATTT-CACATGG-AACTGCAATATT-CCCTCATGCTTATGATGCA  1094

seq1  GGGATGCTCTGCTGCATCTGGTTCTGCCCTGCCATG-CTGAAGGCCAAAG  1147
       |||||||||||||||||||  ||||  |||| ||| ||||| | | |||
seq2  -GGATGCTCTGCTGCATCTG--TCTG-ACTGCAATGCCTGAA-GACTAAG  1139

seq1  GGAGT-CATAGACTAGAACTTGTTCACATTATAC-GACCTTAAAAC  1191
      ||||| ||||||||||||| ||||| |||||||| |||||||||||
seq2  GGAGTCCATAGACTAGAAC-TGTTC-CATTATACGGACCTTAAAAC  1183

seq1: chr1_54171585_54172326
seq2: B6Ng01-284N18.g_71_819 (reverse)

seq1  AAACCAAA--TTTGGGTCTTCTGCATGAAGAATAATCACCCCAAACCACT  48
      ||||||||  || ||||||| ||||| |||||||||||||||||||||||
seq2  AAACCAAAATTTGGGGTCTTTTGCATAAAGAATAATCACCCCAAACCACT  50

seq1  GAGCCATCTCACCAG-CCCCACTATCTACAA-TTTTTATTC--AAAAAAA  94
      ||||||||||||||| ||||||||||||||| |||||||||  |||||||
seq2  GAGCCATCTCACCAGCCCCCACTATCTACAATTTTTTATTCAAAAAAAAA  100

seq1  AAAATAC-AAAATTAAACCCTGAACTCACAAAGGGTATGCAAGTTCCTGA  143
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAAAAATTAAACCCTGAACTCACAAAGGGTATGCAAGTTCCTGA  150

seq1  GAAGCATAAAGCCAGAAAGCCCAGAACACACCACAGTTCTACATGAGTCT  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATAAAGCCAGAAAGCCCAGAACACACCACAGTTCTACATGAGTCT  200

seq1  GGAAAACTATAGTTACGGTAGCCCCACTCCTGAGTTTCCTGCTGGTGGGC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACTATAGTTACGGTAGCCCCACTCCTGAGTTTCCTGCTGGTGGGC  250

seq1  TGCGCCTCCAGATGGTCATAGGAATCTACAGAAAGAATGGTCAGCCATGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCCTCCAGATGGTCATAGGAATCTACAGAAAGAATGGTCAGCCATGA  300

seq1  CTCCATAGTGTTTTAAACAGGCTTTTAATGACTAACTCAAAATAACAGTA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAGTGTTTTAAACAGGCTTTTAATGACTAACTCAAAATAACAGTA  350

seq1  ATAGCATAACAATAACCACACTTTATAGTTTAAAAATGAACTTTCAGGGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATAACAATAACCACACTTTATAGTTTAAAAATGAACTTTCAGGGT  400

seq1  CAACTAGATGGTGCAGCAAGTGACTACACTTGCCATACACATCTGAGTTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAGATGGTGCAGCAAGTGACTACACTTGCCATACACATCTGAGTTT  450

seq1  AGATGTCACCCTAGAAAGAGAAAAAAAAAAACTTCTGAAGTTATCTTCTG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCACCCTAGAAAGAGAAAAAAAAAAACTTCTGAAGTTATCTTCTG  500

seq1  ACCTCCACATGCACTGTGTCACCCAATAGACACACACACACTCACTAACA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCACATGCACTGTGTCACCCAATAGACACACACACACTCACTAACA  550

seq1  ACAACAATAACAAACAAACTTAAAATAACTTTAAAGTCATTATTTGTGTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAATAACAAACAAACTTAAAATAACTTTAAAGTCATTATTTGTGTG  600

seq1  TATATGCCATTACAACTTAATTTTTTAATAAAAAAAGAACCTCAAAGTTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCCATTACAACTTAATTTTTTAATAAAAAAAGAACCTCAAAGTTA  650

seq1  AAAATATTGCATAGACCAATACATTTGAAAGAATTTAGAAAAGCATCTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTGCATAGACCAATACATTTGAAAGAATTTAGAAAAGCATCTTT  700

seq1  AAAAACCAGAAATTCTCCAAAAATTTTAAATAGTTTTACAGATGAATTC  742
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAGAAATTCTCCAAAAATTTTAAATAGTTTTACAGATGAATTC  749

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information